Wall clock time and date at job start Mon Mar 30 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47120 * 2 1 4 4 C 1.52997 * 109.46599 * 119.99881 * 2 1 3 5 5 H 1.08994 * 109.68761 * 59.99837 * 4 2 1 6 6 C 1.53406 * 109.71306 * 180.54228 * 4 2 1 7 7 C 1.53073 * 108.29967 * 184.44695 * 6 4 2 8 8 H 1.08995 * 109.43879 * 71.84460 * 7 6 4 9 9 C 1.50702 * 109.40101 * 191.74076 * 7 6 4 10 10 H 1.07998 * 120.00076 * 94.33277 * 9 7 6 11 11 C 1.37877 * 120.00062 * 274.33448 * 9 7 6 12 12 N 1.31516 * 120.00157 * 186.17153 * 11 9 7 13 13 Si 1.86804 * 119.99856 * 6.17359 * 11 9 7 14 14 H 1.48506 * 109.47209 * 84.80270 * 13 11 9 15 15 H 1.48501 * 109.46874 * 204.80177 * 13 11 9 16 16 H 1.48495 * 109.47248 * 324.80104 * 13 11 9 17 17 C 1.50771 * 109.67887 * 311.77869 * 7 6 4 18 18 C 1.38504 * 118.76225 * 197.62637 * 17 7 6 19 19 C 1.38106 * 120.31268 * 180.45327 * 18 17 7 20 20 C 1.38287 * 119.98225 * 359.95932 * 19 18 17 21 21 C 1.37963 * 119.96441 * 359.91491 * 20 19 18 22 22 C 1.38376 * 121.40159 * 17.87365 * 17 7 6 23 23 O 1.35846 * 121.80431 * 359.44572 * 22 17 7 24 24 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47205 * 300.00287 * 1 2 3 26 26 H 1.09010 * 109.46778 * 60.00328 * 1 2 3 27 27 H 1.09003 * 109.46984 * 239.99303 * 2 1 3 28 28 H 1.09002 * 109.46976 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46525 * 299.99412 * 3 2 1 30 30 H 1.08999 * 109.47259 * 59.99234 * 3 2 1 31 31 H 1.09011 * 109.69418 * 304.14347 * 6 4 2 32 32 H 1.08994 * 109.70346 * 64.73903 * 6 4 2 33 33 H 0.97002 * 120.00040 * 179.97438 * 12 11 9 34 34 H 1.07993 * 119.84192 * 0.44637 * 18 17 7 35 35 H 1.08000 * 120.00518 * 179.97438 * 19 18 17 36 36 H 1.08007 * 120.01741 * 179.97438 * 20 19 18 37 37 H 1.07992 * 119.89905 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6785 -1.7495 1.2528 6 6 3.5739 -0.7127 1.2618 7 6 4.0493 -1.5359 2.4617 8 1 3.8665 -2.5934 2.2713 9 6 5.5249 -1.3114 2.6696 10 1 5.8637 -0.5585 3.3658 11 6 6.4424 -2.0673 1.9711 12 7 7.7252 -1.9578 2.2395 13 14 5.8633 -3.2468 0.6434 14 1 5.7020 -2.5110 -0.6364 15 1 6.8666 -4.3278 0.4698 16 1 4.5611 -3.8394 1.0412 17 6 3.2981 -1.1116 3.6981 18 6 3.8123 -1.4494 4.9391 19 6 3.1457 -1.0852 6.0924 20 6 1.9595 -0.3790 6.0113 21 6 1.4439 -0.0374 4.7781 22 6 2.1132 -0.4019 3.6139 23 8 1.5762 -0.0444 2.4184 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5140 -0.8899 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.9513 -1.1553 0.3399 32 1 3.9349 0.3117 1.3528 33 1 8.3706 -2.4898 1.7483 34 1 4.7387 -2.0004 5.0050 35 1 3.5509 -1.3516 7.0574 36 1 1.4375 -0.0941 6.9130 37 1 0.5177 0.5145 4.7160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259770734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:16 Heat of formation + Delta-G solvation = -34.293083 kcal Electronic energy + Delta-G solvation = -18378.141116 eV Core-core repulsion = 15698.681437 eV Total energy + Delta-G solvation = -2679.459679 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15766 -37.35740 -34.92629 -34.19545 -31.75656 -29.51752 -29.26229 -27.03896 -26.50666 -23.48930 -22.70385 -21.41157 -20.17849 -18.79562 -17.17546 -16.94422 -15.86216 -15.27125 -14.52755 -14.28814 -14.14250 -13.62937 -13.38489 -13.19031 -13.08557 -12.74492 -12.33636 -12.06522 -11.87011 -11.60463 -11.28372 -11.04610 -10.93130 -10.74895 -10.68803 -10.57720 -10.35105 -9.97674 -9.86465 -9.39258 -9.20029 -8.58492 -8.01138 -7.43076 -6.16463 -4.15815 2.05987 2.10372 3.19846 3.27854 3.29580 3.80855 4.31946 4.46565 4.94603 5.08413 5.18765 5.21849 5.51335 5.54958 5.62937 5.75962 5.77780 5.83165 5.85118 5.94864 6.05088 6.09179 6.14599 6.19158 6.28303 6.42250 6.47516 6.56311 6.65765 6.75761 6.80724 6.98785 7.15109 7.21219 7.44866 7.51017 7.66703 8.13256 8.44185 8.89614 9.44502 10.96066 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.011475 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.767434 B = 2439.434582 C = 3826.044187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.090 3.910 5 H 0.061 0.939 6 C -0.147 4.147 7 C 0.041 3.959 8 H 0.050 0.950 9 C -0.503 4.503 10 H 0.078 0.922 11 C 0.075 3.925 12 N -0.895 5.895 13 Si 0.869 3.131 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.263 1.263 17 C -0.114 4.114 18 C -0.066 4.066 19 C -0.165 4.165 20 C -0.108 4.108 21 C -0.163 4.163 22 C 0.118 3.882 23 O -0.315 6.315 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.265 0.735 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 2.216 -0.875 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.034 3.966 5 H 0.078 0.922 6 C -0.185 4.185 7 C 0.023 3.977 8 H 0.068 0.932 9 C -0.541 4.541 10 H 0.096 0.904 11 C -0.128 4.128 12 N -0.532 5.532 13 Si 0.697 3.303 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.188 1.188 17 C -0.115 4.115 18 C -0.084 4.084 19 C -0.184 4.184 20 C -0.127 4.127 21 C -0.181 4.181 22 C 0.073 3.927 23 O -0.230 6.230 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.408 2.290 -0.974 12.655 hybrid contribution 0.101 -0.776 -0.812 1.128 sum -12.308 1.514 -1.786 12.529 Atomic orbital electron populations 1.21794 0.95049 1.01473 1.01796 1.21189 0.96062 0.97340 0.95981 1.21823 1.01731 0.95294 1.01499 1.22615 0.96036 0.94605 0.83388 0.92153 1.22676 0.91912 1.03050 1.00859 1.18340 0.95969 0.95596 0.87832 0.93225 1.20854 0.86889 1.20991 1.25370 0.90432 1.25008 0.94781 0.96377 0.96617 1.69893 1.01035 1.41300 1.41003 0.87027 0.78929 0.81363 0.83026 1.19932 1.21440 1.18793 1.20329 0.93417 1.00078 0.97665 1.21158 0.98958 0.97442 0.90796 1.21002 0.96711 1.02416 0.98243 1.20692 0.96499 0.99330 0.96137 1.20368 1.01083 1.06199 0.90499 1.18804 0.92182 0.96711 0.85026 1.85833 1.63108 1.61042 1.12979 0.93078 0.91908 0.93029 0.90008 0.91949 0.93255 0.91967 0.91817 0.90472 0.92499 0.84894 0.86865 0.86675 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.05 37.16 0.34 -1.46 16 2 C -0.09 -1.26 2.83 -90.62 -0.26 -1.52 16 3 C -0.15 -2.08 8.69 37.16 0.32 -1.75 16 4 C 0.09 1.59 2.53 -26.52 -0.07 1.52 16 5 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.15 -3.04 4.03 -26.48 -0.11 -3.15 16 7 C 0.04 0.96 1.87 -92.85 -0.17 0.78 16 8 H 0.05 1.19 5.72 -51.93 -0.30 0.89 16 9 C -0.50 -13.58 7.65 -34.44 -0.26 -13.84 16 10 H 0.08 2.31 7.91 -52.49 -0.41 1.90 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 12 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 13 Si 0.87 20.63 25.90 -169.99 -4.40 16.23 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.26 -5.98 6.13 56.52 0.35 -5.63 16 17 C -0.11 -2.47 5.42 -104.44 -0.57 -3.04 16 18 C -0.07 -1.35 9.01 -39.53 -0.36 -1.71 16 19 C -0.17 -2.90 10.04 -39.61 -0.40 -3.29 16 20 C -0.11 -1.76 10.04 -39.66 -0.40 -2.16 16 21 C -0.16 -2.84 9.94 -39.34 -0.39 -3.23 16 22 C 0.12 2.34 6.47 -39.19 -0.25 2.08 16 23 O -0.31 -5.90 8.60 -19.26 -0.17 -6.06 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 26 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.95 6.55 -51.93 -0.34 0.61 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 31 H 0.06 1.30 6.39 -51.92 -0.33 0.97 16 32 H 0.08 1.66 6.69 -51.93 -0.35 1.32 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.13 2.89 7.36 -52.49 -0.39 2.51 16 35 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 291.03 15.07 4.39 4.39 Total: -1.00 -28.72 291.03 -7.57 -36.28 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.49 Total: 3.65 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -2.67 Total: -28.80 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.77 Total: -25.68 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.17 Total: -6.06 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.40 Total: 16.23 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.72 -7.57 -36.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.991 kcal (2) G-P(sol) polarization free energy of solvation -28.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds