Wall clock time and date at job start Mon Mar 30 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48495 * 109.47041 * 239.99780 * 3 2 1 5 5 H 1.48498 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46895 * 119.99655 * 3 2 1 7 7 C 1.37872 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47335 * 180.02562 * 10 9 7 12 12 C 1.38885 * 120.75220 * 90.00049 * 11 10 9 13 13 C 1.38021 * 119.33146 * 179.72615 * 12 11 10 14 14 N 1.31975 * 120.85607 * 359.97438 * 13 12 11 15 15 C 1.32393 * 121.62238 * 359.97438 * 14 13 12 16 16 N 1.39002 * 119.70320 * 180.02562 * 15 14 13 17 17 C 1.48536 * 111.00086 * 242.60917 * 16 15 14 18 18 C 1.54935 * 103.22904 * 159.72302 * 17 16 15 19 19 C 1.54600 * 102.91831 * 322.58711 * 18 17 16 20 20 C 1.47898 * 111.00219 * 0.02562 * 16 15 14 21 21 C 1.38298 * 120.74401 * 269.71598 * 11 10 9 22 22 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47129 * 59.99616 * 9 7 2 24 24 H 1.09002 * 109.47163 * 299.99619 * 9 7 2 25 25 H 1.08995 * 109.47369 * 59.99234 * 10 9 7 26 26 H 1.09002 * 109.46759 * 299.99957 * 10 9 7 27 27 H 1.08000 * 120.33314 * 359.74275 * 12 11 10 28 28 H 1.07998 * 119.57019 * 179.97438 * 13 12 11 29 29 H 1.09008 * 110.66274 * 278.15770 * 17 16 15 30 30 H 1.08997 * 110.66798 * 41.28147 * 17 16 15 31 31 H 1.08996 * 110.72744 * 204.22960 * 18 17 16 32 32 H 1.09002 * 110.72179 * 80.94218 * 18 17 16 33 33 H 1.09005 * 110.30186 * 263.03945 * 19 18 17 34 34 H 1.08997 * 110.30842 * 140.87431 * 19 18 17 35 35 H 1.08998 * 109.91752 * 333.51004 * 20 16 15 36 36 H 1.09007 * 109.91731 * 94.80195 * 20 16 15 37 37 H 1.08004 * 120.45571 * 0.25149 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 -0.0001 12 6 1.1373 -5.5818 -1.1940 13 6 0.4524 -6.7796 -1.1603 14 7 0.1329 -7.3446 -0.0112 15 6 0.4539 -6.7907 1.1476 16 7 0.0978 -7.4208 2.3343 17 6 -0.8360 -6.5787 3.1249 18 6 -1.5117 -7.5968 4.0774 19 6 -1.6689 -8.8511 3.1874 20 6 -0.6246 -8.6836 2.0679 21 6 1.1431 -5.5827 1.1882 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6043 0.8904 26 1 2.8720 -3.6042 -0.8895 27 1 1.3950 -5.1272 -2.1391 28 1 0.1743 -7.2607 -2.0864 29 1 -0.2887 -5.8258 3.6921 30 1 -1.5753 -6.1102 2.4753 31 1 -2.4852 -7.2316 4.4047 32 1 -0.8705 -7.8088 4.9330 33 1 -2.6731 -8.8919 2.7654 34 1 -1.4633 -9.7526 3.7645 35 1 -1.1231 -8.6291 1.1002 36 1 0.0734 -9.5208 2.0824 37 1 1.4035 -5.1326 2.1349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259805639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:24 Heat of formation + Delta-G solvation = 29.961140 kcal Electronic energy + Delta-G solvation = -17244.479186 eV Core-core repulsion = 14600.098530 eV Total energy + Delta-G solvation = -2644.380656 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47517 -38.19576 -34.65171 -32.71479 -32.37723 -29.81025 -28.81116 -28.71769 -25.43757 -23.16793 -22.75202 -21.28737 -20.83529 -19.70378 -17.04387 -16.45068 -16.25924 -15.61491 -15.39544 -14.53725 -14.43092 -14.15305 -13.64729 -12.99365 -12.87164 -12.71558 -12.38418 -12.17696 -11.98746 -11.53307 -11.37181 -11.26843 -11.16307 -10.92230 -10.72344 -10.62856 -9.97618 -9.91746 -9.61162 -9.25281 -9.06919 -8.74387 -8.39765 -7.92159 -6.04431 -4.08087 1.48655 1.71138 3.30922 3.35514 3.37783 3.71215 4.18399 4.42242 4.47445 4.60380 4.88359 4.90571 5.26387 5.29023 5.31331 5.39911 5.47193 5.56795 5.60011 5.69474 5.73091 5.81541 5.93403 5.97787 6.05179 6.13673 6.27714 6.30886 6.54170 6.67605 6.76294 6.91792 6.99118 7.41399 7.60196 7.72290 7.93891 8.27409 8.33859 8.98222 9.56383 11.06588 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030652 B = 0.004718 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.273407 B = 5933.132828 C = 6507.522853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.032 3.968 10 C -0.082 4.082 11 C 0.003 3.997 12 C -0.195 4.195 13 C 0.115 3.885 14 N -0.533 5.533 15 C 0.294 3.706 16 N -0.463 5.463 17 C 0.042 3.958 18 C -0.123 4.123 19 C -0.133 4.133 20 C 0.036 3.964 21 C -0.177 4.177 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.150 0.850 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 -15.420 3.986 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.120 4.120 11 C -0.005 4.005 12 C -0.216 4.216 13 C -0.041 4.041 14 N -0.248 5.248 15 C 0.063 3.937 16 N -0.182 5.182 17 C -0.084 4.084 18 C -0.161 4.161 19 C -0.171 4.171 20 C -0.091 4.091 21 C -0.199 4.199 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.150 0.850 28 H 0.167 0.833 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.280 -16.205 4.310 16.922 hybrid contribution 0.280 1.875 -0.501 1.961 sum -1.999 -14.329 3.809 14.961 Atomic orbital electron populations 1.69962 1.06092 1.26826 1.50440 1.25016 0.94843 0.99281 0.95158 0.86633 0.79571 0.82991 0.78679 1.20183 1.21256 1.20171 1.21186 0.93054 0.90834 1.51183 0.92533 1.19054 0.93554 0.90324 0.97582 1.20908 0.98498 0.90654 1.01893 1.20683 0.92505 0.95290 0.91989 1.21959 1.03149 0.97308 0.99146 1.22368 0.94194 0.92584 0.94994 1.67411 1.22889 1.36357 0.98144 1.19832 0.94519 0.90774 0.88592 1.62015 1.37718 1.04750 1.13724 1.23327 0.93776 0.95885 0.95382 1.22507 1.00725 0.94856 0.98045 1.22457 0.99104 0.98615 0.96924 1.22838 0.95606 0.91377 0.99260 1.21441 1.03093 0.95879 0.99513 0.92866 0.96364 0.96428 0.91692 0.91609 0.85013 0.83252 0.89080 0.92648 0.90624 0.90510 0.91400 0.91023 0.90143 0.90496 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 10 C -0.08 -1.68 5.33 -27.89 -0.15 -1.83 16 11 C 0.00 0.06 5.17 -104.36 -0.54 -0.48 16 12 C -0.19 -3.25 9.81 -39.42 -0.39 -3.64 16 13 C 0.11 1.78 11.17 -17.57 -0.20 1.58 16 14 N -0.53 -8.89 8.14 -12.44 -0.10 -8.99 16 15 C 0.29 4.96 6.21 -155.02 -0.96 3.99 16 16 N -0.46 -6.79 5.29 -169.22 -0.90 -7.69 16 17 C 0.04 0.54 6.05 -1.90 -0.01 0.53 16 18 C -0.12 -1.22 7.06 -24.87 -0.18 -1.40 16 19 C -0.13 -1.30 6.93 -25.36 -0.18 -1.48 16 20 C 0.04 0.46 6.35 -2.74 -0.02 0.44 16 21 C -0.18 -3.15 9.16 -39.22 -0.36 -3.51 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 26 H 0.07 1.29 8.10 -51.93 -0.42 0.86 16 27 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.06 0.78 8.00 -51.93 -0.42 0.36 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.12 6.50 -51.93 -0.34 0.79 16 36 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 37 H 0.13 2.25 8.05 -52.48 -0.42 1.83 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -30.63 306.40 -9.97 -40.60 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.79 Total: -0.52 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -3.52 Total: -18.45 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.26 Total: -42.62 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.63 -9.97 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.564 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds