Wall clock time and date at job start Mon Mar 30 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48507 * 109.47302 * 270.00341 * 3 2 1 5 5 H 1.48499 * 109.47087 * 29.99990 * 3 2 1 6 6 H 1.48495 * 109.47088 * 150.00069 * 3 2 1 7 7 C 1.37874 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00138 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00002 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47018 * 184.52011 * 9 7 2 11 11 H 1.09003 * 109.47053 * 177.76269 * 10 9 7 12 12 C 1.50695 * 109.47355 * 297.76293 * 10 9 7 13 13 C 1.38231 * 119.61480 * 275.00403 * 12 10 9 14 14 C 1.38638 * 119.15976 * 179.97438 * 13 12 10 15 15 C 1.38676 * 118.41644 * 0.02562 * 14 13 12 16 16 C 1.38180 * 119.16653 * 0.27167 * 15 14 13 17 17 N 1.31852 * 119.62027 * 94.97628 * 12 10 9 18 18 N 1.46907 * 109.47490 * 57.76228 * 10 9 7 19 19 C 1.48538 * 110.99727 * 58.51160 * 18 10 9 20 20 C 1.54933 * 103.22611 * 159.72440 * 19 18 10 21 21 C 1.54602 * 102.92240 * 322.58507 * 20 19 18 22 22 C 1.47892 * 111.00032 * 175.90598 * 18 10 9 23 23 H 0.96999 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47402 * 64.52010 * 9 7 2 25 25 H 1.09005 * 109.47111 * 304.51593 * 9 7 2 26 26 H 1.07997 * 120.42102 * 359.97438 * 13 12 10 27 27 H 1.07989 * 120.78882 * 180.02562 * 14 13 12 28 28 H 1.08001 * 120.41102 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.61768 * 179.69991 * 16 15 14 30 30 H 1.09009 * 110.66484 * 278.15558 * 19 18 10 31 31 H 1.09000 * 110.66890 * 41.28304 * 19 18 10 32 32 H 1.08995 * 110.72819 * 204.22907 * 20 19 18 33 33 H 1.08998 * 110.72371 * 80.93719 * 20 19 18 34 34 H 1.08999 * 110.30510 * 263.04673 * 21 20 19 35 35 H 1.08997 * 110.31280 * 140.87233 * 21 20 19 36 36 H 1.09003 * 109.92069 * 333.51007 * 22 18 10 37 37 H 1.09007 * 109.91476 * 94.80468 * 22 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6320 -0.1144 11 1 5.1108 -2.6291 -0.1540 12 6 3.5646 -3.4239 1.0835 13 6 4.3077 -3.3903 2.2486 14 6 3.8783 -4.1220 3.3450 15 6 2.7126 -4.8640 3.2278 16 6 2.0257 -4.8540 2.0289 17 7 2.4603 -4.1405 1.0083 18 7 3.4887 -3.2447 -1.3387 19 6 3.8899 -2.4689 -2.5402 20 6 3.7219 -3.4896 -3.6936 21 6 4.1886 -4.8165 -3.0518 22 6 4.0386 -4.6036 -1.5340 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.7526 0.9282 25 1 3.8752 -0.6111 -0.8462 26 1 5.2113 -2.8014 2.3040 27 1 4.4382 -4.1144 4.2684 28 1 2.3488 -5.4461 4.0616 29 1 1.1196 -5.4330 1.9280 30 1 3.2295 -1.6136 -2.6841 31 1 4.9279 -2.1457 -2.4606 32 1 4.3577 -3.2253 -4.5384 33 1 2.6782 -3.5561 -4.0008 34 1 5.2303 -5.0133 -3.3051 35 1 3.5558 -5.6400 -3.3826 36 1 5.0120 -4.6834 -1.0498 37 1 3.3537 -5.3442 -1.1210 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:11 Heat of formation + Delta-G solvation = 26.650200 kcal Electronic energy + Delta-G solvation = -18312.540966 eV Core-core repulsion = 15668.016737 eV Total energy + Delta-G solvation = -2644.524229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20045 -39.46024 -35.79130 -34.07040 -33.10011 -31.39215 -30.57990 -29.40489 -26.64759 -24.27226 -23.92659 -22.60703 -21.45396 -20.84683 -18.87164 -17.57698 -17.30197 -16.71541 -16.39765 -16.30486 -15.57464 -15.25612 -14.88765 -14.44789 -14.25271 -14.04560 -13.75727 -13.54874 -13.22505 -12.95378 -12.78801 -12.59786 -12.14638 -11.98602 -11.85743 -11.76287 -11.61463 -11.34935 -11.17906 -10.63904 -10.55736 -9.92987 -9.67531 -8.93397 -8.09762 -6.07368 0.37208 0.62807 1.34986 1.36475 1.46308 2.43930 3.04796 3.19479 3.28145 3.56107 3.87772 3.89520 4.07338 4.14765 4.19888 4.32996 4.42002 4.46681 4.47228 4.62995 4.72153 4.82594 4.86943 4.95644 5.00201 5.06226 5.10254 5.19266 5.28067 5.29626 5.37261 5.41918 5.42293 5.75477 5.99023 6.32564 6.37112 6.61413 7.12397 7.46560 7.51644 9.07361 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.011228 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.789160 B = 2493.276872 C = 3729.331936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.004 4.004 3 Si 0.932 3.068 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.249 1.249 7 C -0.475 4.475 8 H 0.060 0.940 9 C -0.002 4.002 10 C 0.140 3.860 11 H 0.054 0.946 12 C 0.141 3.859 13 C -0.190 4.190 14 C -0.077 4.077 15 C -0.182 4.182 16 C 0.071 3.929 17 N -0.475 5.475 18 N -0.499 5.499 19 C 0.036 3.964 20 C -0.115 4.115 21 C -0.120 4.120 22 C 0.043 3.957 23 H 0.257 0.743 24 H 0.018 0.982 25 H 0.024 0.976 26 H 0.145 0.855 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.910 -9.778 1.236 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.198 4.198 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.173 1.173 7 C -0.513 4.513 8 H 0.078 0.922 9 C -0.040 4.040 10 C 0.030 3.970 11 H 0.072 0.928 12 C 0.003 3.997 13 C -0.210 4.210 14 C -0.103 4.103 15 C -0.201 4.201 16 C -0.087 4.087 17 N -0.184 5.184 18 N -0.223 5.223 19 C -0.091 4.091 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.085 4.085 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.162 0.838 27 H 0.183 0.817 28 H 0.179 0.821 29 H 0.175 0.825 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.745 -9.688 0.522 15.234 hybrid contribution 0.817 1.164 0.808 1.636 sum 12.562 -8.523 1.330 15.239 Atomic orbital electron populations 1.70094 1.08090 1.26911 1.55162 1.25869 0.95393 1.02488 0.96054 0.85929 0.79589 0.79960 0.78756 1.19626 1.21932 1.17312 1.21369 0.90763 0.93711 1.45468 0.92229 1.19621 0.96169 0.91909 0.96308 1.20630 0.94545 0.93900 0.87903 0.92838 1.21121 0.90337 0.93246 0.94961 1.22136 1.02558 1.02095 0.94200 1.21849 0.95861 0.93870 0.98738 1.22387 0.96733 1.01752 0.99266 1.23191 0.99683 0.96054 0.89750 1.67528 1.12337 1.05944 1.32584 1.64516 1.55666 1.01506 1.00649 1.23167 0.98142 0.97325 0.90510 1.22427 1.01627 0.94218 0.97036 1.22365 1.02122 0.97968 0.93303 1.22774 0.96874 0.91774 0.97030 0.93441 0.96361 0.95796 0.83752 0.81682 0.82058 0.82488 0.92532 0.93490 0.88910 0.92270 0.89684 0.90712 0.94715 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.98 13.96 21.45 0.30 -62.68 16 2 C 0.00 -0.25 5.47 84.65 0.46 0.22 16 3 Si 0.93 45.78 27.38 68.60 1.88 47.66 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.25 -11.27 6.67 99.48 0.66 -10.61 16 7 C -0.47 -27.83 8.72 25.60 0.22 -27.61 16 8 H 0.06 3.96 6.76 -2.91 -0.02 3.94 16 9 C 0.00 -0.10 3.43 29.85 0.10 0.00 16 10 C 0.14 5.70 1.69 44.17 0.07 5.77 16 11 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 12 C 0.14 5.67 4.63 42.55 0.20 5.87 16 13 C -0.19 -6.17 9.77 22.36 0.22 -5.95 16 14 C -0.08 -2.07 10.18 22.47 0.23 -1.85 16 15 C -0.18 -5.01 10.11 22.36 0.23 -4.79 16 16 C 0.07 2.47 11.18 84.67 0.95 3.42 16 17 N -0.48 -20.39 7.99 -183.89 -1.47 -21.86 16 18 N -0.50 -20.21 4.19 -862.21 -3.61 -23.82 16 19 C 0.04 1.31 5.36 86.65 0.46 1.77 16 20 C -0.12 -3.30 7.06 31.80 0.22 -3.08 16 21 C -0.12 -3.12 6.93 31.48 0.22 -2.90 16 22 C 0.04 1.44 5.75 86.45 0.50 1.94 16 23 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 24 H 0.02 0.86 7.52 -2.39 -0.02 0.84 16 25 H 0.02 1.11 6.20 -2.38 -0.01 1.09 16 26 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 27 H 0.17 3.01 8.06 -2.92 -0.02 2.99 16 28 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.16 4.82 8.06 -2.91 -0.02 4.80 16 30 H 0.06 2.40 7.71 -2.38 -0.02 2.38 16 31 H 0.05 1.51 8.01 -2.39 -0.02 1.49 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.03 1.07 7.67 -2.39 -0.02 1.05 16 37 H 0.06 2.10 7.72 -2.38 -0.02 2.08 16 Total: -1.00 -74.24 297.30 2.17 -72.07 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.99 Total: 15.81 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.08 Total: -27.18 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.78 Total: -108.35 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -74.24 2.17 -72.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.715 kcal (2) G-P(sol) polarization free energy of solvation -74.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds