Wall clock time and date at job start Mon Mar 30 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00491 * 2 1 4 4 H 1.48497 * 109.47085 * 270.00113 * 3 2 1 5 5 H 1.48493 * 109.47090 * 30.00151 * 3 2 1 6 6 H 1.48500 * 109.47094 * 150.00092 * 3 2 1 7 7 C 1.37887 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00087 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.38390 * 119.99869 * 125.00192 * 11 10 9 13 13 N 1.32124 * 119.99467 * 179.97438 * 12 11 10 14 14 C 1.32150 * 120.00375 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00357 * 179.97438 * 14 13 12 16 16 C 1.54262 * 110.03013 * 260.86519 * 15 14 13 17 17 C 1.54965 * 104.15852 * 217.13472 * 16 15 14 18 18 C 1.54890 * 102.78001 * 37.88449 * 17 16 15 19 19 C 1.53867 * 110.03335 * 143.64159 * 15 14 13 20 20 C 1.38345 * 120.00073 * 0.02562 * 14 13 12 21 21 N 1.32118 * 120.00274 * 304.98158 * 11 10 9 22 22 H 0.97001 * 119.99087 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47026 * 60.00201 * 9 7 2 24 24 H 1.09002 * 109.47130 * 300.00389 * 9 7 2 25 25 H 1.09003 * 109.46850 * 60.00225 * 10 9 7 26 26 H 1.08998 * 109.46659 * 300.00582 * 10 9 7 27 27 H 1.07992 * 120.00428 * 0.02562 * 12 11 10 28 28 H 1.09000 * 110.00960 * 22.25090 * 15 14 13 29 29 H 1.09004 * 110.49105 * 335.77426 * 16 15 14 30 30 H 1.09000 * 110.48927 * 98.42608 * 16 15 14 31 31 H 1.09003 * 110.72012 * 279.57362 * 17 16 15 32 32 H 1.08996 * 110.76852 * 156.22216 * 17 16 15 33 33 H 1.08992 * 110.48966 * 203.40988 * 18 17 16 34 34 H 1.09004 * 110.59557 * 80.81979 * 18 17 16 35 35 H 1.08995 * 110.03126 * 238.56943 * 19 15 14 36 36 H 1.08998 * 110.03768 * 359.95630 * 19 15 14 37 37 H 1.07997 * 119.99887 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0214 -2.6368 -0.0010 11 6 5.5284 -2.6369 -0.0009 12 6 6.2202 -3.3243 0.9809 13 7 7.5415 -3.3248 0.9805 14 6 8.2023 -2.6693 0.0425 15 6 9.7093 -2.6693 0.0424 16 6 10.2378 -1.3646 0.6735 17 6 11.4930 -1.0184 -0.1667 18 6 11.0669 -1.4199 -1.6007 19 6 10.2364 -2.7049 -1.4027 20 6 7.5106 -1.9820 -0.9390 21 7 6.1891 -1.9810 -0.9384 22 1 -0.4849 0.8401 0.0004 23 1 3.8752 -0.6807 0.8889 24 1 3.8745 -0.6802 -0.8911 25 1 3.6577 -3.1508 -0.8908 26 1 3.6583 -3.1504 0.8892 27 1 5.6803 -3.8611 1.7468 28 1 10.0823 -3.5302 0.5973 29 1 9.4936 -0.5723 0.5913 30 1 10.5090 -1.5278 1.7165 31 1 12.3503 -1.6067 0.1604 32 1 11.7119 0.0480 -0.1131 33 1 11.9431 -1.6231 -2.2163 34 1 10.4572 -0.6376 -2.0528 35 1 10.8660 -3.5826 -1.5490 36 1 9.4023 -2.7230 -2.1041 37 1 8.0507 -1.4460 -1.7054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:23 Heat of formation + Delta-G solvation = 16.783500 kcal Electronic energy + Delta-G solvation = -17165.733899 eV Core-core repulsion = 14520.781818 eV Total energy + Delta-G solvation = -2644.952081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.10362 -38.25555 -34.81736 -33.51281 -32.32771 -30.75916 -28.97813 -28.20062 -25.40168 -24.46914 -22.70899 -20.91054 -20.43382 -20.02831 -17.59534 -16.92733 -16.41701 -15.61422 -15.34797 -14.93473 -14.52852 -14.14307 -13.58082 -13.43525 -13.20796 -12.74488 -12.36167 -11.88764 -11.52702 -11.42623 -11.31997 -11.30984 -11.28563 -11.03779 -10.96769 -10.85767 -10.76973 -10.19344 -10.03475 -9.80346 -9.21529 -8.71352 -8.63691 -8.52186 -6.04451 -4.02539 0.99986 1.39324 3.33095 3.39656 3.45106 3.85600 4.01945 4.31213 4.45217 4.46662 4.48948 4.67919 4.73481 5.00301 5.17653 5.23343 5.30375 5.30550 5.38935 5.42320 5.51201 5.54894 5.58924 5.66625 5.77583 5.85753 5.96973 6.05671 6.14300 6.23773 6.32364 6.56914 6.79500 7.27405 7.40647 7.55874 7.78125 8.08353 8.51616 8.99538 9.58290 11.08812 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032764 B = 0.004788 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.401914 B = 5845.942997 C = 6314.459438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.003 4.003 10 C -0.057 4.057 11 C 0.097 3.903 12 C 0.046 3.954 13 N -0.439 5.439 14 C 0.062 3.938 15 C -0.035 4.035 16 C -0.114 4.114 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.124 4.124 20 C 0.056 3.944 21 N -0.431 5.431 22 H 0.263 0.737 23 H 0.012 0.988 24 H 0.024 0.976 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.168 0.832 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.763 -4.460 -0.838 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.041 4.041 10 C -0.095 4.095 11 C -0.042 4.042 12 C -0.114 4.114 13 N -0.154 5.154 14 C -0.078 4.078 15 C -0.055 4.055 16 C -0.152 4.152 17 C -0.161 4.161 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.105 4.105 21 N -0.145 5.145 22 H 0.073 0.927 23 H 0.030 0.970 24 H 0.043 0.957 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.185 0.815 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 22.582 -4.354 -0.832 23.013 hybrid contribution 0.262 0.917 0.039 0.955 sum 22.844 -3.437 -0.793 23.114 Atomic orbital electron populations 1.69912 1.06256 1.26900 1.51114 1.24982 0.94693 0.99102 0.94470 0.86785 0.80261 0.83669 0.78633 1.20156 1.21402 1.19212 1.21116 0.89226 0.94601 1.51029 0.90812 1.19501 0.96939 0.90739 0.96948 1.20607 0.84346 1.01785 1.02781 1.22904 0.99717 0.91254 0.90358 1.23660 0.90202 0.98534 0.99001 1.68184 1.08930 1.15841 1.22398 1.22064 0.97177 0.95855 0.92712 1.20599 0.87947 0.99741 0.97193 1.22435 0.97280 0.96119 0.99377 1.22515 0.97480 1.01134 0.95001 1.22387 0.99566 0.97307 0.97062 1.22351 0.99941 0.98563 0.95298 1.23556 0.90896 0.97587 0.98435 1.68394 1.07865 1.15005 1.23263 0.92713 0.96964 0.95726 0.90095 0.90469 0.81461 0.89189 0.91380 0.91144 0.91341 0.91369 0.91480 0.91354 0.91168 0.91021 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.31 27.47 -169.99 -4.67 17.65 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.08 3.90 -27.88 -0.11 -0.19 16 10 C -0.06 -1.12 5.57 -27.88 -0.16 -1.28 16 11 C 0.10 1.76 6.18 -82.41 -0.51 1.25 16 12 C 0.05 0.73 10.85 -17.37 -0.19 0.54 16 13 N -0.44 -6.82 10.42 -9.29 -0.10 -6.92 16 14 C 0.06 0.87 5.64 -82.41 -0.46 0.40 16 15 C -0.03 -0.36 3.29 -90.66 -0.30 -0.66 16 16 C -0.11 -1.09 6.36 -25.03 -0.16 -1.25 16 17 C -0.12 -0.93 6.91 -24.70 -0.17 -1.10 16 18 C -0.13 -0.93 6.83 -25.07 -0.17 -1.10 16 19 C -0.12 -1.05 5.97 -25.61 -0.15 -1.21 16 20 C 0.06 0.83 9.86 -17.37 -0.17 0.66 16 21 N -0.43 -7.90 10.06 -9.29 -0.09 -7.99 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 24 H 0.02 0.62 7.39 -51.93 -0.38 0.23 16 25 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.08 1.39 7.89 -51.93 -0.41 0.98 16 27 H 0.17 2.20 7.95 -52.49 -0.42 1.78 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.65 6.02 -51.93 -0.31 0.34 16 37 H 0.16 1.94 6.80 -52.49 -0.36 1.58 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -32.13 301.66 -8.15 -40.27 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.63 Total: -3.09 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.98 Total: -17.25 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.58 Total: -42.12 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.13 -8.15 -40.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.057 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds