Wall clock time and date at job start Mon Mar 30 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47367 * 2 1 4 4 C 1.50709 * 109.47131 * 119.99703 * 2 1 3 5 5 H 1.07995 * 119.99829 * 120.00120 * 4 2 1 6 6 C 1.37879 * 119.99846 * 299.99877 * 4 2 1 7 7 N 1.31509 * 119.99822 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99664 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47201 * 89.99910 * 8 6 4 10 10 H 1.48503 * 109.46822 * 210.00232 * 8 6 4 11 11 H 1.48497 * 109.47047 * 329.99653 * 8 6 4 12 12 C 1.50693 * 109.47067 * 239.99414 * 2 1 3 13 13 C 1.38244 * 120.00014 * 119.99746 * 12 2 1 14 14 C 1.38226 * 120.00077 * 179.97438 * 13 12 2 15 15 C 1.38232 * 120.00126 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99990 * 180.02562 * 15 14 13 17 17 H 1.09003 * 110.55428 * 27.88186 * 16 15 14 18 18 C 1.54994 * 110.62228 * 265.00043 * 16 15 14 19 19 C 1.54807 * 102.09860 * 204.47433 * 18 16 15 20 20 C 1.54105 * 104.18504 * 20.88235 * 19 18 16 21 21 O 1.43746 * 107.42259 * 1.95340 * 20 19 18 22 22 C 1.38229 * 120.00311 * 0.27582 * 15 14 13 23 23 C 1.38238 * 120.00378 * 299.98207 * 12 2 1 24 24 H 1.09005 * 109.47259 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47168 * 299.99859 * 1 2 3 26 26 H 1.08991 * 109.47685 * 60.00176 * 1 2 3 27 27 H 0.97004 * 119.99897 * 180.02562 * 7 6 4 28 28 H 1.07997 * 119.99620 * 359.97438 * 13 12 2 29 29 H 1.08002 * 119.99766 * 180.02562 * 14 13 12 30 30 H 1.09007 * 110.90973 * 86.27291 * 18 16 15 31 31 H 1.09003 * 110.93565 * 322.69212 * 18 16 15 32 32 H 1.08996 * 110.48875 * 262.20504 * 19 18 16 33 33 H 1.09003 * 110.60294 * 139.60995 * 19 18 16 34 34 H 1.09002 * 109.88076 * 121.45430 * 20 19 18 35 35 H 1.08996 * 109.87584 * 242.45546 * 20 19 18 36 36 H 1.08001 * 120.00789 * 179.72493 * 22 15 14 37 37 H 1.07994 * 119.99801 * 359.97438 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5438 4.4119 10 1 1.3444 -0.9487 5.1123 11 1 2.4880 -2.5651 3.7123 12 6 2.0323 -0.7105 -1.2303 13 6 2.8270 -0.0387 -2.1404 14 6 3.2882 -0.6906 -3.2687 15 6 2.9552 -2.0144 -3.4868 16 6 3.4585 -2.7252 -4.7166 17 1 4.4009 -2.2912 -5.0508 18 6 2.4014 -2.6721 -5.8489 19 6 2.7757 -3.9095 -6.7006 20 6 3.5847 -4.8000 -5.7376 21 8 3.6113 -4.1400 -4.4609 22 6 2.1563 -2.6847 -2.5795 23 6 1.6987 -2.0341 -1.4488 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 0.7087 1.1615 3.4844 28 1 3.0875 0.9954 -1.9698 29 1 3.9094 -0.1659 -3.9795 30 1 2.4999 -1.7554 -6.4304 31 1 1.3933 -2.7680 -5.4454 32 1 3.3877 -3.6149 -7.5530 33 1 1.8785 -4.4288 -7.0375 34 1 3.1045 -5.7738 -5.6415 35 1 4.6008 -4.9233 -6.1123 36 1 1.8924 -3.7176 -2.7521 37 1 1.0784 -2.5591 -0.7376 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:08 Heat of formation + Delta-G solvation = -53.279436 kcal Electronic energy + Delta-G solvation = -17405.552464 eV Core-core repulsion = 14725.269474 eV Total energy + Delta-G solvation = -2680.282989 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88806 -39.53924 -36.30621 -33.69550 -32.93231 -31.70495 -31.22659 -28.26550 -27.21159 -24.64204 -23.67197 -22.48962 -22.15999 -21.03501 -18.32146 -17.85370 -17.26587 -16.81235 -16.28403 -15.86867 -15.55037 -15.12459 -14.62660 -14.54242 -14.26544 -14.00244 -13.76773 -13.34234 -13.21422 -12.84849 -12.64307 -12.58643 -12.38251 -12.28379 -12.16571 -11.95064 -11.71206 -11.55967 -11.15853 -11.01418 -10.61951 -10.47765 -9.68230 -9.20507 -8.10633 -6.24537 0.58164 0.64059 1.40189 1.40997 1.51642 2.42048 2.85182 3.13674 3.18401 3.64399 3.85551 4.04646 4.10300 4.22388 4.28588 4.34644 4.38905 4.48402 4.71856 4.79468 4.85956 4.86923 4.93545 4.97978 5.00812 5.12848 5.17951 5.25667 5.31021 5.32372 5.53219 5.64492 5.68088 5.71198 6.04080 6.07905 6.12056 6.26665 6.38468 6.83603 7.43134 8.93749 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039299 B = 0.004887 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.313906 B = 5727.876983 C = 6051.848719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.069 3.931 3 H 0.007 0.993 4 C -0.522 4.522 5 H 0.047 0.953 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.271 1.271 12 C -0.057 4.057 13 C -0.142 4.142 14 C -0.104 4.104 15 C -0.112 4.112 16 C 0.122 3.878 17 H 0.091 0.909 18 C -0.142 4.142 19 C -0.147 4.147 20 C 0.036 3.964 21 O -0.400 6.400 22 C -0.102 4.102 23 C -0.127 4.127 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.025 0.975 27 H 0.262 0.738 28 H 0.121 0.879 29 H 0.149 0.851 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 -7.289 -18.514 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 H 0.025 0.975 4 C -0.560 4.560 5 H 0.065 0.935 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.196 1.196 12 C -0.057 4.057 13 C -0.160 4.160 14 C -0.122 4.122 15 C -0.112 4.112 16 C 0.065 3.935 17 H 0.108 0.892 18 C -0.180 4.180 19 C -0.185 4.185 20 C -0.040 4.040 21 O -0.320 6.320 22 C -0.120 4.120 23 C -0.146 4.146 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.167 0.833 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.142 0.858 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.819 -7.287 -18.181 19.956 hybrid contribution 0.057 -0.125 1.228 1.236 sum 3.876 -7.412 -16.953 18.904 Atomic orbital electron populations 1.21610 0.97374 0.99095 0.99709 1.17775 0.93204 0.94035 0.89943 0.97523 1.21370 1.31093 1.12232 0.91291 0.93485 1.25697 0.95227 0.95721 1.01692 1.70003 1.37489 1.24025 1.24046 0.85624 0.78204 0.79053 0.79222 1.20130 1.20506 1.19613 1.20487 0.95143 0.94615 0.95442 1.21192 0.99449 1.00352 0.95051 1.21036 0.99990 0.93951 0.97228 1.19697 0.99917 0.94453 0.97096 1.21973 0.98231 0.81520 0.91760 0.89158 1.23146 0.98817 1.00095 0.95940 1.22937 1.01464 0.95438 0.98648 1.23356 1.00571 0.97021 0.83080 1.88960 1.94676 1.18816 1.29509 1.20974 0.97518 0.99679 0.93796 1.20997 1.01338 0.94608 0.97610 0.95188 0.92135 0.95602 0.92851 0.86146 0.83345 0.88331 0.91575 0.88660 0.89466 0.89351 0.91255 0.85778 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.78 71.98 0.63 -5.41 16 2 C 0.07 3.61 2.48 -12.29 -0.03 3.58 16 3 H 0.01 0.38 7.88 -2.39 -0.02 0.36 16 4 C -0.52 -29.68 8.24 25.60 0.21 -29.47 16 5 H 0.05 2.70 7.60 -2.91 -0.02 2.68 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 8 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 C -0.06 -2.57 4.74 -19.87 -0.09 -2.66 16 13 C -0.14 -5.51 9.67 22.27 0.22 -5.29 16 14 C -0.10 -3.27 9.71 22.27 0.22 -3.06 16 15 C -0.11 -3.51 5.09 -19.87 -0.10 -3.61 16 16 C 0.12 2.96 3.55 30.53 0.11 3.07 16 17 H 0.09 1.88 8.10 -2.39 -0.02 1.86 16 18 C -0.14 -2.65 6.58 31.89 0.21 -2.44 16 19 C -0.15 -2.04 7.01 31.58 0.22 -1.82 16 20 C 0.04 0.64 7.69 72.36 0.56 1.19 16 21 O -0.40 -10.73 10.29 -148.98 -1.53 -12.26 16 22 C -0.10 -3.67 9.38 22.27 0.21 -3.46 16 23 C -0.13 -5.40 8.71 22.27 0.19 -5.20 16 24 H 0.03 1.44 7.39 -2.38 -0.02 1.42 16 25 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 26 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.12 4.43 7.95 -2.91 -0.02 4.41 16 29 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.07 1.43 8.05 -2.39 -0.02 1.41 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.12 4.18 7.52 -2.91 -0.02 4.16 16 37 H 0.11 4.68 7.58 -2.91 -0.02 4.65 16 Total: -1.00 -64.21 302.75 4.76 -59.45 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.03 Total: 12.66 kcal Atomic # 6 Polarization: -56.27 SS G_CDS: 3.00 Total: -53.27 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.24 Total: -53.23 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.53 Total: -12.26 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.21 4.76 -59.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.170 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds