Wall clock time and date at job start Mon Mar 30 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47515 * 2 1 4 4 C 1.53006 * 109.46846 * 120.00016 * 2 1 3 5 5 H 1.09003 * 109.67717 * 59.47978 * 4 2 1 6 6 C 1.53411 * 109.68134 * 179.97438 * 4 2 1 7 7 C 1.53067 * 108.29654 * 184.42789 * 6 4 2 8 8 H 1.09005 * 109.43901 * 191.72616 * 7 6 4 9 9 C 1.50708 * 109.43707 * 71.86039 * 7 6 4 10 10 H 1.07998 * 119.99583 * 275.02994 * 9 7 6 11 11 C 1.37872 * 120.00189 * 95.03112 * 9 7 6 12 12 N 1.31514 * 120.00026 * 5.19098 * 11 9 7 13 13 Si 1.86800 * 120.00043 * 185.19781 * 11 9 7 14 14 H 1.48504 * 109.47004 * 59.99466 * 13 11 9 15 15 H 1.48494 * 109.47381 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47024 * 300.00052 * 13 11 9 17 17 C 1.50762 * 109.68527 * 311.78990 * 7 6 4 18 18 C 1.38509 * 118.77102 * 197.82335 * 17 7 6 19 19 C 1.38099 * 120.31680 * 180.16209 * 18 17 7 20 20 C 1.38289 * 119.98721 * 0.02562 * 19 18 17 21 21 C 1.37972 * 119.95665 * 359.92205 * 20 19 18 22 22 C 1.38373 * 121.40140 * 17.85154 * 17 7 6 23 23 O 1.35842 * 121.80472 * 359.47328 * 22 17 7 24 24 H 1.08997 * 109.47222 * 299.99963 * 1 2 3 25 25 H 1.08999 * 109.47359 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46890 * 59.99669 * 1 2 3 27 27 H 1.09007 * 109.46981 * 239.99536 * 2 1 3 28 28 H 1.09007 * 109.47374 * 59.99777 * 3 2 1 29 29 H 1.08994 * 109.47300 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47312 * 300.00073 * 3 2 1 31 31 H 1.09005 * 109.69790 * 304.13342 * 6 4 2 32 32 H 1.09002 * 109.69543 * 64.72895 * 6 4 2 33 33 H 0.97002 * 119.99669 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.83693 * 0.14405 * 18 17 7 35 35 H 1.08004 * 120.00560 * 180.02562 * 19 18 17 36 36 H 1.08003 * 120.02132 * 179.97438 * 20 19 18 37 37 H 1.07996 * 119.88916 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6708 -1.7469 1.2574 6 6 3.5740 -0.7247 1.2539 7 6 4.0491 -1.5472 2.4542 8 1 5.1185 -1.3934 2.5990 9 6 3.7840 -3.0084 2.1974 10 1 2.8153 -3.4292 2.4230 11 6 4.7781 -3.8079 1.6745 12 7 5.9868 -3.3217 1.4952 13 14 4.4080 -5.5817 1.2205 14 1 3.3401 -5.6162 0.1892 15 1 5.6355 -6.2216 0.6829 16 1 3.9539 -6.3173 2.4280 17 6 3.3077 -1.1129 3.6930 18 6 3.8276 -1.4468 4.9326 19 6 3.1729 -1.0681 6.0881 20 6 1.9921 -0.3525 6.0106 21 6 1.4699 -0.0162 4.7786 22 6 2.1280 -0.3941 3.6123 23 8 1.5876 -0.0367 2.4183 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 3.9432 -1.1734 0.3316 32 1 3.9434 0.2972 1.3395 33 1 6.6863 -3.8844 1.1277 34 1 4.7493 -2.0062 4.9957 35 1 3.5831 -1.3308 7.0521 36 1 1.4794 -0.0565 6.9139 37 1 0.5475 0.5423 4.7194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:21 Heat of formation + Delta-G solvation = -52.167485 kcal Electronic energy + Delta-G solvation = -18385.179227 eV Core-core repulsion = 15704.944456 eV Total energy + Delta-G solvation = -2680.234772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.55163 -38.67975 -36.32811 -35.70218 -33.42828 -30.92953 -30.58273 -28.18642 -27.66972 -25.46713 -24.19612 -23.11213 -21.60881 -20.30325 -18.62982 -18.17596 -17.14247 -16.66534 -16.51978 -15.65887 -15.41165 -14.94906 -14.80437 -14.66799 -14.49901 -14.18476 -13.60661 -13.34924 -13.09258 -12.94947 -12.86085 -12.75912 -12.54455 -12.19027 -12.07884 -12.04298 -11.75346 -11.67861 -11.23230 -11.03598 -10.79747 -10.52968 -9.51401 -8.89294 -8.16970 -6.29231 0.61850 0.68395 1.37590 1.37948 1.46239 2.37359 2.49620 3.03741 3.12445 3.86039 3.94436 4.11219 4.15717 4.20868 4.29846 4.46229 4.54054 4.61731 4.65413 4.70648 4.85756 4.86637 4.98928 5.03206 5.06821 5.14870 5.21853 5.28944 5.41035 5.44898 5.48504 5.52366 5.61248 5.69539 5.75896 6.02995 6.12484 6.20909 6.70534 6.83607 7.36551 8.88540 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.010718 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.232601 B = 2611.866856 C = 3832.104234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.139 4.139 4 C 0.108 3.892 5 H 0.050 0.950 6 C -0.124 4.124 7 C 0.064 3.936 8 H 0.036 0.964 9 C -0.511 4.511 10 H 0.041 0.959 11 C 0.021 3.979 12 N -0.922 5.922 13 Si 0.950 3.050 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.274 1.274 17 C -0.141 4.141 18 C -0.104 4.104 19 C -0.157 4.157 20 C -0.100 4.100 21 C -0.159 4.159 22 C 0.097 3.903 23 O -0.317 6.317 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 6.953 1.681 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 C -0.196 4.196 4 C 0.052 3.948 5 H 0.068 0.932 6 C -0.162 4.162 7 C 0.045 3.955 8 H 0.054 0.946 9 C -0.549 4.549 10 H 0.060 0.940 11 C -0.178 4.178 12 N -0.560 5.560 13 Si 0.775 3.225 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.199 1.199 17 C -0.142 4.142 18 C -0.122 4.122 19 C -0.175 4.175 20 C -0.118 4.118 21 C -0.178 4.178 22 C 0.052 3.948 23 O -0.232 6.232 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.969 7.044 1.559 11.510 hybrid contribution 0.737 -1.462 -0.391 1.683 sum -8.232 5.582 1.168 10.014 Atomic orbital electron populations 1.21738 0.93384 1.01780 1.02555 1.21243 0.97476 0.97239 0.94526 1.21760 1.00534 0.94963 1.02342 1.22410 0.93807 0.94646 0.83946 0.93218 1.22189 0.95383 0.98266 1.00401 1.17848 0.95162 0.94161 0.88315 0.94612 1.21052 0.97647 0.94120 1.42091 0.94045 1.25667 0.94617 1.02160 0.95374 1.70022 1.02233 1.38136 1.45648 0.85740 0.77777 0.80178 0.78833 1.19288 1.20621 1.19906 1.20559 0.95968 0.99939 0.97689 1.20991 0.99928 0.98964 0.92316 1.21253 0.97050 1.01226 0.97945 1.21154 0.95612 0.97732 0.97255 1.20807 1.01550 1.05355 0.90050 1.19061 0.92301 0.97090 0.86321 1.85793 1.63526 1.60585 1.13253 0.92581 0.93196 0.90536 0.89464 0.92785 0.93599 0.90583 0.92706 0.93402 0.92662 0.88056 0.83947 0.82188 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.06 71.98 0.65 -2.91 16 2 C -0.09 -2.67 2.82 -10.79 -0.03 -2.70 16 3 C -0.14 -3.88 8.70 71.98 0.63 -3.26 16 4 C 0.11 4.30 2.47 30.73 0.08 4.38 16 5 H 0.05 2.21 7.38 -2.39 -0.02 2.19 16 6 C -0.12 -5.67 4.41 30.75 0.14 -5.54 16 7 C 0.06 3.30 2.38 -12.24 -0.03 3.27 16 8 H 0.04 2.09 7.23 -2.38 -0.02 2.08 16 9 C -0.51 -28.29 7.40 25.60 0.19 -28.10 16 10 H 0.04 2.34 7.75 -2.91 -0.02 2.31 16 11 C 0.02 1.16 5.45 84.65 0.46 1.62 16 12 N -0.92 -53.48 12.76 21.45 0.27 -53.21 16 13 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 C -0.14 -6.54 5.01 -19.75 -0.10 -6.64 16 18 C -0.10 -4.45 9.61 22.30 0.21 -4.23 16 19 C -0.16 -5.27 10.04 22.25 0.22 -5.05 16 20 C -0.10 -2.98 10.04 22.22 0.22 -2.76 16 21 C -0.16 -5.40 9.94 22.43 0.22 -5.18 16 22 C 0.10 4.05 6.47 22.52 0.15 4.19 16 23 O -0.32 -12.63 8.60 -91.78 -0.79 -13.42 16 24 H 0.06 1.51 7.72 -2.39 -0.02 1.49 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.05 1.57 7.66 -2.38 -0.02 1.55 16 29 H 0.04 1.38 6.56 -2.39 -0.02 1.36 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 2.64 8.09 -2.38 -0.02 2.62 16 32 H 0.05 2.09 6.74 -2.39 -0.02 2.08 16 33 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 36 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -61.92 298.28 5.56 -56.36 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.03 Total: 17.54 kcal Atomic # 6 Polarization: -55.93 SS G_CDS: 3.01 Total: -52.92 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.27 Total: -53.21 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.79 Total: -13.42 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -61.92 5.56 -56.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.197 kcal (2) G-P(sol) polarization free energy of solvation -61.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds