Wall clock time and date at job start Mon Mar 30 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48507 * 109.47302 * 270.00341 * 3 2 1 5 5 H 1.48499 * 109.47087 * 29.99990 * 3 2 1 6 6 H 1.48495 * 109.47088 * 150.00069 * 3 2 1 7 7 C 1.37874 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00138 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00002 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47018 * 184.52011 * 9 7 2 11 11 H 1.09003 * 109.47053 * 177.76269 * 10 9 7 12 12 C 1.50695 * 109.47355 * 297.76293 * 10 9 7 13 13 C 1.38231 * 119.61480 * 275.00403 * 12 10 9 14 14 C 1.38638 * 119.15976 * 179.97438 * 13 12 10 15 15 C 1.38676 * 118.41644 * 0.02562 * 14 13 12 16 16 C 1.38180 * 119.16653 * 0.27167 * 15 14 13 17 17 N 1.31852 * 119.62027 * 94.97628 * 12 10 9 18 18 N 1.46907 * 109.47490 * 57.76228 * 10 9 7 19 19 C 1.48538 * 110.99727 * 58.51160 * 18 10 9 20 20 C 1.54933 * 103.22611 * 159.72440 * 19 18 10 21 21 C 1.54602 * 102.92240 * 322.58507 * 20 19 18 22 22 C 1.47892 * 111.00032 * 175.90598 * 18 10 9 23 23 H 0.96999 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47402 * 64.52010 * 9 7 2 25 25 H 1.09005 * 109.47111 * 304.51593 * 9 7 2 26 26 H 1.07997 * 120.42102 * 359.97438 * 13 12 10 27 27 H 1.07989 * 120.78882 * 180.02562 * 14 13 12 28 28 H 1.08001 * 120.41102 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.61768 * 179.69991 * 16 15 14 30 30 H 1.09009 * 110.66484 * 278.15558 * 19 18 10 31 31 H 1.09000 * 110.66890 * 41.28304 * 19 18 10 32 32 H 1.08995 * 110.72819 * 204.22907 * 20 19 18 33 33 H 1.08998 * 110.72371 * 80.93719 * 20 19 18 34 34 H 1.08999 * 110.30510 * 263.04673 * 21 20 19 35 35 H 1.08997 * 110.31280 * 140.87233 * 21 20 19 36 36 H 1.09003 * 109.92069 * 333.51007 * 22 18 10 37 37 H 1.09007 * 109.91476 * 94.80468 * 22 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6320 -0.1144 11 1 5.1108 -2.6291 -0.1540 12 6 3.5646 -3.4239 1.0835 13 6 4.3077 -3.3903 2.2486 14 6 3.8783 -4.1220 3.3450 15 6 2.7126 -4.8640 3.2278 16 6 2.0257 -4.8540 2.0289 17 7 2.4603 -4.1405 1.0083 18 7 3.4887 -3.2447 -1.3387 19 6 3.8899 -2.4689 -2.5402 20 6 3.7219 -3.4896 -3.6936 21 6 4.1886 -4.8165 -3.0518 22 6 4.0386 -4.6036 -1.5340 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.7526 0.9282 25 1 3.8752 -0.6111 -0.8462 26 1 5.2113 -2.8014 2.3040 27 1 4.4382 -4.1144 4.2684 28 1 2.3488 -5.4461 4.0616 29 1 1.1196 -5.4330 1.9280 30 1 3.2295 -1.6136 -2.6841 31 1 4.9279 -2.1457 -2.4606 32 1 4.3577 -3.2253 -4.5384 33 1 2.6782 -3.5561 -4.0008 34 1 5.2303 -5.0133 -3.3051 35 1 3.5558 -5.6400 -3.3826 36 1 5.0120 -4.6834 -1.0498 37 1 3.3537 -5.3442 -1.1210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259879636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:11 Heat of formation + Delta-G solvation = 48.026151 kcal Electronic energy + Delta-G solvation = -18311.614035 eV Core-core repulsion = 15668.016737 eV Total energy + Delta-G solvation = -2643.597298 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83934 -38.10449 -34.15050 -32.08774 -31.76737 -30.02713 -28.92588 -27.98201 -24.94485 -22.95575 -22.27407 -21.16518 -20.20859 -19.26386 -16.86997 -16.24508 -15.81659 -15.37896 -15.10788 -14.56229 -13.87621 -13.70889 -13.49139 -12.95422 -12.75668 -12.45148 -12.25653 -11.87682 -11.83618 -11.58400 -11.12482 -10.92248 -10.81329 -10.61150 -10.27332 -10.18108 -9.97648 -9.63921 -9.29401 -9.00776 -8.54853 -8.37096 -8.32230 -7.49424 -5.83230 -3.76835 1.68733 1.87581 3.36250 3.44699 3.45774 4.41032 4.57984 4.60602 4.90174 5.13924 5.15748 5.25118 5.29989 5.38933 5.50261 5.54815 5.71406 5.74590 5.89123 5.91940 6.08017 6.11245 6.17808 6.20412 6.23778 6.38383 6.54719 6.58446 6.62533 6.63735 6.73405 7.01944 7.14523 7.30745 7.70991 7.79383 7.96710 8.75950 8.83384 9.44914 9.79243 11.30397 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.011228 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.789160 B = 2493.276872 C = 3729.331936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.063 3.937 3 Si 0.863 3.137 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.487 4.487 8 H 0.101 0.899 9 C -0.006 4.006 10 C 0.138 3.862 11 H 0.032 0.968 12 C 0.175 3.825 13 C -0.182 4.182 14 C -0.081 4.081 15 C -0.194 4.194 16 C 0.097 3.903 17 N -0.431 5.431 18 N -0.466 5.466 19 C 0.040 3.960 20 C -0.122 4.122 21 C -0.129 4.129 22 C 0.038 3.962 23 H 0.258 0.742 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.092 0.908 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.138 -9.362 0.473 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.691 3.309 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.525 4.525 8 H 0.119 0.881 9 C -0.044 4.044 10 C 0.028 3.972 11 H 0.050 0.950 12 C 0.036 3.964 13 C -0.202 4.202 14 C -0.107 4.107 15 C -0.214 4.214 16 C -0.060 4.060 17 N -0.139 5.139 18 N -0.190 5.190 19 C -0.088 4.088 20 C -0.160 4.160 21 C -0.167 4.167 22 C -0.090 4.090 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.943 -9.253 -0.238 12.871 hybrid contribution 1.737 1.166 0.981 2.311 sum 10.680 -8.087 0.743 13.417 Atomic orbital electron populations 1.69910 1.06017 1.26043 1.52561 1.24994 0.94607 0.98247 0.95801 0.87053 0.80398 0.85160 0.78246 1.20544 1.21683 1.19549 1.21235 0.88286 0.95416 1.47539 0.88082 1.19721 0.99438 0.88858 0.96375 1.20740 0.93567 0.95907 0.86951 0.95002 1.21044 0.89452 0.91914 0.93966 1.21829 1.02136 1.01726 0.94543 1.21342 0.95961 0.95414 0.97974 1.21989 0.97408 1.02553 0.99469 1.22813 0.98613 0.95667 0.88954 1.67664 1.11245 1.04558 1.30457 1.64650 1.54132 0.99910 1.00282 1.23193 0.98244 0.97664 0.89667 1.22459 1.01764 0.94585 0.97185 1.22381 1.00227 0.98385 0.95700 1.22855 0.97260 0.93948 0.94964 0.93225 0.96521 0.96276 0.85783 0.85815 0.85852 0.83553 0.88941 0.95166 0.91949 0.90678 0.92479 0.91594 0.95590 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.56 13.96 55.43 0.77 -27.79 16 2 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 3 Si 0.86 21.93 27.38 -169.99 -4.65 17.28 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.27 -6.59 6.67 56.52 0.38 -6.22 16 7 C -0.49 -13.85 8.72 -34.44 -0.30 -14.15 16 8 H 0.10 3.19 6.76 -52.49 -0.35 2.83 16 9 C -0.01 -0.15 3.43 -27.88 -0.10 -0.24 16 10 C 0.14 2.83 1.69 -68.86 -0.12 2.72 16 11 H 0.03 0.60 7.94 -51.93 -0.41 0.18 16 12 C 0.17 3.52 4.63 -82.59 -0.38 3.14 16 13 C -0.18 -3.14 9.77 -39.44 -0.39 -3.52 16 14 C -0.08 -1.21 10.18 -39.27 -0.40 -1.61 16 15 C -0.19 -2.91 10.11 -39.44 -0.40 -3.31 16 16 C 0.10 1.71 11.18 -17.55 -0.20 1.51 16 17 N -0.43 -9.03 7.99 -9.47 -0.08 -9.11 16 18 N -0.47 -9.35 4.19 -223.88 -0.94 -10.29 16 19 C 0.04 0.73 5.36 -1.90 -0.01 0.72 16 20 C -0.12 -1.83 7.06 -24.87 -0.18 -2.00 16 21 C -0.13 -1.81 6.93 -25.37 -0.18 -1.99 16 22 C 0.04 0.64 5.75 -2.76 -0.02 0.63 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.02 0.40 7.52 -51.93 -0.39 0.01 16 25 H 0.02 0.45 6.20 -51.93 -0.32 0.13 16 26 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 30 H 0.09 1.90 7.71 -51.92 -0.40 1.50 16 31 H 0.03 0.51 8.01 -51.93 -0.42 0.09 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.42 7.67 -51.93 -0.40 0.02 16 37 H 0.08 1.37 7.72 -51.93 -0.40 0.97 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -32.60 297.30 -8.80 -41.40 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.64 Total: 0.38 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.75 Total: -16.35 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.24 Total: -47.19 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.65 Total: 17.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.60 -8.80 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.423 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds