Wall clock time and date at job start Mon Mar 30 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46742 * 2 1 4 4 C 1.50700 * 109.47110 * 240.00222 * 2 1 3 5 5 H 1.07999 * 120.00097 * 245.46209 * 4 2 1 6 6 C 1.37875 * 120.00071 * 65.46444 * 4 2 1 7 7 N 1.31518 * 120.00083 * 9.59001 * 6 4 2 8 8 Si 1.86807 * 120.00028 * 189.59712 * 6 4 2 9 9 H 1.48498 * 109.47153 * 84.98775 * 8 6 4 10 10 H 1.48498 * 109.47014 * 204.99553 * 8 6 4 11 11 H 1.48506 * 109.46801 * 324.99354 * 8 6 4 12 12 C 1.50698 * 109.46810 * 120.00152 * 2 1 3 13 13 C 1.38243 * 119.99667 * 239.99908 * 12 2 1 14 14 C 1.38229 * 119.99845 * 180.02562 * 13 12 2 15 15 C 1.38241 * 120.00290 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00226 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.27299 * 337.91171 * 16 15 14 18 18 C 1.54949 * 110.30926 * 99.99925 * 16 15 14 19 19 C 1.55306 * 100.97907 * 155.33813 * 18 16 15 20 20 C 1.54433 * 102.22951 * 325.92113 * 19 18 16 21 21 O 1.43241 * 107.60962 * 21.29911 * 20 19 18 22 22 C 1.38234 * 119.99618 * 0.25421 * 15 14 13 23 23 C 1.38234 * 120.00279 * 60.02692 * 12 2 1 24 24 H 1.09004 * 109.46594 * 183.26130 * 1 2 3 25 25 H 1.08995 * 109.47254 * 303.26058 * 1 2 3 26 26 H 1.09001 * 109.47149 * 63.26215 * 1 2 3 27 27 H 0.96997 * 119.99495 * 180.02562 * 7 6 4 28 28 H 1.07994 * 120.00028 * 0.02562 * 13 12 2 29 29 H 1.08005 * 120.00094 * 179.97438 * 14 13 12 30 30 H 1.08991 * 111.12619 * 273.27841 * 18 16 15 31 31 H 1.08997 * 111.12294 * 37.40287 * 18 16 15 32 32 H 1.08997 * 110.84810 * 84.07962 * 19 18 16 33 33 H 1.08997 * 110.84876 * 207.69806 * 19 18 16 34 34 H 1.09004 * 109.79451 * 261.79196 * 20 19 18 35 35 H 1.09004 * 109.93069 * 140.87520 * 20 19 18 36 36 H 1.08000 * 119.99804 * 179.72282 * 22 15 14 37 37 H 1.07999 * 119.99804 * 359.97438 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7947 -0.1772 -2.4796 7 7 1.3001 1.0360 -2.5935 8 14 2.1751 -1.1783 -4.0102 9 1 1.0225 -2.0606 -4.3237 10 1 2.4222 -0.2619 -5.1523 11 1 3.3832 -2.0083 -3.7712 12 6 2.0323 -0.7104 1.2304 13 6 2.8271 -0.0386 2.1404 14 6 3.2882 -0.6904 3.2688 15 6 2.9543 -2.0139 3.4876 16 6 3.4575 -2.7246 4.7175 17 1 4.3444 -2.2243 5.1065 18 6 2.3502 -2.7753 5.8002 19 6 2.7932 -4.0189 6.6183 20 6 3.3985 -4.9293 5.5276 21 8 3.7497 -4.0981 4.4151 22 6 2.1634 -2.6870 2.5753 23 6 1.6988 -2.0340 1.4489 24 1 -0.3633 -1.0261 0.0585 25 1 -0.3633 0.5636 0.8593 26 1 -0.3633 0.4624 -0.9178 27 1 1.1325 1.4109 -3.4723 28 1 3.0877 0.9954 1.9697 29 1 3.9095 -0.1656 3.9796 30 1 2.3612 -1.8759 6.4157 31 1 1.3689 -2.9295 5.3516 32 1 3.5458 -3.7481 7.3588 33 1 1.9359 -4.4971 7.0920 34 1 2.6635 -5.6719 5.2169 35 1 4.2883 -5.4282 5.9117 36 1 1.9062 -3.7223 2.7440 37 1 1.0780 -2.5589 0.7380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:06 Heat of formation + Delta-G solvation = -54.904141 kcal Electronic energy + Delta-G solvation = -17416.929243 eV Core-core repulsion = 14736.575801 eV Total energy + Delta-G solvation = -2680.353442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92274 -39.53942 -36.26801 -33.71171 -32.95321 -31.70770 -31.29672 -28.32282 -27.17255 -24.57355 -23.62406 -22.49048 -22.31466 -21.01949 -18.33098 -17.87595 -17.36524 -16.81339 -16.14619 -15.91576 -15.63034 -15.05215 -14.58589 -14.43323 -14.23269 -14.02978 -13.73896 -13.48717 -13.29131 -12.77443 -12.72821 -12.63200 -12.41335 -12.29392 -12.18094 -11.91418 -11.74701 -11.63659 -11.13511 -11.05659 -10.49946 -10.46109 -9.67578 -9.20526 -8.14528 -6.23427 0.58510 0.64538 1.39964 1.40952 1.50551 2.41979 2.82153 3.14440 3.20010 3.59235 3.83915 4.02932 4.09306 4.21710 4.30194 4.35386 4.38651 4.48240 4.72432 4.80674 4.84289 4.86763 4.93100 4.98007 4.99132 5.06719 5.13135 5.27535 5.31105 5.32184 5.53275 5.63114 5.70513 5.72789 5.93899 6.11157 6.17590 6.26992 6.37915 6.84886 7.42804 8.93295 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038554 B = 0.004936 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.073066 B = 5671.338594 C = 6002.732582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.068 3.932 3 H 0.010 0.990 4 C -0.523 4.523 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.272 1.272 12 C -0.056 4.056 13 C -0.143 4.143 14 C -0.105 4.105 15 C -0.116 4.116 16 C 0.126 3.874 17 H 0.089 0.911 18 C -0.144 4.144 19 C -0.145 4.145 20 C 0.039 3.961 21 O -0.404 6.404 22 C -0.100 4.100 23 C -0.128 4.128 24 H 0.037 0.963 25 H 0.030 0.970 26 H 0.041 0.959 27 H 0.263 0.737 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 -8.237 18.528 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.049 3.951 3 H 0.028 0.972 4 C -0.561 4.561 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.775 3.225 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.197 1.197 12 C -0.056 4.056 13 C -0.161 4.161 14 C -0.123 4.123 15 C -0.116 4.116 16 C 0.069 3.931 17 H 0.107 0.893 18 C -0.181 4.181 19 C -0.183 4.183 20 C -0.037 4.037 21 O -0.324 6.324 22 C -0.118 4.118 23 C -0.146 4.146 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.164 0.836 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.390 -8.185 18.211 20.108 hybrid contribution -0.042 -0.113 -1.294 1.300 sum 2.348 -8.298 16.916 18.988 Atomic orbital electron populations 1.21568 0.97438 0.99079 0.99126 1.17775 0.92972 0.94381 0.89956 0.97227 1.21347 1.35597 1.07774 0.91391 0.93403 1.25686 0.95224 0.95510 1.01731 1.70075 1.45986 1.15161 1.24404 0.85694 0.78727 0.78817 0.79213 1.19741 1.20731 1.19730 1.20469 0.95175 0.94683 0.95288 1.21186 0.99535 1.00293 0.95133 1.21056 0.99895 0.94158 0.97196 1.19873 0.99856 0.94415 0.97443 1.21799 0.97474 0.82306 0.91546 0.89350 1.23300 0.98225 1.00203 0.96395 1.23131 1.02331 0.94999 0.97807 1.23347 1.00194 0.93749 0.86421 1.88462 1.85705 1.17562 1.40673 1.20960 0.97516 0.99552 0.93818 1.21008 1.01380 0.94504 0.97722 0.94377 0.95081 0.94038 0.92849 0.86420 0.83558 0.88116 0.91132 0.88946 0.88375 0.91210 0.90301 0.85753 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 8.93 71.98 0.64 -4.96 16 2 C 0.07 3.54 2.34 -12.28 -0.03 3.51 16 3 H 0.01 0.55 7.82 -2.39 -0.02 0.53 16 4 C -0.52 -29.72 8.19 25.60 0.21 -29.51 16 5 H 0.05 2.74 7.55 -2.91 -0.02 2.72 16 6 C 0.02 0.99 5.17 84.65 0.44 1.43 16 7 N -0.92 -54.01 12.16 21.45 0.26 -53.75 16 8 Si 0.95 44.63 29.55 68.60 2.03 46.66 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 12 C -0.06 -2.53 4.75 -19.86 -0.09 -2.62 16 13 C -0.14 -5.61 9.67 22.27 0.22 -5.39 16 14 C -0.11 -3.35 9.69 22.27 0.22 -3.13 16 15 C -0.12 -3.63 5.03 -19.87 -0.10 -3.73 16 16 C 0.13 3.05 3.65 30.51 0.11 3.16 16 17 H 0.09 1.88 8.06 -2.39 -0.02 1.86 16 18 C -0.14 -2.60 6.56 32.05 0.21 -2.39 16 19 C -0.15 -1.95 7.02 31.87 0.22 -1.72 16 20 C 0.04 0.70 7.80 72.47 0.56 1.27 16 21 O -0.40 -10.86 10.26 -148.98 -1.53 -12.39 16 22 C -0.10 -3.56 9.37 22.27 0.21 -3.35 16 23 C -0.13 -5.32 8.62 22.27 0.19 -5.13 16 24 H 0.04 1.75 7.28 -2.38 -0.02 1.73 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 2.21 6.84 -2.39 -0.02 2.19 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.12 4.44 7.95 -2.91 -0.02 4.42 16 29 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.12 4.03 7.68 -2.91 -0.02 4.01 16 37 H 0.11 4.65 7.55 -2.91 -0.02 4.63 16 Total: -1.00 -64.68 304.07 4.80 -59.88 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.03 Total: 12.17 kcal Atomic # 6 Polarization: -55.58 SS G_CDS: 3.01 Total: -52.57 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.26 Total: -53.75 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -1.53 Total: -12.39 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.68 4.80 -59.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.980 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds