Wall clock time and date at job start Mon Mar 30 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46742 * 2 1 4 4 C 1.50700 * 109.47110 * 240.00222 * 2 1 3 5 5 H 1.07999 * 120.00097 * 245.46209 * 4 2 1 6 6 C 1.37875 * 120.00071 * 65.46444 * 4 2 1 7 7 N 1.31518 * 120.00083 * 9.59001 * 6 4 2 8 8 Si 1.86807 * 120.00028 * 189.59712 * 6 4 2 9 9 H 1.48498 * 109.47153 * 84.98775 * 8 6 4 10 10 H 1.48498 * 109.47014 * 204.99553 * 8 6 4 11 11 H 1.48506 * 109.46801 * 324.99354 * 8 6 4 12 12 C 1.50698 * 109.46810 * 120.00152 * 2 1 3 13 13 C 1.38243 * 119.99667 * 239.99908 * 12 2 1 14 14 C 1.38229 * 119.99845 * 180.02562 * 13 12 2 15 15 C 1.38241 * 120.00290 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00226 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.27299 * 337.91171 * 16 15 14 18 18 C 1.54949 * 110.30926 * 99.99925 * 16 15 14 19 19 C 1.55306 * 100.97907 * 155.33813 * 18 16 15 20 20 C 1.54433 * 102.22951 * 325.92113 * 19 18 16 21 21 O 1.43241 * 107.60962 * 21.29911 * 20 19 18 22 22 C 1.38234 * 119.99618 * 0.25421 * 15 14 13 23 23 C 1.38234 * 120.00279 * 60.02692 * 12 2 1 24 24 H 1.09004 * 109.46594 * 183.26130 * 1 2 3 25 25 H 1.08995 * 109.47254 * 303.26058 * 1 2 3 26 26 H 1.09001 * 109.47149 * 63.26215 * 1 2 3 27 27 H 0.96997 * 119.99495 * 180.02562 * 7 6 4 28 28 H 1.07994 * 120.00028 * 0.02562 * 13 12 2 29 29 H 1.08005 * 120.00094 * 179.97438 * 14 13 12 30 30 H 1.08991 * 111.12619 * 273.27841 * 18 16 15 31 31 H 1.08997 * 111.12294 * 37.40287 * 18 16 15 32 32 H 1.08997 * 110.84810 * 84.07962 * 19 18 16 33 33 H 1.08997 * 110.84876 * 207.69806 * 19 18 16 34 34 H 1.09004 * 109.79451 * 261.79196 * 20 19 18 35 35 H 1.09004 * 109.93069 * 140.87520 * 20 19 18 36 36 H 1.08000 * 119.99804 * 179.72282 * 22 15 14 37 37 H 1.07999 * 119.99804 * 359.97438 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7947 -0.1772 -2.4796 7 7 1.3001 1.0360 -2.5935 8 14 2.1751 -1.1783 -4.0102 9 1 1.0225 -2.0606 -4.3237 10 1 2.4222 -0.2619 -5.1523 11 1 3.3832 -2.0083 -3.7712 12 6 2.0323 -0.7104 1.2304 13 6 2.8271 -0.0386 2.1404 14 6 3.2882 -0.6904 3.2688 15 6 2.9543 -2.0139 3.4876 16 6 3.4575 -2.7246 4.7175 17 1 4.3444 -2.2243 5.1065 18 6 2.3502 -2.7753 5.8002 19 6 2.7932 -4.0189 6.6183 20 6 3.3985 -4.9293 5.5276 21 8 3.7497 -4.0981 4.4151 22 6 2.1634 -2.6870 2.5753 23 6 1.6988 -2.0340 1.4489 24 1 -0.3633 -1.0261 0.0585 25 1 -0.3633 0.5636 0.8593 26 1 -0.3633 0.4624 -0.9178 27 1 1.1325 1.4109 -3.4723 28 1 3.0877 0.9954 1.9697 29 1 3.9095 -0.1656 3.9796 30 1 2.3612 -1.8759 6.4157 31 1 1.3689 -2.9295 5.3516 32 1 3.5458 -3.7481 7.3588 33 1 1.9359 -4.4971 7.0920 34 1 2.6635 -5.6719 5.2169 35 1 4.2883 -5.4282 5.9117 36 1 1.9062 -3.7223 2.7440 37 1 1.0780 -2.5589 0.7380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259995419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:07 Heat of formation + Delta-G solvation = -39.632488 kcal Electronic energy + Delta-G solvation = -17416.267014 eV Core-core repulsion = 14736.575801 eV Total energy + Delta-G solvation = -2679.691213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78923 -38.20919 -34.43845 -32.22042 -31.78064 -30.23528 -29.81076 -27.03802 -25.06844 -23.21647 -22.16426 -21.69735 -20.90035 -19.41616 -16.83075 -16.44497 -16.09384 -15.27626 -14.89404 -14.42778 -14.09400 -13.77272 -13.32015 -13.05479 -12.77372 -12.70142 -12.11749 -11.85121 -11.68904 -11.58559 -11.44028 -11.10395 -10.88615 -10.81958 -10.67672 -10.48912 -10.25768 -10.01634 -9.56778 -9.29447 -9.02310 -8.33593 -8.19726 -7.67116 -6.02432 -4.04192 2.04809 2.13363 3.32524 3.38735 3.42715 3.86401 4.40568 4.42495 4.56977 4.73873 4.81013 5.12461 5.15685 5.30880 5.42559 5.51173 5.57977 5.61569 5.67811 5.76696 5.80044 6.01509 6.05137 6.29541 6.34909 6.64169 6.72038 6.81624 6.94925 6.98983 7.15406 7.23092 7.29209 7.38988 7.68514 7.78581 7.98754 7.99813 8.40661 8.98535 9.58873 11.06303 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038554 B = 0.004936 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.073066 B = 5671.338594 C = 6002.732582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.067 3.933 3 H 0.041 0.959 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.025 4.025 13 C -0.132 4.132 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.130 3.870 17 H 0.073 0.927 18 C -0.146 4.146 19 C -0.157 4.157 20 C 0.049 3.951 21 O -0.373 6.373 22 C -0.099 4.099 23 C -0.116 4.116 24 H 0.030 0.970 25 H 0.013 0.987 26 H 0.067 0.933 27 H 0.261 0.739 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -6.984 16.321 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.059 0.941 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.025 4.025 13 C -0.150 4.150 14 C -0.131 4.131 15 C -0.125 4.125 16 C 0.073 3.927 17 H 0.090 0.910 18 C -0.184 4.184 19 C -0.194 4.194 20 C -0.028 4.028 21 O -0.293 6.293 22 C -0.117 4.117 23 C -0.134 4.134 24 H 0.049 0.951 25 H 0.032 0.968 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.641 -6.922 15.992 17.503 hybrid contribution 0.154 -0.463 -0.708 0.860 sum 1.795 -7.385 15.284 17.069 Atomic orbital electron populations 1.21730 0.98061 0.98728 0.99812 1.17928 0.92371 0.96049 0.88800 0.94054 1.21090 1.35633 1.07996 0.89943 0.92412 1.24949 0.95251 0.94627 0.98928 1.69968 1.45069 1.13921 1.23745 0.86654 0.78818 0.80180 0.82686 1.20537 1.21324 1.19902 1.20700 0.92627 0.93832 0.95327 1.21067 0.99594 0.99978 0.94401 1.20734 1.00553 0.93984 0.97832 1.19419 1.01747 0.94376 0.96929 1.21674 0.95910 0.82535 0.92578 0.90963 1.23315 0.99907 0.98260 0.96883 1.23141 1.01332 0.96587 0.98380 1.23100 0.99186 0.93754 0.86734 1.88500 1.85378 1.16931 1.38467 1.20828 0.97507 0.98988 0.94367 1.21077 1.00660 0.94920 0.96725 0.95072 0.96804 0.91436 0.92954 0.86567 0.87227 0.89921 0.89993 0.90694 0.90157 0.91531 0.91705 0.86970 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.93 37.16 0.33 -2.65 16 2 C 0.07 1.68 2.34 -92.92 -0.22 1.46 16 3 H 0.04 1.12 7.82 -51.93 -0.41 0.72 16 4 C -0.51 -14.00 8.19 -34.44 -0.28 -14.29 16 5 H 0.06 1.61 7.55 -52.49 -0.40 1.21 16 6 C 0.06 1.78 5.17 -17.82 -0.09 1.69 16 7 N -0.89 -25.49 12.16 55.43 0.67 -24.82 16 8 Si 0.89 21.44 29.55 -169.99 -5.02 16.42 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C -0.02 -0.55 4.75 -104.62 -0.50 -1.04 16 13 C -0.13 -2.60 9.67 -39.58 -0.38 -2.98 16 14 C -0.11 -1.91 9.69 -39.58 -0.38 -2.30 16 15 C -0.12 -2.08 5.03 -104.62 -0.53 -2.61 16 16 C 0.13 1.78 3.65 -26.86 -0.10 1.68 16 17 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 18 C -0.15 -1.58 6.56 -24.48 -0.16 -1.74 16 19 C -0.16 -1.37 7.02 -24.76 -0.17 -1.54 16 20 C 0.05 0.52 7.80 37.91 0.30 0.81 16 21 O -0.37 -5.48 10.26 -35.23 -0.36 -5.85 16 22 C -0.10 -1.79 9.37 -39.58 -0.37 -2.16 16 23 C -0.12 -2.37 8.62 -39.58 -0.34 -2.71 16 24 H 0.03 0.69 7.28 -51.93 -0.38 0.31 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 1.74 6.84 -51.93 -0.36 1.39 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.12 2.16 7.95 -52.49 -0.42 1.75 16 29 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 1.87 7.68 -52.49 -0.40 1.47 16 37 H 0.12 2.48 7.55 -52.49 -0.40 2.09 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -29.47 304.07 -8.71 -38.18 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.68 Total: -0.14 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -2.90 Total: -28.37 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.67 Total: -24.82 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.36 Total: -5.85 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.47 -8.71 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.457 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds