Wall clock time and date at job start Mon Mar 30 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46861 * 2 1 4 4 O 1.42896 * 109.47392 * 240.00249 * 2 1 3 5 5 C 1.50701 * 109.47189 * 119.99917 * 2 1 3 6 6 C 1.38235 * 119.99808 * 265.00097 * 5 2 1 7 7 C 1.38243 * 119.99602 * 179.97438 * 6 5 2 8 8 C 1.38232 * 120.00069 * 0.09581 * 7 6 5 9 9 C 1.50701 * 119.99865 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47397 * 179.86416 * 9 8 7 11 11 C 1.50698 * 109.47235 * 299.86699 * 9 8 7 12 12 H 1.07999 * 120.00202 * 359.97438 * 11 9 8 13 13 C 1.37880 * 120.00060 * 179.97438 * 11 9 8 14 14 N 1.31516 * 119.99794 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99862 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47267 * 60.00501 * 15 13 11 17 17 H 1.48504 * 109.46895 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47447 * 299.99828 * 15 13 11 19 19 C 1.53004 * 109.46997 * 59.86456 * 9 8 7 20 20 C 1.53000 * 117.49843 * 128.61806 * 19 9 8 21 21 C 1.52992 * 60.00296 * 252.50956 * 20 19 9 22 22 C 1.38234 * 119.99842 * 359.83724 * 8 7 6 23 23 C 1.38230 * 119.99865 * 84.97843 * 5 2 1 24 24 H 1.08997 * 109.46866 * 300.00095 * 1 2 3 25 25 H 1.09005 * 109.46832 * 59.99952 * 1 2 3 26 26 H 1.08992 * 109.47095 * 180.02562 * 1 2 3 27 27 H 0.96700 * 113.99438 * 299.99862 * 4 2 1 28 28 H 1.08000 * 120.00616 * 359.70324 * 6 5 2 29 29 H 1.08001 * 119.99556 * 179.97438 * 7 6 5 30 30 H 0.97001 * 119.99581 * 180.02562 * 14 13 11 31 31 H 1.09004 * 115.55322 * 274.33068 * 19 9 8 32 32 H 1.09005 * 117.49508 * 0.02562 * 20 19 9 33 33 H 1.09005 * 117.49781 * 145.01505 * 20 19 9 34 34 H 1.08998 * 117.50411 * 252.50765 * 21 20 19 35 35 H 1.09007 * 117.51444 * 107.47845 * 21 20 19 36 36 H 1.08008 * 119.99453 * 180.11401 * 22 8 7 37 37 H 1.08001 * 120.00350 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2305 6 6 2.3611 0.0140 2.3610 7 6 2.8214 -0.6377 3.4899 8 6 2.9549 -2.0136 3.4875 9 6 3.4572 -2.7240 4.7180 10 1 3.4928 -3.7968 4.5291 11 6 4.8393 -2.2272 5.0558 12 1 5.3073 -1.4729 4.4407 13 6 5.5063 -2.7358 6.1501 14 7 4.9366 -3.6548 6.8988 15 14 7.2198 -2.1206 6.5683 16 1 7.1719 -0.6587 6.8250 17 1 7.7142 -2.8196 7.7816 18 1 8.1352 -2.3939 5.4313 19 6 2.5140 -2.4434 5.8896 20 6 1.9883 -3.6455 6.6767 21 6 1.0541 -2.8763 5.7406 22 6 2.6248 -2.7380 2.3575 23 6 2.1640 -2.0864 1.2288 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.7211 -1.5951 -1.2328 28 1 2.2625 1.0895 2.3609 29 1 3.0787 -0.0717 4.3730 30 1 5.4058 -4.0122 7.6689 31 1 2.7128 -1.5263 6.4441 32 1 2.3147 -4.6362 6.3601 33 1 1.8414 -3.5195 7.7495 34 1 0.2925 -2.2442 6.1973 35 1 0.7655 -3.3606 4.8076 36 1 2.7273 -3.8132 2.3563 37 1 1.9064 -2.6525 0.3458 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259994196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:11 Heat of formation + Delta-G solvation = -32.586657 kcal Electronic energy + Delta-G solvation = -17652.128934 eV Core-core repulsion = 14972.743251 eV Total energy + Delta-G solvation = -2679.385683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65316 -38.72348 -37.32442 -34.68668 -33.23078 -31.70100 -31.03745 -28.53758 -25.58644 -24.00098 -23.33482 -22.85916 -21.86217 -20.61624 -18.45628 -18.30770 -16.74916 -16.59396 -16.27860 -15.84676 -15.55194 -15.18265 -14.63578 -14.61969 -14.14060 -14.04085 -13.79548 -13.30484 -12.93935 -12.84414 -12.68466 -12.54937 -12.20126 -12.13218 -11.98559 -11.67212 -11.57803 -11.54106 -11.01685 -10.62191 -10.55158 -10.20410 -9.65645 -9.17551 -8.04892 -6.18193 0.63743 0.66810 1.41632 1.42235 1.49446 2.44161 3.01857 3.21553 3.36927 3.61061 3.81290 4.04941 4.21134 4.23517 4.33548 4.38424 4.40591 4.50539 4.65996 4.77764 4.79067 4.90108 4.94070 5.09018 5.10791 5.22810 5.25977 5.34576 5.35155 5.49010 5.58670 5.64111 5.75248 5.77426 5.87001 6.14133 6.29013 6.41506 6.82244 6.88866 7.48082 8.98574 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.006317 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.250595 B = 4431.699316 C = 5053.054095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.152 3.848 3 H 0.107 0.893 4 O -0.574 6.574 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.049 4.049 9 C 0.109 3.891 10 H 0.001 0.999 11 C -0.531 4.531 12 H 0.046 0.954 13 C 0.025 3.975 14 N -0.895 5.895 15 Si 0.944 3.056 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.277 1.277 19 C -0.097 4.097 20 C -0.143 4.143 21 C -0.189 4.189 22 C -0.144 4.144 23 C -0.110 4.110 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.385 0.615 28 H 0.138 0.862 29 H 0.107 0.893 30 H 0.259 0.741 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.325 4.986 -9.952 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.093 3.907 3 H 0.125 0.875 4 O -0.382 6.382 5 C -0.141 4.141 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.049 4.049 9 C 0.090 3.910 10 H 0.019 0.981 11 C -0.569 4.569 12 H 0.064 0.936 13 C -0.176 4.176 14 N -0.532 5.532 15 Si 0.771 3.229 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.203 1.203 19 C -0.116 4.116 20 C -0.180 4.180 21 C -0.226 4.226 22 C -0.162 4.162 23 C -0.128 4.128 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.235 0.765 28 H 0.156 0.844 29 H 0.125 0.875 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.031 5.439 -9.899 14.461 hybrid contribution 1.054 -0.609 1.069 1.620 sum -7.976 4.830 -8.831 12.843 Atomic orbital electron populations 1.22416 0.94099 1.03213 1.03219 1.20754 0.93869 0.95516 0.80552 0.87523 1.86560 1.77922 1.30265 1.43432 1.20627 1.02234 0.94349 0.96869 1.21127 0.99338 1.00295 0.92570 1.20983 1.00205 0.94176 0.98526 1.20335 0.94360 0.94475 0.95727 1.17309 0.92487 0.93276 0.87890 0.98052 1.21242 1.00873 1.23152 1.11601 0.93596 1.25602 1.00656 0.95178 0.96187 1.70126 1.38244 1.28129 1.16728 0.85835 0.81103 0.78585 0.77409 1.19912 1.20898 1.20274 1.21949 0.92437 0.97116 1.00054 1.22354 1.03095 0.96491 0.96074 1.23030 0.93734 1.04836 1.01041 1.21153 1.01631 0.99699 0.93734 1.20954 0.99865 0.94142 0.97855 0.91226 0.90602 0.91872 0.76464 0.84435 0.87497 0.93231 0.91782 0.91415 0.90718 0.88676 0.89915 0.86989 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.52 71.98 0.69 -2.27 16 2 C 0.15 3.31 3.83 29.85 0.11 3.43 16 3 H 0.11 2.22 8.05 -2.38 -0.02 2.20 16 4 O -0.57 -12.93 13.14 -148.98 -1.96 -14.89 16 5 C -0.14 -3.96 5.00 -19.87 -0.10 -4.06 16 6 C -0.12 -3.61 9.68 22.27 0.22 -3.40 16 7 C -0.12 -4.70 8.83 22.27 0.20 -4.50 16 8 C -0.05 -2.08 4.38 -19.87 -0.09 -2.17 16 9 C 0.11 5.41 2.10 -12.29 -0.03 5.38 16 10 H 0.00 0.08 7.63 -2.39 -0.02 0.06 16 11 C -0.53 -29.11 8.22 25.60 0.21 -28.90 16 12 H 0.05 2.55 7.60 -2.91 -0.02 2.53 16 13 C 0.02 1.35 5.30 84.66 0.45 1.80 16 14 N -0.89 -50.17 11.44 21.45 0.25 -49.92 16 15 Si 0.94 43.66 29.54 68.60 2.03 45.69 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 C -0.10 -4.51 3.86 -10.79 -0.04 -4.55 16 20 C -0.14 -6.31 9.05 30.59 0.28 -6.03 16 21 C -0.19 -7.33 9.87 30.59 0.30 -7.03 16 22 C -0.14 -5.35 9.67 22.27 0.22 -5.13 16 23 C -0.11 -3.26 9.33 22.27 0.21 -3.06 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.39 6.18 7.39 -74.06 -0.55 5.63 16 28 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.11 4.35 8.05 -2.91 -0.02 4.33 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.06 3.18 8.11 -2.38 -0.02 3.16 16 32 H 0.07 3.20 8.05 -2.38 -0.02 3.18 16 33 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 34 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 36 H 0.11 4.07 7.95 -2.91 -0.02 4.05 16 37 H 0.14 3.11 6.62 -2.91 -0.02 3.09 16 Total: -1.00 -61.24 308.76 3.43 -57.81 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.50 Total: 21.79 kcal Atomic # 6 Polarization: -63.10 SS G_CDS: 2.62 Total: -60.48 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.25 Total: -49.92 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.96 Total: -14.89 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -61.24 3.43 -57.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259994196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.223 kcal (2) G-P(sol) polarization free energy of solvation -61.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds