Wall clock time and date at job start Mon Mar 30 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34424 * 126.10126 * 2 1 4 4 C 1.30788 * 109.32056 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.71897 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.50321 * 60.02483 * 5 4 3 7 7 C 1.52997 * 117.50247 * 351.39583 * 5 4 3 8 8 N 1.34409 * 108.55469 * 0.29408 * 4 3 2 9 9 C 1.33859 * 126.09935 * 180.02562 * 2 1 3 10 10 C 1.50713 * 128.68212 * 359.89746 * 9 2 1 11 11 C 1.53499 * 108.05517 * 195.76055 * 10 9 2 12 12 C 1.53114 * 109.30871 * 311.29205 * 11 10 9 13 13 C 1.46464 * 128.44613 * 180.16230 * 8 4 3 14 14 H 1.09001 * 109.92224 * 77.04959 * 13 8 4 15 15 C 1.50698 * 109.46740 * 316.61730 * 13 8 4 16 16 H 1.08000 * 119.99986 * 0.94524 * 15 13 8 17 17 C 1.37879 * 120.00407 * 180.94411 * 15 13 8 18 18 N 1.31510 * 120.00066 * 179.97438 * 17 15 13 19 19 Si 1.86801 * 119.99705 * 0.02562 * 17 15 13 20 20 H 1.48495 * 109.47342 * 89.99617 * 19 17 15 21 21 H 1.48498 * 109.46890 * 209.99841 * 19 17 15 22 22 H 1.48506 * 109.46950 * 329.99564 * 19 17 15 23 23 H 1.09004 * 109.46906 * 90.02512 * 1 2 3 24 24 H 1.09002 * 109.46713 * 210.02403 * 1 2 3 25 25 H 1.08993 * 109.46801 * 330.02399 * 1 2 3 26 26 H 1.09002 * 115.55636 * 205.70882 * 5 4 3 27 27 H 1.08990 * 117.49990 * 145.01584 * 6 5 4 28 28 H 1.09004 * 117.49237 * 359.97438 * 6 5 4 29 29 H 1.08999 * 117.49685 * 0.02562 * 7 5 4 30 30 H 1.08999 * 117.52022 * 214.97066 * 7 5 4 31 31 H 1.09000 * 109.74111 * 315.39571 * 10 9 2 32 32 H 1.08994 * 109.74701 * 76.07324 * 10 9 2 33 33 H 1.08995 * 109.49786 * 71.24710 * 11 10 9 34 34 H 1.09004 * 109.49638 * 191.31035 * 11 10 9 35 35 H 1.09004 * 109.43073 * 189.98781 * 12 11 10 36 36 H 1.09002 * 109.43082 * 309.84374 * 12 11 10 37 37 H 0.96996 * 119.99975 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2991 1.0861 0.0000 4 6 3.5513 0.7085 -0.0006 5 6 4.7469 1.6259 -0.0002 6 6 4.8949 2.5931 1.1760 7 6 4.4905 3.1207 -0.2021 8 7 3.5929 -0.6349 -0.0075 9 6 2.2957 -1.0816 -0.0005 10 6 1.9001 -2.5359 0.0010 11 6 3.1311 -3.3634 0.3961 12 6 4.3327 -2.9141 -0.4398 13 6 4.7676 -1.5097 -0.0074 14 1 5.1987 -1.5525 0.9928 15 6 5.7910 -0.9763 -0.9765 16 1 5.5930 -0.0673 -1.5251 17 6 6.9803 -1.6486 -1.1629 18 7 7.8731 -1.1833 -2.0090 19 14 7.3226 -3.2212 -0.2146 20 1 6.8291 -4.3858 -0.9925 21 1 8.7846 -3.3573 0.0068 22 1 6.6261 -3.1704 1.0961 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 5.6592 1.2095 -0.4273 27 1 5.9045 2.8131 1.5227 28 1 4.1272 2.5662 1.9494 29 1 3.4570 3.4406 -0.3348 30 1 5.2340 3.6881 -0.7618 31 1 1.0997 -2.6989 0.7226 32 1 1.5638 -2.8270 -0.9941 33 1 3.3467 -3.2124 1.4538 34 1 2.9338 -4.4195 0.2122 35 1 5.1578 -3.6110 -0.2924 36 1 4.0558 -2.8989 -1.4939 37 1 8.7099 -1.6561 -2.1398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259946025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:58 Heat of formation + Delta-G solvation = 58.438542 kcal Electronic energy + Delta-G solvation = -18527.068853 eV Core-core repulsion = 15883.923070 eV Total energy + Delta-G solvation = -2643.145783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.21930 -38.18558 -37.64253 -35.02269 -34.08555 -31.44165 -31.05907 -27.46887 -27.20340 -24.15254 -23.75023 -23.23223 -22.10273 -20.44589 -19.82879 -19.06980 -17.65026 -16.59485 -16.32726 -15.97699 -15.54115 -15.22420 -15.09739 -14.70200 -14.46792 -14.06216 -13.64585 -13.57070 -13.16835 -12.93184 -12.88420 -12.70115 -12.38531 -12.31887 -12.16261 -11.83922 -11.61563 -11.37618 -11.33852 -11.15275 -10.84450 -10.68003 -10.12354 -8.75829 -8.42280 -6.51744 1.22798 1.26924 1.30010 1.39037 2.11733 2.17582 2.20414 2.88732 3.10689 3.53002 3.73371 3.85752 3.95032 4.01468 4.06986 4.18171 4.27276 4.41398 4.54094 4.62166 4.68019 4.73977 4.81714 4.89309 4.92277 4.94964 4.96268 4.99608 5.15822 5.16855 5.21502 5.29373 5.39253 5.41986 5.82592 6.02333 6.14146 6.46816 6.58696 7.12777 7.33852 8.72116 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.011103 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.147751 B = 2521.142539 C = 3700.014332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.032 4.032 3 N -0.526 5.526 4 C 0.234 3.766 5 C -0.113 4.113 6 C -0.147 4.147 7 C -0.145 4.145 8 N -0.429 5.429 9 C -0.050 4.050 10 C -0.033 4.033 11 C -0.122 4.122 12 C -0.135 4.135 13 C 0.236 3.764 14 H 0.040 0.960 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.033 3.967 18 N -0.929 5.929 19 Si 0.938 3.062 20 H -0.257 1.257 21 H -0.291 1.291 22 H -0.247 1.247 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -2.929 6.574 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.161 4.161 3 N -0.248 5.248 4 C -0.028 4.028 5 C -0.133 4.133 6 C -0.185 4.185 7 C -0.182 4.182 8 N -0.108 5.108 9 C -0.165 4.165 10 C -0.071 4.071 11 C -0.159 4.159 12 C -0.173 4.173 13 C 0.133 3.867 14 H 0.058 0.942 15 C -0.579 4.579 16 H 0.072 0.928 17 C -0.168 4.168 18 N -0.566 5.566 19 Si 0.764 3.236 20 H -0.182 1.182 21 H -0.218 1.218 22 H -0.171 1.171 23 H 0.087 0.913 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.013 -2.249 6.475 12.135 hybrid contribution 1.288 -1.158 -0.191 1.743 sum -8.725 -3.407 6.285 11.279 Atomic orbital electron populations 1.19986 0.85259 1.03158 1.02373 1.20894 0.97821 0.87838 1.09537 1.70170 0.99671 1.31241 1.23676 1.22045 0.93635 0.82057 1.05057 1.20638 0.95053 0.90395 1.07203 1.22963 1.03138 1.01148 0.91232 1.22907 1.03060 0.92894 0.99363 1.45421 1.07377 1.06714 1.51324 1.21541 0.83396 0.98654 1.12914 1.20270 0.98108 0.85213 1.03541 1.21726 0.93599 1.01218 0.99373 1.22224 0.98845 0.95402 1.00847 1.19523 0.82235 0.87808 0.97095 0.94201 1.21210 1.01004 1.11273 1.24446 0.92786 1.25610 0.95081 1.00698 0.95367 1.69981 1.08883 1.41495 1.36271 0.86016 0.77058 0.80040 0.80529 1.18230 1.21794 1.17081 0.91287 0.89210 0.91716 0.86255 0.86871 0.89027 0.88395 0.87200 0.87042 0.89487 0.91898 0.88011 0.91743 0.92181 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.34 10.27 71.24 0.73 -0.61 16 2 C -0.03 -1.21 7.09 41.17 0.29 -0.92 16 3 N -0.53 -23.07 10.83 -176.91 -1.92 -24.99 16 4 C 0.23 10.75 7.12 138.24 0.98 11.74 16 5 C -0.11 -4.88 5.46 -11.54 -0.06 -4.95 16 6 C -0.15 -5.04 10.24 30.60 0.31 -4.72 16 7 C -0.14 -5.09 10.14 30.60 0.31 -4.78 16 8 N -0.43 -19.36 2.97 -481.81 -1.43 -20.79 16 9 C -0.05 -1.90 6.56 40.73 0.27 -1.63 16 10 C -0.03 -0.94 6.01 30.02 0.18 -0.76 16 11 C -0.12 -3.55 5.96 30.80 0.18 -3.37 16 12 C -0.14 -5.29 4.54 30.72 0.14 -5.15 16 13 C 0.24 10.88 2.53 44.34 0.11 11.00 16 14 H 0.04 1.89 7.23 -2.39 -0.02 1.87 16 15 C -0.54 -29.40 7.64 25.60 0.20 -29.20 16 16 H 0.05 3.32 5.86 -2.91 -0.02 3.30 16 17 C 0.03 1.80 5.45 84.66 0.46 2.26 16 18 N -0.93 -54.45 13.96 21.45 0.30 -54.15 16 19 Si 0.94 40.81 24.29 68.60 1.67 42.47 16 20 H -0.26 -10.47 6.96 99.48 0.69 -9.78 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.25 -9.93 6.52 99.48 0.65 -9.28 16 23 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.09 1.85 7.79 -2.39 -0.02 1.83 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.12 5.95 5.16 -2.39 -0.01 5.94 16 27 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 29 H 0.10 3.49 7.89 -2.39 -0.02 3.47 16 30 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.11 2.36 7.91 -2.39 -0.02 2.34 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 34 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.06 2.49 3.61 -2.38 -0.01 2.48 16 36 H 0.06 2.49 8.09 -2.39 -0.02 2.47 16 37 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -65.94 288.58 3.72 -62.23 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.99 Total: 26.32 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 4.11 Total: -31.09 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.05 Total: -99.93 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.67 Total: 42.47 kcal Total: -65.94 3.72 -62.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.664 kcal (2) G-P(sol) polarization free energy of solvation -65.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds