Wall clock time and date at job start Mon Mar 30 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00103 * 2 1 4 4 H 1.08995 * 109.47486 * 30.00246 * 3 2 1 5 5 C 1.53001 * 109.47122 * 269.99878 * 3 2 1 6 6 C 1.50705 * 109.47063 * 150.00312 * 3 2 1 7 7 C 1.38233 * 119.99701 * 219.99832 * 6 3 2 8 8 C 1.38238 * 119.99873 * 179.97438 * 7 6 3 9 9 C 1.38238 * 119.99880 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99843 * 180.02562 * 9 8 7 11 11 C 1.50704 * 115.54862 * 294.17024 * 10 9 8 12 12 H 1.07995 * 119.99891 * 99.41269 * 11 10 9 13 13 C 1.37882 * 120.00078 * 279.41458 * 11 10 9 14 14 N 1.31519 * 119.99752 * 5.37256 * 13 11 10 15 15 Si 1.86800 * 120.00049 * 185.37211 * 13 11 10 16 16 H 1.48492 * 109.46915 * 269.99784 * 15 13 11 17 17 H 1.48500 * 109.46938 * 29.99852 * 15 13 11 18 18 H 1.48494 * 109.46888 * 150.00004 * 15 13 11 19 19 C 1.52996 * 117.52146 * 79.87594 * 10 9 8 20 20 C 1.53000 * 117.49974 * 148.50741 * 10 9 8 21 21 C 1.38231 * 119.99806 * 0.27425 * 9 8 7 22 22 C 1.38236 * 120.00453 * 359.51906 * 21 9 8 23 23 H 1.08999 * 109.47228 * 59.99589 * 1 2 3 24 24 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46832 * 299.99769 * 1 2 3 26 26 H 1.08995 * 109.47241 * 300.00518 * 5 3 2 27 27 H 1.09005 * 109.46827 * 60.00091 * 5 3 2 28 28 H 1.09003 * 109.47158 * 179.97438 * 5 3 2 29 29 H 1.07999 * 120.00421 * 359.97438 * 7 6 3 30 30 H 1.08002 * 120.00014 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99894 * 174.99515 * 14 13 11 32 32 H 1.09001 * 117.49621 * 214.97342 * 19 10 9 33 33 H 1.08992 * 117.49825 * 359.97438 * 19 10 9 34 34 H 1.09001 * 117.49877 * 359.96352 * 20 10 9 35 35 H 1.09000 * 117.50387 * 144.99755 * 20 10 9 36 36 H 1.08004 * 119.99892 * 179.72254 * 21 9 8 37 37 H 1.07997 * 120.00728 * 180.26590 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 6 3.7063 2.2988 1.5497 8 6 4.9246 2.2604 2.2018 9 6 5.7751 1.1867 2.0148 10 6 7.1030 1.1446 2.7260 11 6 8.0939 2.2033 2.3158 12 1 8.2190 3.0892 2.9206 13 6 8.8408 2.0409 1.1682 14 7 8.6148 1.0156 0.3761 15 14 10.1738 3.2770 0.7386 16 1 9.5928 4.3632 -0.0906 17 1 10.7352 3.8534 1.9868 18 1 11.2530 2.5970 -0.0217 19 6 7.1066 0.7032 4.1910 20 6 7.6557 -0.2296 3.1096 21 6 5.4096 0.1542 1.1714 22 6 4.1895 0.1905 0.5227 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.8828 1.0774 -1.9563 27 1 1.2568 1.8014 -1.9563 28 1 2.6606 2.7673 -1.4425 29 1 3.0417 3.1374 1.6961 30 1 5.2117 3.0688 2.8579 31 1 9.0890 0.9400 -0.4666 32 1 7.8257 1.1787 4.8580 33 1 6.1484 0.4436 4.6407 34 1 7.0585 -1.1031 2.8480 35 1 8.7360 -0.3679 3.0653 36 1 6.0760 -0.6825 1.0219 37 1 3.9021 -0.6181 -0.1329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259984523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:43 Heat of formation + Delta-G solvation = -19.042738 kcal Electronic energy + Delta-G solvation = -17636.975630 eV Core-core repulsion = 14958.177255 eV Total energy + Delta-G solvation = -2678.798375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58401 -39.02915 -37.40896 -34.02564 -33.22304 -31.60674 -29.85553 -27.70068 -27.43837 -24.71536 -23.74297 -22.44347 -22.13881 -20.79171 -18.43751 -17.58723 -17.28260 -16.60379 -16.11088 -16.04138 -15.46072 -15.22334 -15.04289 -14.37576 -14.09801 -13.96860 -13.60430 -13.40904 -13.15286 -12.89775 -12.86775 -12.75833 -12.36833 -12.14757 -12.02877 -11.94357 -11.53875 -11.33285 -11.05520 -10.54457 -10.46563 -10.06168 -9.57297 -9.10495 -8.06581 -6.21255 0.69821 0.75268 1.40912 1.42827 1.51903 2.42418 2.87107 3.11175 3.21275 3.52656 3.89586 4.08943 4.24131 4.28869 4.36927 4.38425 4.55276 4.61637 4.62722 4.64651 4.77169 4.78857 4.89473 4.93386 4.95684 5.01273 5.15359 5.24177 5.29457 5.40106 5.47406 5.59605 5.73002 5.76144 5.92643 6.15254 6.36223 6.40704 6.43057 6.83146 7.46006 8.98514 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.006166 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.002903 B = 4539.671483 C = 4962.658309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.137 3.863 4 H 0.086 0.914 5 C -0.164 4.164 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.130 4.130 9 C -0.015 4.015 10 C 0.046 3.954 11 C -0.509 4.509 12 H 0.056 0.944 13 C 0.029 3.971 14 N -0.897 5.897 15 Si 0.948 3.052 16 H -0.278 1.278 17 H -0.267 1.267 18 H -0.285 1.285 19 C -0.180 4.180 20 C -0.165 4.165 21 C -0.121 4.121 22 C -0.106 4.106 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.118 0.882 31 H 0.258 0.742 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 1.071 -0.898 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.080 3.920 4 H 0.104 0.896 5 C -0.222 4.222 6 C -0.118 4.118 7 C -0.132 4.132 8 C -0.148 4.148 9 C -0.016 4.016 10 C 0.046 3.954 11 C -0.546 4.546 12 H 0.074 0.926 13 C -0.172 4.172 14 N -0.533 5.533 15 Si 0.774 3.226 16 H -0.203 1.203 17 H -0.191 1.191 18 H -0.211 1.211 19 C -0.217 4.217 20 C -0.203 4.203 21 C -0.139 4.139 22 C -0.124 4.124 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.136 0.864 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.275 0.776 -1.037 14.334 hybrid contribution 1.098 0.481 -0.469 1.287 sum -13.177 1.257 -1.506 13.322 Atomic orbital electron populations 1.22978 0.79598 1.03698 1.00905 1.87935 1.21348 1.28091 1.95246 1.20842 0.90809 0.84913 0.95468 0.89599 1.22226 1.02700 1.01653 0.95606 1.19795 0.96531 0.95637 0.99804 1.21063 0.96708 0.98769 0.96624 1.20982 0.94406 0.98079 1.01351 1.19725 0.93437 0.93168 0.95238 1.17806 0.91341 0.94436 0.91850 1.20627 1.19710 1.04793 1.09475 0.92630 1.25660 0.98488 0.96752 0.96310 1.70109 1.42614 1.30088 1.10522 0.85704 0.79336 0.79211 0.78339 1.20338 1.19131 1.21088 1.22994 1.01304 1.05012 0.92411 1.22493 0.98574 0.94501 1.04727 1.20952 0.95896 0.99177 0.97922 1.20898 0.93420 0.98520 0.99526 0.92725 0.88787 0.93201 0.93371 0.90301 0.91229 0.83732 0.86439 0.93257 0.89742 0.89592 0.91089 0.92017 0.88442 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.66 16 2 O -0.41 -11.14 9.67 -148.98 -1.44 -12.58 16 3 C 0.14 3.65 2.93 29.85 0.09 3.73 16 4 H 0.09 1.86 7.65 -2.39 -0.02 1.84 16 5 C -0.16 -3.96 9.51 71.98 0.68 -3.28 16 6 C -0.12 -4.07 4.97 -19.86 -0.10 -4.17 16 7 C -0.11 -3.94 9.67 22.27 0.22 -3.72 16 8 C -0.13 -5.41 9.66 22.27 0.22 -5.19 16 9 C -0.02 -0.72 5.11 -19.87 -0.10 -0.82 16 10 C 0.05 2.31 1.44 -53.68 -0.08 2.23 16 11 C -0.51 -27.86 8.73 25.60 0.22 -27.64 16 12 H 0.06 3.01 7.82 -2.91 -0.02 2.99 16 13 C 0.03 1.62 5.42 84.66 0.46 2.07 16 14 N -0.90 -51.50 13.09 21.45 0.28 -51.21 16 15 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 C -0.18 -7.88 9.94 30.59 0.30 -7.57 16 20 C -0.17 -7.96 9.16 30.59 0.28 -7.68 16 21 C -0.12 -5.58 9.22 22.27 0.21 -5.38 16 22 C -0.11 -4.21 9.36 22.27 0.21 -4.01 16 23 H 0.05 0.79 7.87 -2.39 -0.02 0.77 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.47 7.87 -2.38 -0.02 1.45 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.14 3.85 8.04 -2.91 -0.02 3.82 16 30 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 31 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 32 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.07 3.27 7.17 -2.39 -0.02 3.25 16 35 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.10 4.78 7.06 -2.91 -0.02 4.76 16 37 H 0.12 4.42 7.78 -2.91 -0.02 4.40 16 Total: -1.00 -62.32 314.12 5.73 -56.60 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 1.03 Total: 21.41 kcal Atomic # 6 Polarization: -63.60 SS G_CDS: 3.83 Total: -59.76 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.28 Total: -51.21 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.44 Total: -12.58 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -62.32 5.73 -56.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.555 kcal (2) G-P(sol) polarization free energy of solvation -62.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds