Wall clock time and date at job start Mon Mar 30 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31029 * 1 3 3 Si 1.86798 * 120.00290 * 2 1 4 4 H 1.48493 * 109.47225 * 264.98572 * 3 2 1 5 5 H 1.48503 * 109.46721 * 24.99007 * 3 2 1 6 6 H 1.48504 * 109.47158 * 144.98464 * 3 2 1 7 7 C 1.39703 * 119.99556 * 180.28159 * 2 1 3 8 8 H 1.07993 * 120.00048 * 24.99608 * 7 2 1 9 9 C 1.41599 * 119.99824 * 205.00403 * 7 2 1 10 10 C 1.41883 * 126.55536 * 39.53793 * 9 7 2 11 11 N 1.30317 * 108.04378 * 179.88114 * 10 9 7 12 12 N 1.39877 * 109.23651 * 0.39000 * 11 10 9 13 13 C 1.46498 * 125.68143 * 179.73124 * 12 11 10 14 14 C 1.54263 * 110.03275 * 57.93084 * 13 12 11 15 15 C 1.54974 * 104.15705 * 217.13786 * 14 13 12 16 16 C 1.54893 * 102.77560 * 37.88667 * 15 14 13 17 17 C 1.53875 * 110.02838 * 300.70938 * 13 12 11 18 18 C 1.34503 * 108.64165 * 359.74932 * 12 11 10 19 19 C 1.50706 * 126.40622 * 180.02562 * 18 12 11 20 20 C 1.53004 * 117.49758 * 195.88853 * 19 18 12 21 21 C 1.53003 * 117.50014 * 127.26359 * 19 18 12 22 22 H 0.96996 * 119.99729 * 359.71965 * 1 2 3 23 23 H 1.08005 * 125.98175 * 0.02562 * 10 9 7 24 24 H 1.09000 * 110.01312 * 179.32553 * 13 12 11 25 25 H 1.09000 * 110.48897 * 335.78213 * 14 13 12 26 26 H 1.08994 * 110.48311 * 98.42913 * 14 13 12 27 27 H 1.08997 * 110.71853 * 279.57400 * 15 14 13 28 28 H 1.08997 * 110.91649 * 156.29613 * 15 14 13 29 29 H 1.08999 * 110.48427 * 203.40097 * 16 15 14 30 30 H 1.09005 * 110.59489 * 80.81828 * 16 15 14 31 31 H 1.08994 * 110.03594 * 238.56754 * 17 13 12 32 32 H 1.09003 * 110.03753 * 359.95498 * 17 13 12 33 33 H 1.09001 * 115.54568 * 341.59098 * 19 18 12 34 34 H 1.08997 * 117.50013 * 359.97438 * 20 19 18 35 35 H 1.08996 * 117.49628 * 145.02315 * 20 19 18 36 36 H 1.08995 * 117.49608 * 214.98118 * 21 19 18 37 37 H 1.09000 * 117.49642 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.5979 1.9852 -1.3946 5 1 1.3928 2.6808 0.5915 6 1 3.4849 1.4730 0.8034 7 6 2.0087 -1.2099 -0.0059 8 1 1.5445 -2.0994 -0.4055 9 6 3.3252 -1.2700 0.5121 10 6 3.8096 -0.6049 1.6680 11 7 5.0672 -0.9138 1.8142 12 7 5.4551 -1.7690 0.7775 13 6 6.7946 -2.3319 0.5902 14 6 7.2079 -3.1390 1.8382 15 6 8.7230 -2.8513 1.9910 16 6 8.8295 -1.3572 1.5967 17 6 7.8253 -1.1997 0.4363 18 6 4.3937 -1.9882 -0.0190 19 6 4.3657 -2.8503 -1.2548 20 6 3.1853 -2.6745 -2.2123 21 6 3.2828 -3.9279 -1.3401 22 1 -0.4849 0.8400 0.0041 23 1 3.2359 0.0421 2.3151 24 1 6.8100 -2.9730 -0.2912 25 1 6.6632 -2.7904 2.7156 26 1 7.0351 -4.2033 1.6786 27 1 9.3042 -3.4729 1.3099 28 1 9.0460 -3.0031 3.0209 29 1 9.8397 -1.1222 1.2616 30 1 8.5481 -0.7187 2.4342 31 1 8.3415 -1.2919 -0.5192 32 1 7.3287 -0.2314 0.5002 33 1 5.3383 -3.0785 -1.6909 34 1 2.4288 -1.9356 -1.9481 35 1 3.3811 -2.7869 -3.2786 36 1 3.5429 -4.8648 -1.8327 37 1 2.5904 -4.0129 -0.5026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:22 Heat of formation + Delta-G solvation = 73.678875 kcal Electronic energy + Delta-G solvation = -18217.711762 eV Core-core repulsion = 15575.226850 eV Total energy + Delta-G solvation = -2642.484913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.74565 -38.73882 -37.62064 -35.10857 -32.94289 -30.93426 -29.67548 -28.80452 -26.34263 -23.51915 -23.09843 -22.76994 -21.56690 -20.83801 -19.77050 -18.85912 -17.62861 -16.67994 -16.25015 -16.16380 -15.28583 -15.14186 -14.84840 -14.61718 -14.28353 -14.18926 -13.56400 -13.15196 -12.85550 -12.66036 -12.39111 -12.17195 -12.08257 -12.00788 -11.95333 -11.89808 -11.71745 -11.47898 -11.40050 -11.21996 -10.84612 -10.78339 -9.55554 -8.84496 -8.49892 -5.98944 1.14592 1.31320 1.43696 1.53515 1.97984 2.14328 2.35732 3.14379 3.38199 3.55021 3.66642 3.84873 3.97873 4.18323 4.22613 4.30675 4.37729 4.44693 4.49320 4.53733 4.65796 4.76621 4.89321 4.92117 5.00733 5.03934 5.12982 5.17843 5.25229 5.29685 5.39904 5.45622 5.56614 5.62912 5.76059 5.97800 6.53075 6.67501 7.00138 7.16005 7.35067 8.60643 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.008324 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.751252 B = 3362.984720 C = 4021.888691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.052 3.948 3 Si 0.922 3.078 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.461 4.461 8 H 0.062 0.938 9 C -0.075 4.075 10 C -0.014 4.014 11 N -0.325 5.325 12 N -0.360 5.360 13 C 0.151 3.849 14 C -0.130 4.130 15 C -0.109 4.109 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.000 4.000 19 C -0.077 4.077 20 C -0.183 4.183 21 C -0.161 4.161 22 H 0.276 0.724 23 H 0.157 0.843 24 H 0.114 0.886 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.308 -5.577 -1.598 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.155 4.155 3 Si 0.747 3.253 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.167 1.167 7 C -0.495 4.495 8 H 0.080 0.920 9 C -0.085 4.085 10 C -0.198 4.198 11 N -0.149 5.149 12 N -0.146 5.146 13 C 0.049 3.951 14 C -0.168 4.168 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.125 4.125 19 C -0.097 4.097 20 C -0.220 4.220 21 C -0.199 4.199 22 H 0.086 0.914 23 H 0.174 0.826 24 H 0.132 0.868 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.230 -5.342 -0.894 18.062 hybrid contribution -1.364 1.010 -0.272 1.719 sum 15.867 -4.332 -1.166 16.489 Atomic orbital electron populations 1.69911 1.08646 1.29349 1.43998 1.26149 0.94565 1.02308 0.92522 0.86055 0.80920 0.79252 0.79099 1.20447 1.20750 1.16705 1.18271 0.95973 0.95726 1.39559 0.92010 1.18029 0.94075 1.01321 0.95114 1.23977 0.93243 1.03696 0.98885 1.76430 1.14885 1.12477 1.11091 1.48044 1.08808 1.37599 1.20130 1.22189 0.77740 0.94916 1.00218 1.22727 0.97935 0.99716 0.96451 1.22449 0.93686 0.95881 1.02669 1.22292 0.99032 0.97092 0.96948 1.22499 0.96276 0.97167 1.00869 1.20965 0.87478 1.07609 0.96483 1.20091 0.95333 1.00222 0.94010 1.23371 1.01229 1.01056 0.96349 1.22869 1.01101 0.93553 1.02343 0.91409 0.82553 0.86841 0.93080 0.90209 0.88882 0.90424 0.89214 0.93166 0.88889 0.93918 0.85626 0.88241 0.87092 0.86038 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.47 13.94 21.79 0.30 -51.16 16 2 C 0.05 2.90 5.43 85.17 0.46 3.36 16 3 Si 0.92 44.24 27.14 68.60 1.86 46.10 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.24 -11.70 5.18 99.48 0.52 -11.18 16 7 C -0.46 -25.63 7.12 23.45 0.17 -25.46 16 8 H 0.06 3.67 5.89 -2.91 -0.02 3.65 16 9 C -0.07 -3.83 4.80 -21.30 -0.10 -3.93 16 10 C -0.01 -0.70 9.05 85.82 0.78 0.07 16 11 N -0.33 -15.04 11.88 -55.93 -0.66 -15.70 16 12 N -0.36 -14.64 3.18 -308.03 -0.98 -15.62 16 13 C 0.15 4.44 3.68 45.71 0.17 4.61 16 14 C -0.13 -3.37 6.52 31.70 0.21 -3.16 16 15 C -0.11 -2.03 6.91 31.92 0.22 -1.81 16 16 C -0.12 -2.46 6.83 31.67 0.22 -2.24 16 17 C -0.13 -3.39 6.54 31.32 0.20 -3.19 16 18 C 0.00 -0.01 6.71 42.40 0.28 0.28 16 19 C -0.08 -2.77 5.87 -11.54 -0.07 -2.83 16 20 C -0.18 -6.78 9.59 30.60 0.29 -6.49 16 21 C -0.16 -5.55 9.79 30.60 0.30 -5.25 16 22 H 0.28 14.90 8.30 -92.71 -0.77 14.13 16 23 H 0.16 7.61 7.28 -2.91 -0.02 7.59 16 24 H 0.11 2.83 6.65 -2.39 -0.02 2.82 16 25 H 0.05 1.66 7.70 -2.39 -0.02 1.64 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 33 H 0.13 3.59 7.06 -2.39 -0.02 3.58 16 34 H 0.10 4.64 4.79 -2.39 -0.01 4.63 16 35 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.07 2.70 7.53 -2.39 -0.02 2.69 16 Total: -1.00 -65.53 292.53 4.52 -61.02 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.87 Total: 21.42 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 3.13 Total: -46.05 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -1.34 Total: -82.49 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.86 Total: 46.10 kcal Total: -65.53 4.52 -61.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.694 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds