Wall clock time and date at job start Mon Mar 30 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47592 * 2 1 4 4 C 1.50703 * 109.46724 * 120.00030 * 2 1 3 5 5 H 1.08007 * 119.99737 * 119.99790 * 4 2 1 6 6 C 1.37870 * 120.00188 * 299.99573 * 4 2 1 7 7 N 1.31511 * 120.00549 * 180.02562 * 6 4 2 8 8 Si 1.86808 * 120.00037 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.46885 * 89.99564 * 8 6 4 10 10 H 1.48497 * 109.47259 * 209.99812 * 8 6 4 11 11 H 1.48502 * 109.46957 * 330.00226 * 8 6 4 12 12 C 1.50699 * 109.46699 * 239.99642 * 2 1 3 13 13 C 1.38237 * 119.99819 * 120.00796 * 12 2 1 14 14 C 1.38233 * 120.00063 * 179.97438 * 13 12 2 15 15 C 1.38241 * 120.00031 * 359.95822 * 14 13 12 16 16 C 1.50696 * 119.99775 * 180.02562 * 15 14 13 17 17 H 1.08997 * 110.67758 * 337.02703 * 16 15 14 18 18 C 1.54998 * 110.61941 * 99.99881 * 16 15 14 19 19 C 1.54817 * 102.12466 * 155.53916 * 18 16 15 20 20 C 1.54100 * 104.18606 * 339.09929 * 19 18 16 21 21 O 1.43746 * 107.29659 * 357.97343 * 20 19 18 22 22 C 1.38235 * 119.99899 * 0.27045 * 15 14 13 23 23 C 1.38234 * 120.00369 * 299.97809 * 12 2 1 24 24 H 1.09005 * 109.47245 * 300.00563 * 1 2 3 25 25 H 1.09006 * 109.46980 * 60.00038 * 1 2 3 26 26 H 1.09005 * 109.47539 * 180.02562 * 1 2 3 27 27 H 0.96995 * 120.00760 * 179.97438 * 7 6 4 28 28 H 1.07997 * 119.99900 * 359.97178 * 13 12 2 29 29 H 1.07995 * 120.00397 * 179.97438 * 14 13 12 30 30 H 1.09002 * 110.90913 * 37.32131 * 18 16 15 31 31 H 1.08997 * 110.90321 * 273.75248 * 18 16 15 32 32 H 1.08991 * 110.48506 * 97.77523 * 19 18 16 33 33 H 1.08995 * 110.48134 * 220.29142 * 19 18 16 34 34 H 1.09002 * 109.87699 * 117.39650 * 20 19 18 35 35 H 1.08998 * 109.87837 * 238.39836 * 20 19 18 36 36 H 1.07997 * 120.00237 * 179.73250 * 22 15 14 37 37 H 1.08000 * 119.99725 * 0.02562 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8590 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0322 -0.7105 -1.2304 13 6 2.8271 -0.0388 -2.1404 14 6 3.2882 -0.6906 -3.2688 15 6 2.9552 -2.0145 -3.4869 16 6 3.4585 -2.7252 -4.7167 17 1 3.7041 -2.0096 -5.5013 18 6 4.6887 -3.6038 -4.3745 19 6 4.6474 -4.6716 -5.4946 20 6 3.1897 -4.6396 -5.9934 21 8 2.4832 -3.6815 -5.1876 22 6 2.1565 -2.6848 -2.5794 23 6 1.6986 -2.0341 -1.4489 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9039 -0.5274 4.4375 28 1 3.0877 0.9953 -1.9697 29 1 3.9088 -0.1658 -3.9799 30 1 4.5765 -4.0648 -3.3932 31 1 5.6087 -3.0216 -4.4258 32 1 5.3321 -4.4063 -6.3001 33 1 4.8941 -5.6547 -5.0937 34 1 3.1626 -4.3356 -7.0398 35 1 2.7382 -5.6255 -5.8822 36 1 1.8928 -3.7178 -2.7519 37 1 1.0777 -2.5589 -0.7380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:11 Heat of formation + Delta-G solvation = -47.941473 kcal Electronic energy + Delta-G solvation = -17453.054436 eV Core-core repulsion = 14773.002918 eV Total energy + Delta-G solvation = -2680.051518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92270 -39.59787 -36.39370 -33.92375 -32.98045 -31.79685 -31.61080 -28.47570 -27.08702 -24.75569 -23.70591 -22.53638 -22.17418 -21.01261 -18.70916 -17.86847 -17.30985 -16.95440 -16.30244 -15.97084 -15.57158 -15.18412 -14.74173 -14.62832 -14.37810 -14.16021 -13.99082 -13.85779 -13.43312 -12.89868 -12.66254 -12.62892 -12.38337 -12.25487 -12.04763 -11.81276 -11.64529 -11.54118 -11.18482 -11.12176 -10.73919 -10.62678 -9.70027 -9.25229 -8.29111 -6.33319 0.53552 0.62237 1.31856 1.36725 1.47822 2.32893 2.80961 3.05648 3.14531 3.63654 3.84997 4.01529 4.05608 4.14761 4.24647 4.27389 4.32883 4.44798 4.58127 4.69462 4.71769 4.77987 4.85104 4.88736 4.91961 4.97489 5.09901 5.11863 5.23018 5.24860 5.27637 5.47819 5.60992 5.66562 5.67555 6.03557 6.06318 6.20204 6.34876 6.72661 7.31131 8.87629 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.045743 B = 0.004882 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.974337 B = 5733.475357 C = 5870.708263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 H 0.036 0.964 4 C -0.508 4.508 5 H 0.030 0.970 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.245 1.245 12 C -0.054 4.054 13 C -0.137 4.137 14 C -0.105 4.105 15 C -0.109 4.109 16 C 0.123 3.877 17 H 0.095 0.905 18 C -0.147 4.147 19 C -0.148 4.148 20 C 0.038 3.962 21 O -0.398 6.398 22 C -0.103 4.103 23 C -0.127 4.127 24 H 0.034 0.966 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.266 0.734 28 H 0.131 0.869 29 H 0.152 0.848 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -2.863 -20.342 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.018 3.982 3 H 0.054 0.946 4 C -0.546 4.546 5 H 0.049 0.951 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.779 3.221 9 H -0.194 1.194 10 H -0.227 1.227 11 H -0.168 1.168 12 C -0.054 4.054 13 C -0.155 4.155 14 C -0.123 4.123 15 C -0.109 4.109 16 C 0.066 3.934 17 H 0.113 0.887 18 C -0.185 4.185 19 C -0.186 4.186 20 C -0.039 4.039 21 O -0.318 6.318 22 C -0.121 4.121 23 C -0.145 4.145 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.149 0.851 29 H 0.169 0.831 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.215 -2.879 -20.131 20.588 hybrid contribution -0.320 0.230 1.048 1.120 sum 2.895 -2.649 -19.082 19.482 Atomic orbital electron populations 1.22079 0.96948 1.01112 0.99615 1.18273 0.93194 0.95701 0.91039 0.94568 1.21185 1.30905 1.12214 0.90267 0.95136 1.25875 0.97292 1.00068 0.95269 1.70042 1.47793 1.42638 0.98608 0.85798 0.78990 0.79965 0.77364 1.19361 1.22653 1.16831 1.20147 0.95901 0.94423 0.94942 1.21236 0.98819 1.00675 0.94763 1.21097 1.00028 0.93455 0.97693 1.19726 1.00188 0.94554 0.96433 1.21964 0.87565 0.91209 0.92621 0.88686 1.23177 0.98412 0.97380 0.99482 1.22940 0.96954 1.00079 0.98593 1.23345 0.92199 0.93223 0.95096 1.88923 1.33229 1.40626 1.69049 1.20956 0.97696 0.99950 0.93524 1.21010 1.01322 0.94818 0.97334 0.94714 0.92109 0.93164 0.92527 0.85099 0.83064 0.92100 0.88504 0.88537 0.89755 0.90936 0.89376 0.86062 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 8.48 71.98 0.61 -5.42 16 2 C 0.04 1.74 2.07 -12.29 -0.03 1.72 16 3 H 0.04 1.69 6.93 -2.39 -0.02 1.68 16 4 C -0.51 -29.42 8.82 25.60 0.23 -29.20 16 5 H 0.03 1.98 7.84 -2.91 -0.02 1.96 16 6 C 0.01 0.69 5.45 84.65 0.46 1.15 16 7 N -0.95 -60.18 13.96 21.44 0.30 -59.89 16 8 Si 0.95 45.25 24.37 68.60 1.67 46.92 16 9 H -0.27 -12.14 6.87 99.48 0.68 -11.46 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 11 H -0.24 -10.67 6.53 99.48 0.65 -10.02 16 12 C -0.05 -2.30 4.74 -19.87 -0.09 -2.39 16 13 C -0.14 -4.87 9.67 22.27 0.22 -4.65 16 14 C -0.10 -3.10 9.70 22.27 0.22 -2.88 16 15 C -0.11 -3.33 5.06 -19.87 -0.10 -3.43 16 16 C 0.12 2.93 3.55 30.53 0.11 3.04 16 17 H 0.10 1.85 8.08 -2.39 -0.02 1.83 16 18 C -0.15 -2.92 6.57 31.90 0.21 -2.71 16 19 C -0.15 -2.16 7.01 31.59 0.22 -1.94 16 20 C 0.04 0.66 7.70 72.35 0.56 1.21 16 21 O -0.40 -10.37 10.41 -148.98 -1.55 -11.92 16 22 C -0.10 -3.68 9.38 22.27 0.21 -3.47 16 23 C -0.13 -5.26 8.71 22.27 0.19 -5.06 16 24 H 0.03 1.51 3.27 -2.38 -0.01 1.50 16 25 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.05 2.15 7.39 -2.38 -0.02 2.13 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.13 4.18 7.95 -2.91 -0.02 4.15 16 29 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.06 1.46 8.05 -2.39 -0.02 1.44 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 4.09 7.64 -2.91 -0.02 4.07 16 37 H 0.10 4.57 7.58 -2.91 -0.02 4.55 16 Total: -1.00 -68.51 296.11 4.39 -64.12 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.96 Total: 14.81 kcal Atomic # 6 Polarization: -57.06 SS G_CDS: 3.01 Total: -54.05 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.30 Total: -59.89 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.55 Total: -11.92 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.92 kcal Total: -68.51 4.39 -64.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.183 kcal (2) G-P(sol) polarization free energy of solvation -68.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds