Wall clock time and date at job start Mon Mar 30 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34424 * 126.10126 * 2 1 4 4 C 1.30788 * 109.32056 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.71897 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.50321 * 60.02483 * 5 4 3 7 7 C 1.52997 * 117.50247 * 351.39583 * 5 4 3 8 8 N 1.34409 * 108.55469 * 0.29408 * 4 3 2 9 9 C 1.33859 * 126.09935 * 180.02562 * 2 1 3 10 10 C 1.50713 * 128.68212 * 359.89746 * 9 2 1 11 11 C 1.53499 * 108.05517 * 195.76055 * 10 9 2 12 12 C 1.53114 * 109.30871 * 311.29205 * 11 10 9 13 13 C 1.46464 * 128.44613 * 180.16230 * 8 4 3 14 14 H 1.09001 * 109.92224 * 77.04959 * 13 8 4 15 15 C 1.50698 * 109.46740 * 316.61730 * 13 8 4 16 16 H 1.08000 * 119.99986 * 0.94524 * 15 13 8 17 17 C 1.37879 * 120.00407 * 180.94411 * 15 13 8 18 18 N 1.31510 * 120.00066 * 179.97438 * 17 15 13 19 19 Si 1.86801 * 119.99705 * 0.02562 * 17 15 13 20 20 H 1.48495 * 109.47342 * 89.99617 * 19 17 15 21 21 H 1.48498 * 109.46890 * 209.99841 * 19 17 15 22 22 H 1.48506 * 109.46950 * 329.99564 * 19 17 15 23 23 H 1.09004 * 109.46906 * 90.02512 * 1 2 3 24 24 H 1.09002 * 109.46713 * 210.02403 * 1 2 3 25 25 H 1.08993 * 109.46801 * 330.02399 * 1 2 3 26 26 H 1.09002 * 115.55636 * 205.70882 * 5 4 3 27 27 H 1.08990 * 117.49990 * 145.01584 * 6 5 4 28 28 H 1.09004 * 117.49237 * 359.97438 * 6 5 4 29 29 H 1.08999 * 117.49685 * 0.02562 * 7 5 4 30 30 H 1.08999 * 117.52022 * 214.97066 * 7 5 4 31 31 H 1.09000 * 109.74111 * 315.39571 * 10 9 2 32 32 H 1.08994 * 109.74701 * 76.07324 * 10 9 2 33 33 H 1.08995 * 109.49786 * 71.24710 * 11 10 9 34 34 H 1.09004 * 109.49638 * 191.31035 * 11 10 9 35 35 H 1.09004 * 109.43073 * 189.98781 * 12 11 10 36 36 H 1.09002 * 109.43082 * 309.84374 * 12 11 10 37 37 H 0.96996 * 119.99975 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2991 1.0861 0.0000 4 6 3.5513 0.7085 -0.0006 5 6 4.7469 1.6259 -0.0002 6 6 4.8949 2.5931 1.1760 7 6 4.4905 3.1207 -0.2021 8 7 3.5929 -0.6349 -0.0075 9 6 2.2957 -1.0816 -0.0005 10 6 1.9001 -2.5359 0.0010 11 6 3.1311 -3.3634 0.3961 12 6 4.3327 -2.9141 -0.4398 13 6 4.7676 -1.5097 -0.0074 14 1 5.1987 -1.5525 0.9928 15 6 5.7910 -0.9763 -0.9765 16 1 5.5930 -0.0673 -1.5251 17 6 6.9803 -1.6486 -1.1629 18 7 7.8731 -1.1833 -2.0090 19 14 7.3226 -3.2212 -0.2146 20 1 6.8291 -4.3858 -0.9925 21 1 8.7846 -3.3573 0.0068 22 1 6.6261 -3.1704 1.0961 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 5.6592 1.2095 -0.4273 27 1 5.9045 2.8131 1.5227 28 1 4.1272 2.5662 1.9494 29 1 3.4570 3.4406 -0.3348 30 1 5.2340 3.6881 -0.7618 31 1 1.0997 -2.6989 0.7226 32 1 1.5638 -2.8270 -0.9941 33 1 3.3467 -3.2124 1.4538 34 1 2.9338 -4.4195 0.2122 35 1 5.1578 -3.6110 -0.2924 36 1 4.0558 -2.8989 -1.4939 37 1 8.7099 -1.6561 -2.1398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259946025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:58 Heat of formation + Delta-G solvation = 74.770579 kcal Electronic energy + Delta-G solvation = -18526.360643 eV Core-core repulsion = 15883.923070 eV Total energy + Delta-G solvation = -2642.437573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64725 -36.66985 -36.06456 -33.37977 -32.34113 -29.79950 -29.62041 -25.87335 -25.63712 -22.50602 -22.15972 -21.80042 -20.59236 -18.86697 -18.24270 -17.16325 -16.01651 -14.89448 -14.75959 -14.35285 -14.06042 -13.69994 -13.59149 -13.25704 -12.74955 -12.55321 -12.40587 -12.14880 -11.66468 -11.50118 -11.23960 -11.12599 -10.97678 -10.70589 -10.47739 -10.38259 -10.04441 -9.87137 -9.73446 -9.38800 -9.12121 -8.83393 -8.42842 -7.25278 -6.38683 -4.43748 2.82000 3.04783 3.13171 3.17791 3.65573 3.77465 4.10204 4.61902 4.87415 5.01441 5.15834 5.24809 5.35009 5.46337 5.57035 5.67331 5.70158 5.80557 5.95547 6.02926 6.04288 6.11839 6.13785 6.15482 6.23606 6.26745 6.34800 6.41763 6.48256 6.61205 6.69862 6.82892 7.00577 7.14055 7.46580 7.56414 8.00950 8.25355 8.62363 8.93494 9.17151 10.72081 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.011103 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.147751 B = 2521.142539 C = 3700.014332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.015 4.015 3 N -0.510 5.510 4 C 0.260 3.740 5 C -0.079 4.079 6 C -0.170 4.170 7 C -0.161 4.161 8 N -0.412 5.412 9 C -0.038 4.038 10 C -0.036 4.036 11 C -0.127 4.127 12 C -0.137 4.137 13 C 0.233 3.767 14 H 0.049 0.951 15 C -0.543 4.543 16 H 0.095 0.905 17 C 0.085 3.915 18 N -0.880 5.880 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.265 1.265 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.154 0.846 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 -1.155 5.065 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.145 4.145 3 N -0.231 5.231 4 C -0.002 4.002 5 C -0.099 4.099 6 C -0.208 4.208 7 C -0.199 4.199 8 N -0.090 5.090 9 C -0.154 4.154 10 C -0.074 4.074 11 C -0.165 4.165 12 C -0.175 4.175 13 C 0.132 3.868 14 H 0.066 0.934 15 C -0.580 4.580 16 H 0.113 0.887 17 C -0.120 4.120 18 N -0.515 5.515 19 Si 0.707 3.293 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.171 0.829 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.999 -0.480 4.960 9.424 hybrid contribution 0.710 -1.844 0.335 2.004 sum -7.289 -2.324 5.295 9.304 Atomic orbital electron populations 1.19862 0.88695 1.01494 1.01229 1.20039 0.95645 0.88494 1.10337 1.70172 0.99622 1.30038 1.23239 1.21705 0.92959 0.81497 1.04038 1.20805 0.96267 0.88894 1.03913 1.22908 1.02044 1.04011 0.91830 1.22867 1.02707 0.95279 0.99001 1.45321 1.06609 1.06652 1.50456 1.20723 0.84527 0.96302 1.13871 1.20064 0.97421 0.88285 1.01646 1.21725 0.95468 0.99102 1.00234 1.22321 0.96815 0.97421 1.00914 1.19699 0.82346 0.86089 0.98707 0.93383 1.21112 0.99721 1.12613 1.24603 0.88697 1.24809 0.95492 0.97246 0.94481 1.69839 1.08143 1.39545 1.34015 0.86988 0.77302 0.83950 0.81032 1.19945 1.21542 1.18981 0.92287 0.92215 0.92018 0.82859 0.88765 0.89292 0.88163 0.88874 0.90659 0.90811 0.92150 0.91725 0.91784 0.90729 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.82 10.27 36.01 0.37 -0.45 16 2 C -0.02 -0.30 7.09 -82.99 -0.59 -0.89 16 3 N -0.51 -11.17 10.83 -7.27 -0.08 -11.25 16 4 C 0.26 5.84 7.12 -155.75 -1.11 4.74 16 5 C -0.08 -1.64 5.46 -91.77 -0.50 -2.14 16 6 C -0.17 -2.91 10.24 -26.73 -0.27 -3.19 16 7 C -0.16 -2.79 10.14 -26.73 -0.27 -3.07 16 8 N -0.41 -9.24 2.97 -103.64 -0.31 -9.55 16 9 C -0.04 -0.75 6.56 -81.72 -0.54 -1.29 16 10 C -0.04 -0.57 6.01 -27.62 -0.17 -0.74 16 11 C -0.13 -2.11 5.96 -26.41 -0.16 -2.27 16 12 C -0.14 -2.79 4.54 -26.54 -0.12 -2.91 16 13 C 0.23 5.35 2.53 -68.97 -0.17 5.18 16 14 H 0.05 1.13 7.23 -51.93 -0.38 0.76 16 15 C -0.54 -14.11 7.64 -34.44 -0.26 -14.37 16 16 H 0.10 2.70 5.86 -52.49 -0.31 2.40 16 17 C 0.09 2.24 5.45 -17.82 -0.10 2.15 16 18 N -0.88 -24.74 13.96 55.43 0.77 -23.96 16 19 Si 0.88 19.86 24.29 -169.99 -4.13 15.73 16 20 H -0.27 -6.01 6.96 56.52 0.39 -5.61 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.26 -5.72 6.52 56.52 0.37 -5.35 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.15 3.53 5.16 -51.93 -0.27 3.26 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.10 1.78 7.89 -51.93 -0.41 1.37 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.32 3.61 -51.93 -0.19 1.13 16 36 H 0.07 1.58 8.09 -51.93 -0.42 1.16 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -28.91 288.58 -8.62 -37.53 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.34 Total: 6.41 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.89 Total: -19.26 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.39 Total: -44.77 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.13 Total: 15.73 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.91 -8.62 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.304 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds