Wall clock time and date at job start Mon Mar 30 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00491 * 2 1 4 4 H 1.48497 * 109.47085 * 270.00113 * 3 2 1 5 5 H 1.48493 * 109.47090 * 30.00151 * 3 2 1 6 6 H 1.48500 * 109.47094 * 150.00092 * 3 2 1 7 7 C 1.37887 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00087 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.38390 * 119.99869 * 125.00192 * 11 10 9 13 13 N 1.32124 * 119.99467 * 179.97438 * 12 11 10 14 14 C 1.32150 * 120.00375 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.00357 * 179.97438 * 14 13 12 16 16 C 1.54262 * 110.03013 * 260.86519 * 15 14 13 17 17 C 1.54965 * 104.15852 * 217.13472 * 16 15 14 18 18 C 1.54890 * 102.78001 * 37.88449 * 17 16 15 19 19 C 1.53867 * 110.03335 * 143.64159 * 15 14 13 20 20 C 1.38345 * 120.00073 * 0.02562 * 14 13 12 21 21 N 1.32118 * 120.00274 * 304.98158 * 11 10 9 22 22 H 0.97001 * 119.99087 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47026 * 60.00201 * 9 7 2 24 24 H 1.09002 * 109.47130 * 300.00389 * 9 7 2 25 25 H 1.09003 * 109.46850 * 60.00225 * 10 9 7 26 26 H 1.08998 * 109.46659 * 300.00582 * 10 9 7 27 27 H 1.07992 * 120.00428 * 0.02562 * 12 11 10 28 28 H 1.09000 * 110.00960 * 22.25090 * 15 14 13 29 29 H 1.09004 * 110.49105 * 335.77426 * 16 15 14 30 30 H 1.09000 * 110.48927 * 98.42608 * 16 15 14 31 31 H 1.09003 * 110.72012 * 279.57362 * 17 16 15 32 32 H 1.08996 * 110.76852 * 156.22216 * 17 16 15 33 33 H 1.08992 * 110.48966 * 203.40988 * 18 17 16 34 34 H 1.09004 * 110.59557 * 80.81979 * 18 17 16 35 35 H 1.08995 * 110.03126 * 238.56943 * 19 15 14 36 36 H 1.08998 * 110.03768 * 359.95630 * 19 15 14 37 37 H 1.07997 * 119.99887 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1295 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0214 -2.6368 -0.0010 11 6 5.5284 -2.6369 -0.0009 12 6 6.2202 -3.3243 0.9809 13 7 7.5415 -3.3248 0.9805 14 6 8.2023 -2.6693 0.0425 15 6 9.7093 -2.6693 0.0424 16 6 10.2378 -1.3646 0.6735 17 6 11.4930 -1.0184 -0.1667 18 6 11.0669 -1.4199 -1.6007 19 6 10.2364 -2.7049 -1.4027 20 6 7.5106 -1.9820 -0.9390 21 7 6.1891 -1.9810 -0.9384 22 1 -0.4849 0.8401 0.0004 23 1 3.8752 -0.6807 0.8889 24 1 3.8745 -0.6802 -0.8911 25 1 3.6577 -3.1508 -0.8908 26 1 3.6583 -3.1504 0.8892 27 1 5.6803 -3.8611 1.7468 28 1 10.0823 -3.5302 0.5973 29 1 9.4936 -0.5723 0.5913 30 1 10.5090 -1.5278 1.7165 31 1 12.3503 -1.6067 0.1604 32 1 11.7119 0.0480 -0.1131 33 1 11.9431 -1.6231 -2.2163 34 1 10.4572 -0.6376 -2.0528 35 1 10.8660 -3.5826 -1.5490 36 1 9.4023 -2.7230 -2.1041 37 1 8.0507 -1.4460 -1.7054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:22 Heat of formation + Delta-G solvation = -2.791489 kcal Electronic energy + Delta-G solvation = -17166.582734 eV Core-core repulsion = 14520.781818 eV Total energy + Delta-G solvation = -2645.800917 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.28941 -39.05814 -36.34773 -35.08713 -34.04436 -32.17504 -29.64699 -29.50371 -26.93608 -25.68308 -24.17765 -22.15560 -21.52100 -20.93465 -19.09423 -18.73449 -17.47487 -16.60506 -16.41393 -16.32496 -15.92619 -15.54466 -14.95751 -14.78755 -14.42902 -14.21705 -13.85736 -13.33995 -12.98760 -12.71183 -12.54497 -12.25560 -12.18173 -12.00890 -11.97129 -11.91645 -11.84415 -11.76724 -11.61382 -11.41528 -11.39667 -10.78710 -9.94972 -9.89397 -8.31718 -6.34873 -0.20633 0.15447 1.32572 1.32788 1.45134 2.33157 2.65786 2.98484 3.03842 3.24262 3.47606 3.63660 3.77294 3.86709 3.97782 4.16382 4.35907 4.48132 4.52529 4.58577 4.61220 4.64216 4.70267 4.81058 4.83964 4.97279 5.00182 5.10101 5.24691 5.29803 5.33614 5.38584 5.44674 5.49186 5.50966 5.63823 6.24838 6.34575 6.72263 6.85111 7.29752 8.84747 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032764 B = 0.004788 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.401914 B = 5845.942997 C = 6314.459438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.531 4.531 8 H 0.043 0.957 9 C 0.005 3.995 10 C -0.047 4.047 11 C 0.072 3.928 12 C 0.050 3.950 13 N -0.451 5.451 14 C 0.074 3.926 15 C -0.035 4.035 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.121 4.121 20 C 0.052 3.948 21 N -0.461 5.461 22 H 0.267 0.733 23 H 0.009 0.991 24 H 0.016 0.984 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.191 0.809 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.838 -3.991 -0.866 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.569 4.569 8 H 0.062 0.938 9 C -0.033 4.033 10 C -0.086 4.086 11 C -0.066 4.066 12 C -0.109 4.109 13 N -0.166 5.166 14 C -0.067 4.067 15 C -0.055 4.055 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.109 4.109 21 N -0.176 5.176 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.035 0.965 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.208 0.792 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 25.654 -3.904 -0.851 25.963 hybrid contribution -0.639 0.696 0.034 0.945 sum 25.014 -3.208 -0.818 25.233 Atomic orbital electron populations 1.70044 1.07987 1.28119 1.52577 1.25874 0.95519 1.03044 0.94204 0.85739 0.79152 0.79107 0.79108 1.19308 1.20460 1.18288 1.21459 0.91554 0.93545 1.50297 0.93847 1.19337 0.94002 0.93845 0.96137 1.20361 0.86210 0.98790 1.03224 1.22565 0.98562 0.93562 0.91943 1.23909 0.90500 0.97835 0.98614 1.68317 1.08669 1.16534 1.23056 1.22674 0.98902 0.93764 0.91330 1.20757 0.85397 1.00419 0.98879 1.22433 0.97908 0.94991 0.99917 1.22507 0.96711 1.01824 0.94484 1.22400 0.99954 0.96524 0.97240 1.22357 1.00082 0.99925 0.93546 1.23978 0.89860 0.97758 0.99304 1.68282 1.09660 1.15771 1.23917 0.92393 0.97282 0.96545 0.90822 0.89107 0.79235 0.88857 0.92888 0.90996 0.90114 0.90702 0.89880 0.91520 0.89812 0.91622 0.79564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 2 C 0.01 0.65 5.47 84.66 0.46 1.11 16 3 Si 0.94 46.09 27.47 68.60 1.88 47.97 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 7 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 8 H 0.04 2.72 7.99 -2.91 -0.02 2.70 16 9 C 0.00 0.23 3.90 29.85 0.12 0.34 16 10 C -0.05 -1.89 5.57 29.85 0.17 -1.72 16 11 C 0.07 2.58 6.18 42.55 0.26 2.84 16 12 C 0.05 1.53 10.85 84.69 0.92 2.45 16 13 N -0.45 -13.27 10.42 -183.30 -1.91 -15.18 16 14 C 0.07 1.93 5.64 42.54 0.24 2.17 16 15 C -0.03 -0.64 3.29 -10.82 -0.04 -0.67 16 16 C -0.11 -1.91 6.36 31.69 0.20 -1.71 16 17 C -0.12 -1.39 6.91 31.91 0.22 -1.17 16 18 C -0.12 -1.42 6.83 31.67 0.22 -1.20 16 19 C -0.12 -1.71 5.97 31.32 0.19 -1.52 16 20 C 0.05 1.46 9.86 84.67 0.83 2.29 16 21 N -0.46 -16.57 10.06 -183.30 -1.84 -18.41 16 22 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 23 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 24 H 0.02 0.82 7.39 -2.39 -0.02 0.80 16 25 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.09 3.28 7.89 -2.39 -0.02 3.26 16 27 H 0.19 4.68 7.95 -2.91 -0.02 4.66 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.05 7.84 -2.38 -0.02 1.03 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.02 6.02 -2.39 -0.01 1.01 16 37 H 0.19 4.10 6.80 -2.91 -0.02 4.08 16 Total: -1.00 -69.35 301.66 3.45 -65.90 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 0.99 Total: 6.82 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.04 Total: -27.55 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.45 Total: -93.14 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.97 kcal Total: -69.35 3.45 -65.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.107 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds