Wall clock time and date at job start Mon Mar 30 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48495 * 109.47041 * 239.99780 * 3 2 1 5 5 H 1.48498 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46895 * 119.99655 * 3 2 1 7 7 C 1.37872 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47335 * 180.02562 * 10 9 7 12 12 C 1.38885 * 120.75220 * 90.00049 * 11 10 9 13 13 C 1.38021 * 119.33146 * 179.72615 * 12 11 10 14 14 N 1.31975 * 120.85607 * 359.97438 * 13 12 11 15 15 C 1.32393 * 121.62238 * 359.97438 * 14 13 12 16 16 N 1.39002 * 119.70320 * 180.02562 * 15 14 13 17 17 C 1.48536 * 111.00086 * 242.60917 * 16 15 14 18 18 C 1.54935 * 103.22904 * 159.72302 * 17 16 15 19 19 C 1.54600 * 102.91831 * 322.58711 * 18 17 16 20 20 C 1.47898 * 111.00219 * 0.02562 * 16 15 14 21 21 C 1.38298 * 120.74401 * 269.71598 * 11 10 9 22 22 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47129 * 59.99616 * 9 7 2 24 24 H 1.09002 * 109.47163 * 299.99619 * 9 7 2 25 25 H 1.08995 * 109.47369 * 59.99234 * 10 9 7 26 26 H 1.09002 * 109.46759 * 299.99957 * 10 9 7 27 27 H 1.08000 * 120.33314 * 359.74275 * 12 11 10 28 28 H 1.07998 * 119.57019 * 179.97438 * 13 12 11 29 29 H 1.09008 * 110.66274 * 278.15770 * 17 16 15 30 30 H 1.08997 * 110.66798 * 41.28147 * 17 16 15 31 31 H 1.08996 * 110.72744 * 204.22960 * 18 17 16 32 32 H 1.09002 * 110.72179 * 80.94218 * 18 17 16 33 33 H 1.09005 * 110.30186 * 263.03945 * 19 18 17 34 34 H 1.08997 * 110.30842 * 140.87431 * 19 18 17 35 35 H 1.08998 * 109.91752 * 333.51004 * 20 16 15 36 36 H 1.09007 * 109.91731 * 94.80195 * 20 16 15 37 37 H 1.08004 * 120.45571 * 0.25149 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 -0.0001 12 6 1.1373 -5.5818 -1.1940 13 6 0.4524 -6.7796 -1.1603 14 7 0.1329 -7.3446 -0.0112 15 6 0.4539 -6.7907 1.1476 16 7 0.0978 -7.4208 2.3343 17 6 -0.8360 -6.5787 3.1249 18 6 -1.5117 -7.5968 4.0774 19 6 -1.6689 -8.8511 3.1874 20 6 -0.6246 -8.6836 2.0679 21 6 1.1431 -5.5827 1.1882 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6043 0.8904 26 1 2.8720 -3.6042 -0.8895 27 1 1.3950 -5.1272 -2.1391 28 1 0.1743 -7.2607 -2.0864 29 1 -0.2887 -5.8258 3.6921 30 1 -1.5753 -6.1102 2.4753 31 1 -2.4852 -7.2316 4.4047 32 1 -0.8705 -7.8088 4.9330 33 1 -2.6731 -8.8919 2.7654 34 1 -1.4633 -9.7526 3.7645 35 1 -1.1231 -8.6291 1.1002 36 1 0.0734 -9.5208 2.0824 37 1 1.4035 -5.1326 2.1349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259805639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:24 Heat of formation + Delta-G solvation = 12.938645 kcal Electronic energy + Delta-G solvation = -17245.217337 eV Core-core repulsion = 14600.098530 eV Total energy + Delta-G solvation = -2645.118807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.70893 -39.32158 -36.36056 -34.52087 -33.57479 -31.51911 -29.93686 -29.83946 -27.31374 -24.37740 -24.29770 -22.80377 -21.82520 -21.02401 -18.66395 -17.99448 -17.65746 -16.84090 -16.56670 -16.52434 -15.61802 -15.39234 -14.75920 -14.64225 -14.47303 -14.04117 -13.82628 -13.56616 -13.24344 -12.93633 -12.88612 -12.69343 -12.56237 -12.26140 -12.12202 -11.83018 -11.77466 -11.46764 -11.32380 -10.83921 -10.57008 -10.40026 -10.30144 -9.14368 -8.21336 -6.33621 0.18673 0.33053 1.41037 1.43855 1.51833 2.40267 2.54894 2.90773 3.12133 3.43731 3.64298 3.86030 3.90516 4.04624 4.18737 4.23786 4.29659 4.31868 4.52439 4.58602 4.76719 4.78133 4.80228 4.86319 4.91771 4.96615 5.06446 5.09011 5.12083 5.29522 5.38710 5.45872 5.56153 5.64639 5.74172 5.79932 6.16937 6.19144 6.82369 6.98600 7.36242 8.90196 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030652 B = 0.004718 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.273407 B = 5933.132828 C = 6507.522853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.040 3.960 10 C -0.067 4.067 11 C -0.016 4.016 12 C -0.202 4.202 13 C 0.120 3.880 14 N -0.539 5.539 15 C 0.290 3.710 16 N -0.471 5.471 17 C 0.037 3.963 18 C -0.115 4.115 19 C -0.126 4.126 20 C 0.034 3.966 21 C -0.192 4.192 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.012 1.012 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.188 0.812 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -16.212 4.190 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.003 3.997 10 C -0.104 4.104 11 C -0.024 4.024 12 C -0.223 4.223 13 C -0.036 4.036 14 N -0.254 5.254 15 C 0.059 3.941 16 N -0.190 5.190 17 C -0.089 4.089 18 C -0.153 4.153 19 C -0.164 4.164 20 C -0.093 4.093 21 C -0.214 4.214 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.205 0.795 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.923 -17.015 4.526 17.711 hybrid contribution 0.139 2.052 -0.567 2.134 sum -1.784 -14.963 3.959 15.580 Atomic orbital electron populations 1.70104 1.07907 1.27905 1.51431 1.25978 0.95712 1.03390 0.94534 0.85484 0.78251 0.77938 0.79297 1.18999 1.20946 1.19103 1.21649 0.93723 0.91988 1.50950 0.91687 1.18868 0.93854 0.92162 0.94837 1.20625 0.97439 0.89904 1.02473 1.20590 0.93629 0.94960 0.93263 1.22169 1.03280 0.97844 0.98997 1.22961 0.92705 0.91970 0.95992 1.67552 1.22914 1.36503 0.98427 1.20040 0.94045 0.90443 0.89555 1.62022 1.38489 1.05619 1.12828 1.23409 0.93294 0.96657 0.95530 1.22522 1.01448 0.93787 0.97514 1.22456 0.98547 0.99353 0.96029 1.22917 0.96189 0.90393 0.99819 1.21490 1.03930 0.96689 0.99283 0.92745 0.98935 0.99374 0.91402 0.90647 0.83618 0.79545 0.89352 0.94328 0.88893 0.89477 0.90529 0.88960 0.91540 0.90221 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 2 C 0.00 0.10 5.46 84.65 0.46 0.57 16 3 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.55 -30.74 9.11 25.60 0.23 -30.51 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.04 2.12 4.95 29.85 0.15 2.27 16 10 C -0.07 -2.79 5.33 29.85 0.16 -2.63 16 11 C -0.02 -0.62 5.17 -19.70 -0.10 -0.72 16 12 C -0.20 -6.63 9.81 22.37 0.22 -6.41 16 13 C 0.12 3.54 11.17 84.62 0.95 4.48 16 14 N -0.54 -17.53 8.14 -193.27 -1.57 -19.10 16 15 C 0.29 9.79 6.21 133.07 0.83 10.62 16 16 N -0.47 -13.59 5.29 -689.30 -3.65 -17.24 16 17 C 0.04 0.94 6.05 86.65 0.52 1.46 16 18 C -0.11 -2.04 7.06 31.80 0.22 -1.82 16 19 C -0.13 -2.17 6.93 31.48 0.22 -1.96 16 20 C 0.03 0.81 6.35 86.45 0.55 1.36 16 21 C -0.19 -6.96 9.16 22.50 0.21 -6.76 16 22 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 23 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 26 H 0.07 2.94 8.10 -2.39 -0.02 2.92 16 27 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 28 H 0.19 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.04 1.10 8.00 -2.39 -0.02 1.08 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.80 6.50 -2.39 -0.02 1.78 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.13 4.61 8.05 -2.91 -0.02 4.59 16 Total: -1.00 -66.34 306.40 2.73 -63.61 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.03 Total: 13.50 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.61 Total: -30.05 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -4.94 Total: -92.87 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -66.34 2.73 -63.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.550 kcal (2) G-P(sol) polarization free energy of solvation -66.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds