Wall clock time and date at job start Mon Mar 30 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47515 * 2 1 4 4 C 1.53006 * 109.46846 * 120.00016 * 2 1 3 5 5 H 1.09003 * 109.67717 * 59.47978 * 4 2 1 6 6 C 1.53411 * 109.68134 * 179.97438 * 4 2 1 7 7 C 1.53067 * 108.29654 * 184.42789 * 6 4 2 8 8 H 1.09005 * 109.43901 * 191.72616 * 7 6 4 9 9 C 1.50708 * 109.43707 * 71.86039 * 7 6 4 10 10 H 1.07998 * 119.99583 * 275.02994 * 9 7 6 11 11 C 1.37872 * 120.00189 * 95.03112 * 9 7 6 12 12 N 1.31514 * 120.00026 * 5.19098 * 11 9 7 13 13 Si 1.86800 * 120.00043 * 185.19781 * 11 9 7 14 14 H 1.48504 * 109.47004 * 59.99466 * 13 11 9 15 15 H 1.48494 * 109.47381 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47024 * 300.00052 * 13 11 9 17 17 C 1.50762 * 109.68527 * 311.78990 * 7 6 4 18 18 C 1.38509 * 118.77102 * 197.82335 * 17 7 6 19 19 C 1.38099 * 120.31680 * 180.16209 * 18 17 7 20 20 C 1.38289 * 119.98721 * 0.02562 * 19 18 17 21 21 C 1.37972 * 119.95665 * 359.92205 * 20 19 18 22 22 C 1.38373 * 121.40140 * 17.85154 * 17 7 6 23 23 O 1.35842 * 121.80472 * 359.47328 * 22 17 7 24 24 H 1.08997 * 109.47222 * 299.99963 * 1 2 3 25 25 H 1.08999 * 109.47359 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46890 * 59.99669 * 1 2 3 27 27 H 1.09007 * 109.46981 * 239.99536 * 2 1 3 28 28 H 1.09007 * 109.47374 * 59.99777 * 3 2 1 29 29 H 1.08994 * 109.47300 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47312 * 300.00073 * 3 2 1 31 31 H 1.09005 * 109.69790 * 304.13342 * 6 4 2 32 32 H 1.09002 * 109.69543 * 64.72895 * 6 4 2 33 33 H 0.97002 * 119.99669 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.83693 * 0.14405 * 18 17 7 35 35 H 1.08004 * 120.00560 * 180.02562 * 19 18 17 36 36 H 1.08003 * 120.02132 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.88916 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6708 -1.7469 1.2574 6 6 3.5740 -0.7247 1.2539 7 6 4.0491 -1.5472 2.4542 8 1 5.1185 -1.3934 2.5990 9 6 3.7840 -3.0084 2.1974 10 1 2.8153 -3.4292 2.4230 11 6 4.7781 -3.8079 1.6745 12 7 5.9868 -3.3217 1.4952 13 14 4.4080 -5.5817 1.2205 14 1 3.3401 -5.6162 0.1892 15 1 5.6355 -6.2216 0.6829 16 1 3.9539 -6.3173 2.4280 17 6 3.3077 -1.1129 3.6930 18 6 3.8276 -1.4468 4.9326 19 6 3.1729 -1.0681 6.0881 20 6 1.9921 -0.3525 6.0106 21 6 1.4699 -0.0162 4.7786 22 6 2.1280 -0.3941 3.6123 23 8 1.5876 -0.0367 2.4183 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 3.9432 -1.1734 0.3316 32 1 3.9434 0.2972 1.3395 33 1 6.6863 -3.8844 1.1277 34 1 4.7493 -2.0062 4.9957 35 1 3.5831 -1.3308 7.0521 36 1 1.4794 -0.0565 6.9139 37 1 0.5475 0.5423 4.7194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259770765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:21 Heat of formation + Delta-G solvation = -38.938882 kcal Electronic energy + Delta-G solvation = -18384.605592 eV Core-core repulsion = 15704.944456 eV Total energy + Delta-G solvation = -2679.661136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.96129 -37.20125 -34.71992 -34.07634 -31.51855 -29.37336 -29.07875 -26.90656 -25.89087 -23.76488 -22.56138 -21.54415 -20.14133 -18.68140 -17.01577 -16.29457 -15.47916 -15.15588 -14.69432 -14.12382 -14.03368 -13.51429 -13.29936 -13.03623 -12.86747 -12.47875 -12.18557 -11.77341 -11.75723 -11.33442 -11.31479 -10.96854 -10.88157 -10.71798 -10.63169 -10.48509 -10.21701 -10.06073 -9.63488 -9.19316 -8.98799 -8.54781 -7.91321 -7.30039 -6.12276 -4.16989 2.16026 2.21444 3.25611 3.30606 3.33861 4.02319 4.33011 4.62188 5.14527 5.24506 5.31091 5.38434 5.60053 5.65440 5.82208 5.92360 5.95607 6.02664 6.07317 6.14479 6.15965 6.25481 6.30347 6.35036 6.43771 6.56251 6.66750 6.77513 6.86434 6.90582 7.04591 7.20636 7.26519 7.49459 7.62739 7.78680 7.79565 8.18785 8.36952 8.90326 9.46531 10.94836 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.010718 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.232601 B = 2611.866856 C = 3832.104234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.144 4.144 4 C 0.101 3.899 5 H 0.075 0.925 6 C -0.133 4.133 7 C 0.065 3.935 8 H 0.077 0.923 9 C -0.506 4.506 10 H 0.053 0.947 11 C 0.068 3.932 12 N -0.890 5.890 13 Si 0.891 3.109 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.107 4.107 18 C -0.081 4.081 19 C -0.164 4.164 20 C -0.116 4.116 21 C -0.161 4.161 22 C 0.119 3.881 23 O -0.321 6.321 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 6.192 0.895 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.201 4.201 4 C 0.045 3.955 5 H 0.093 0.907 6 C -0.172 4.172 7 C 0.047 3.953 8 H 0.095 0.905 9 C -0.544 4.544 10 H 0.072 0.928 11 C -0.134 4.134 12 N -0.528 5.528 13 Si 0.718 3.282 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.108 4.108 18 C -0.099 4.099 19 C -0.182 4.182 20 C -0.134 4.134 21 C -0.180 4.180 22 C 0.074 3.926 23 O -0.236 6.236 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.706 6.279 0.769 9.219 hybrid contribution 0.041 -1.274 -0.265 1.302 sum -6.666 5.004 0.505 8.350 Atomic orbital electron populations 1.21787 0.95319 1.01540 1.01432 1.21202 0.95867 0.96877 0.96663 1.21805 1.01354 0.95748 1.01212 1.22480 0.95781 0.94982 0.82237 0.90740 1.22381 0.93315 0.98914 1.02549 1.18009 0.97018 0.94423 0.85886 0.90546 1.20902 0.98262 0.92824 1.42363 0.92845 1.24958 0.94820 0.98360 0.95308 1.69897 1.01480 1.36791 1.44597 0.86667 0.77724 0.84726 0.79040 1.20091 1.21186 1.20125 1.20661 0.94541 0.97492 0.98146 1.20947 0.99795 0.97882 0.91251 1.20904 0.97029 1.02334 0.97930 1.20621 0.96613 1.00031 0.96104 1.20389 1.00965 1.06049 0.90610 1.18746 0.92292 0.96515 0.85092 1.85785 1.63747 1.60686 1.13349 0.92128 0.92948 0.93293 0.89944 0.92213 0.92328 0.93488 0.90821 0.93764 0.92633 0.86157 0.87163 0.86876 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.06 37.16 0.34 -1.68 16 2 C -0.09 -1.39 2.82 -90.62 -0.26 -1.65 16 3 C -0.14 -2.12 8.70 37.15 0.32 -1.80 16 4 C 0.10 1.98 2.47 -26.52 -0.07 1.91 16 5 H 0.07 1.60 7.38 -51.93 -0.38 1.22 16 6 C -0.13 -2.90 4.41 -26.48 -0.12 -3.02 16 7 C 0.06 1.59 2.38 -92.86 -0.22 1.37 16 8 H 0.08 2.07 7.23 -51.93 -0.38 1.69 16 9 C -0.51 -13.35 7.40 -34.44 -0.25 -13.61 16 10 H 0.05 1.44 7.75 -52.49 -0.41 1.04 16 11 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 12 N -0.89 -24.71 12.76 55.43 0.71 -24.00 16 13 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.11 -2.42 5.01 -104.44 -0.52 -2.95 16 18 C -0.08 -1.69 9.61 -39.53 -0.38 -2.07 16 19 C -0.16 -2.94 10.04 -39.61 -0.40 -3.33 16 20 C -0.12 -1.96 10.04 -39.66 -0.40 -2.35 16 21 C -0.16 -2.97 9.94 -39.34 -0.39 -3.36 16 22 C 0.12 2.49 6.47 -39.19 -0.25 2.24 16 23 O -0.32 -6.45 8.60 -19.25 -0.17 -6.62 16 24 H 0.06 0.88 7.72 -51.93 -0.40 0.48 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 29 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.67 8.09 -51.93 -0.42 1.25 16 32 H 0.04 0.92 6.74 -51.93 -0.35 0.57 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 35 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -27.47 298.28 -8.27 -35.74 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.59 Total: 3.20 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -2.70 Total: -28.59 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.71 Total: -24.00 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.17 Total: -6.62 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.47 -8.27 -35.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.195 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds