Wall clock time and date at job start Mon Mar 30 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47120 * 2 1 4 4 C 1.52997 * 109.46599 * 119.99881 * 2 1 3 5 5 H 1.08994 * 109.68761 * 59.99837 * 4 2 1 6 6 C 1.53406 * 109.71306 * 180.54228 * 4 2 1 7 7 C 1.53073 * 108.29967 * 184.44695 * 6 4 2 8 8 H 1.08995 * 109.43879 * 71.84460 * 7 6 4 9 9 C 1.50702 * 109.40101 * 191.74076 * 7 6 4 10 10 H 1.07998 * 120.00076 * 94.33277 * 9 7 6 11 11 C 1.37877 * 120.00062 * 274.33448 * 9 7 6 12 12 N 1.31516 * 120.00157 * 186.17153 * 11 9 7 13 13 Si 1.86804 * 119.99856 * 6.17359 * 11 9 7 14 14 H 1.48506 * 109.47209 * 84.80270 * 13 11 9 15 15 H 1.48501 * 109.46874 * 204.80177 * 13 11 9 16 16 H 1.48495 * 109.47248 * 324.80104 * 13 11 9 17 17 C 1.50771 * 109.67887 * 311.77869 * 7 6 4 18 18 C 1.38504 * 118.76225 * 197.62637 * 17 7 6 19 19 C 1.38106 * 120.31268 * 180.45327 * 18 17 7 20 20 C 1.38287 * 119.98225 * 359.95932 * 19 18 17 21 21 C 1.37963 * 119.96441 * 359.91491 * 20 19 18 22 22 C 1.38376 * 121.40159 * 17.87365 * 17 7 6 23 23 O 1.35846 * 121.80431 * 359.44572 * 22 17 7 24 24 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47205 * 300.00287 * 1 2 3 26 26 H 1.09010 * 109.46778 * 60.00328 * 1 2 3 27 27 H 1.09003 * 109.46984 * 239.99303 * 2 1 3 28 28 H 1.09002 * 109.46976 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46525 * 299.99412 * 3 2 1 30 30 H 1.08999 * 109.47259 * 59.99234 * 3 2 1 31 31 H 1.09011 * 109.69418 * 304.14347 * 6 4 2 32 32 H 1.08994 * 109.70346 * 64.73903 * 6 4 2 33 33 H 0.97002 * 120.00040 * 179.97438 * 12 11 9 34 34 H 1.07993 * 119.84192 * 0.44637 * 18 17 7 35 35 H 1.08000 * 120.00518 * 179.97438 * 19 18 17 36 36 H 1.08007 * 120.01741 * 179.97438 * 20 19 18 37 37 H 1.07992 * 119.89905 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6785 -1.7495 1.2528 6 6 3.5739 -0.7127 1.2618 7 6 4.0493 -1.5359 2.4617 8 1 3.8665 -2.5934 2.2713 9 6 5.5249 -1.3114 2.6696 10 1 5.8637 -0.5585 3.3658 11 6 6.4424 -2.0673 1.9711 12 7 7.7252 -1.9578 2.2395 13 14 5.8633 -3.2468 0.6434 14 1 5.7020 -2.5110 -0.6364 15 1 6.8666 -4.3278 0.4698 16 1 4.5611 -3.8394 1.0412 17 6 3.2981 -1.1116 3.6981 18 6 3.8123 -1.4494 4.9391 19 6 3.1457 -1.0852 6.0924 20 6 1.9595 -0.3790 6.0113 21 6 1.4439 -0.0374 4.7781 22 6 2.1132 -0.4019 3.6139 23 8 1.5762 -0.0444 2.4184 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5140 -0.8899 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.9513 -1.1553 0.3399 32 1 3.9349 0.3117 1.3528 33 1 8.3706 -2.4898 1.7483 34 1 4.7387 -2.0004 5.0050 35 1 3.5509 -1.3516 7.0574 36 1 1.4375 -0.0941 6.9130 37 1 0.5177 0.5145 4.7160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:16 Heat of formation + Delta-G solvation = -50.034541 kcal Electronic energy + Delta-G solvation = -18378.823717 eV Core-core repulsion = 15698.681437 eV Total energy + Delta-G solvation = -2680.142280 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.64832 -38.74686 -36.45423 -35.73280 -33.74827 -31.00732 -30.66851 -28.45502 -27.97175 -25.06425 -24.28735 -22.95282 -21.58778 -20.26349 -19.08017 -18.55649 -17.37691 -16.65472 -16.37602 -15.79552 -15.41254 -15.00015 -14.91768 -14.68416 -14.64549 -14.49752 -13.74594 -13.44815 -13.14985 -13.00433 -12.87436 -12.63628 -12.49246 -12.20722 -12.08537 -11.93117 -11.82565 -11.72181 -11.32088 -11.26430 -10.94268 -10.61439 -9.53779 -8.92803 -8.32616 -6.35917 0.57948 0.62765 1.29225 1.31511 1.40573 2.29583 2.40596 2.95271 3.01833 3.77929 3.83064 4.03425 4.08359 4.10705 4.23472 4.34421 4.41567 4.54764 4.61362 4.64684 4.77686 4.81412 4.88564 4.93095 5.02908 5.04853 5.16155 5.17918 5.27358 5.35395 5.45997 5.49348 5.54030 5.58346 5.71709 5.94070 6.04025 6.29780 6.61176 6.71307 7.27133 8.83773 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.011475 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.767434 B = 2439.434582 C = 3826.044187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.092 3.908 5 H 0.065 0.935 6 C -0.141 4.141 7 C 0.042 3.958 8 H 0.041 0.959 9 C -0.500 4.500 10 H 0.030 0.970 11 C 0.017 3.983 12 N -0.945 5.945 13 Si 0.931 3.069 14 H -0.257 1.257 15 H -0.288 1.288 16 H -0.246 1.246 17 C -0.149 4.149 18 C -0.091 4.091 19 C -0.163 4.163 20 C -0.093 4.093 21 C -0.160 4.160 22 C 0.104 3.896 23 O -0.312 6.312 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.267 0.733 34 H 0.104 0.896 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 2.371 -1.354 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.036 3.964 5 H 0.082 0.918 6 C -0.179 4.179 7 C 0.023 3.977 8 H 0.059 0.941 9 C -0.537 4.537 10 H 0.048 0.952 11 C -0.181 4.181 12 N -0.585 5.585 13 Si 0.756 3.244 14 H -0.182 1.182 15 H -0.214 1.214 16 H -0.170 1.170 17 C -0.150 4.150 18 C -0.110 4.110 19 C -0.181 4.181 20 C -0.110 4.110 21 C -0.178 4.178 22 C 0.059 3.941 23 O -0.227 6.227 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.750 2.457 -1.452 16.007 hybrid contribution 1.140 -0.743 -0.501 1.450 sum -14.610 1.714 -1.953 14.839 Atomic orbital electron populations 1.21744 0.93022 1.02196 1.02534 1.21261 0.97710 0.96980 0.94474 1.21801 1.00508 0.95529 1.02310 1.22707 0.93496 0.95624 0.84568 0.91754 1.22482 0.94706 1.01308 0.99387 1.18224 0.93622 0.95642 0.90184 0.94072 1.20962 0.89573 1.19394 1.23819 0.95198 1.25845 0.94650 0.98479 0.99088 1.70048 1.02510 1.43135 1.42821 0.86007 0.79014 0.79084 0.80343 1.18157 1.21394 1.17020 1.20280 0.94999 1.02556 0.97144 1.21098 0.98798 0.98813 0.92261 1.21297 0.97012 1.01733 0.98051 1.21194 0.95386 0.96988 0.97452 1.20802 1.01724 1.05397 0.89915 1.19039 0.91929 0.96723 0.86362 1.85845 1.62766 1.61156 1.12912 0.92390 0.92718 0.90748 0.88593 0.93849 0.90594 0.92989 0.91703 0.92210 0.92445 0.87798 0.84226 0.82104 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.05 71.98 0.65 -2.31 16 2 C -0.09 -2.27 2.83 -10.79 -0.03 -2.30 16 3 C -0.14 -3.83 8.69 71.98 0.63 -3.21 16 4 C 0.09 3.14 2.53 30.73 0.08 3.22 16 5 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 6 C -0.14 -5.86 4.03 30.75 0.12 -5.74 16 7 C 0.04 2.00 1.87 -12.24 -0.02 1.98 16 8 H 0.04 2.01 5.72 -2.39 -0.01 1.99 16 9 C -0.50 -28.59 7.65 25.60 0.20 -28.39 16 10 H 0.03 1.93 7.91 -2.91 -0.02 1.91 16 11 C 0.02 0.98 5.47 84.65 0.46 1.44 16 12 N -0.95 -58.71 13.96 21.45 0.30 -58.42 16 13 Si 0.93 43.27 25.90 68.60 1.78 45.05 16 14 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 16 H -0.25 -10.68 6.13 99.48 0.61 -10.07 16 17 C -0.15 -6.61 5.42 -19.75 -0.11 -6.72 16 18 C -0.09 -3.91 9.01 22.30 0.20 -3.71 16 19 C -0.16 -5.47 10.04 22.25 0.22 -5.24 16 20 C -0.09 -2.66 10.04 22.22 0.22 -2.44 16 21 C -0.16 -5.09 9.94 22.42 0.22 -4.87 16 22 C 0.10 4.04 6.47 22.52 0.15 4.19 16 23 O -0.31 -11.24 8.60 -91.82 -0.79 -12.03 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.27 7.71 -2.39 -0.02 1.25 16 26 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.04 1.30 6.55 -2.39 -0.02 1.28 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 30 H 0.05 1.47 7.68 -2.39 -0.02 1.45 16 31 H 0.06 2.62 6.39 -2.38 -0.02 2.61 16 32 H 0.06 2.66 6.69 -2.39 -0.02 2.64 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.10 4.90 7.36 -2.91 -0.02 4.88 16 35 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -65.92 291.03 5.22 -60.70 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.94 Total: 18.80 kcal Atomic # 6 Polarization: -57.09 SS G_CDS: 2.99 Total: -54.10 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.30 Total: -58.42 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.79 Total: -12.03 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.78 Total: 45.05 kcal Total: -65.92 5.22 -60.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.663 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds