Wall clock time and date at job start Mon Mar 30 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99853 * 2 1 4 4 C 1.50705 * 109.46888 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99786 * 90.00144 * 4 3 2 6 6 C 1.38207 * 120.00077 * 179.97438 * 5 4 3 7 7 C 1.38259 * 119.99911 * 0.02740 * 6 5 4 8 8 C 1.38215 * 119.99862 * 0.24931 * 7 6 5 9 9 C 1.50699 * 119.99775 * 179.72601 * 8 7 6 10 10 H 1.08995 * 109.47071 * 180.02562 * 9 8 7 11 11 C 1.50708 * 109.47147 * 300.00061 * 9 8 7 12 12 H 1.07997 * 119.99572 * 85.08217 * 11 9 8 13 13 C 1.37873 * 119.99929 * 265.08158 * 11 9 8 14 14 N 1.31509 * 119.99995 * 184.98116 * 13 11 9 15 15 Si 1.86800 * 120.00084 * 4.97715 * 13 11 9 16 16 H 1.48503 * 109.47178 * 84.71978 * 15 13 11 17 17 H 1.48504 * 109.47089 * 204.71651 * 15 13 11 18 18 H 1.48501 * 109.47393 * 324.71785 * 15 13 11 19 19 C 1.53001 * 109.47328 * 60.00143 * 9 8 7 20 20 C 1.52994 * 117.50074 * 133.79430 * 19 9 8 21 21 C 1.52996 * 117.49831 * 65.16930 * 19 9 8 22 22 C 1.38209 * 120.00024 * 269.97663 * 4 3 2 23 23 H 1.09000 * 109.46532 * 60.00267 * 1 2 3 24 24 H 1.08998 * 109.46705 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47158 * 300.00313 * 1 2 3 26 26 H 1.08997 * 109.47076 * 60.00169 * 3 2 1 27 27 H 1.08995 * 109.47657 * 299.99670 * 3 2 1 28 28 H 1.08003 * 119.99692 * 359.97438 * 5 4 3 29 29 H 1.07997 * 119.99859 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00036 * 179.97438 * 7 6 5 31 31 H 0.97003 * 120.00332 * 180.02562 * 14 13 11 32 32 H 1.09001 * 115.55013 * 279.50213 * 19 9 8 33 33 H 1.09001 * 117.50184 * 359.97438 * 20 19 9 34 34 H 1.09001 * 117.49999 * 145.02371 * 20 19 9 35 35 H 1.09001 * 117.49613 * 214.98153 * 21 19 9 36 36 H 1.08997 * 117.50004 * 359.97438 * 21 19 9 37 37 H 1.08000 * 120.00379 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2022 1.1316 -1.1965 6 6 5.5800 1.0230 -1.1960 7 6 6.2687 0.9686 0.0017 8 6 5.5788 1.0176 1.1983 9 6 6.3290 0.9520 2.5037 10 1 5.6223 1.0036 3.3319 11 6 7.0955 -0.3435 2.5780 12 1 8.0760 -0.4170 2.1314 13 6 6.5450 -1.4345 3.2163 14 7 7.2514 -2.5335 3.3673 15 14 4.7959 -1.3517 3.8668 16 1 3.8455 -1.6828 2.7748 17 1 4.6337 -2.3255 4.9762 18 1 4.5179 0.0188 4.3665 19 6 7.3045 2.1275 2.5910 20 6 7.3450 2.9160 3.9014 21 6 6.7098 3.5357 2.6551 22 6 4.2010 1.1325 1.1979 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.6641 1.1737 -2.1320 29 1 6.1186 0.9798 -2.1311 30 1 7.3453 0.8833 0.0021 31 1 6.8640 -3.3013 3.8160 32 1 8.2423 2.0014 2.0499 33 1 6.6765 2.5977 4.7013 34 1 8.3096 3.3088 4.2228 35 1 7.2565 4.3361 2.1565 36 1 5.6236 3.6247 2.6346 37 1 3.6624 1.1753 2.1330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259999195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:25 Heat of formation + Delta-G solvation = -4.348857 kcal Electronic energy + Delta-G solvation = -17763.660830 eV Core-core repulsion = 15085.499630 eV Total energy + Delta-G solvation = -2678.161200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13107 -37.60002 -36.48794 -33.03594 -31.60655 -30.92490 -27.82917 -26.93036 -25.04539 -23.28623 -21.74156 -21.41552 -21.00787 -18.70112 -16.93012 -16.31132 -16.04435 -15.71059 -15.07773 -14.92369 -14.28155 -14.12604 -13.55807 -13.34751 -12.62098 -12.22730 -12.20002 -12.10767 -12.09304 -11.46125 -11.32423 -10.95013 -10.86632 -10.55505 -10.44863 -10.41276 -9.82330 -9.61220 -9.53336 -9.14105 -8.98354 -8.56032 -8.18372 -7.77111 -6.10619 -4.09590 1.94336 2.15511 3.30854 3.36384 3.43149 3.98100 4.41237 4.56140 4.64826 5.11931 5.15439 5.24887 5.34682 5.38580 5.44999 5.50992 5.64103 5.66350 5.67086 5.73562 5.74334 6.01881 6.17919 6.20417 6.28576 6.40461 6.51664 6.67427 6.71638 6.81777 6.87207 7.12764 7.16497 7.22871 7.28662 7.56222 7.68904 7.77236 8.47857 8.92794 9.51353 11.01831 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.009132 C = 0.007394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.447616 B = 3065.300511 C = 3786.020871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.107 3.893 4 C -0.100 4.100 5 C -0.127 4.127 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.031 4.031 9 C 0.062 3.938 10 H 0.049 0.951 11 C -0.498 4.498 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.895 5.895 15 Si 0.864 3.136 16 H -0.266 1.266 17 H -0.289 1.289 18 H -0.263 1.263 19 C -0.106 4.106 20 C -0.182 4.182 21 C -0.199 4.199 22 C -0.119 4.119 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.265 0.735 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.928 9.642 -5.742 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.302 6.302 3 C 0.031 3.969 4 C -0.100 4.100 5 C -0.145 4.145 6 C -0.146 4.146 7 C -0.110 4.110 8 C -0.031 4.031 9 C 0.043 3.957 10 H 0.067 0.933 11 C -0.536 4.536 12 H 0.095 0.905 13 C -0.126 4.126 14 N -0.532 5.532 15 Si 0.691 3.309 16 H -0.191 1.191 17 H -0.215 1.215 18 H -0.189 1.189 19 C -0.124 4.124 20 C -0.219 4.219 21 C -0.236 4.236 22 C -0.137 4.137 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.817 9.268 -5.659 13.988 hybrid contribution -1.190 -0.014 0.363 1.244 sum -10.007 9.254 -5.296 14.623 Atomic orbital electron populations 1.22729 0.81738 1.02588 0.99602 1.88058 1.18964 1.27867 1.95274 1.21330 0.90848 0.84671 1.00012 1.19368 0.92929 1.03794 0.93929 1.20698 0.94332 1.03009 0.96454 1.21031 0.94030 1.01641 0.97869 1.20975 1.00130 0.98402 0.91537 1.20675 0.92745 0.92153 0.97545 1.18124 0.93289 0.93940 0.90336 0.93268 1.20822 1.03614 0.93123 1.36000 0.90471 1.24999 0.97123 0.95334 0.95102 1.69882 1.36688 1.03836 1.42810 0.87074 0.86403 0.77982 0.79428 1.19053 1.21541 1.18879 1.22329 1.00552 0.90641 0.98887 1.22850 1.01614 1.05281 0.92146 1.22913 0.99904 0.97868 1.02899 1.20899 0.94451 1.01824 0.96532 0.94331 0.89792 0.94274 0.92975 0.92961 0.87265 0.86900 0.86205 0.92536 0.88622 0.89491 0.89800 0.90037 0.89710 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.38 -6.45 10.69 -35.23 -0.38 -6.82 16 3 C 0.11 1.64 6.06 36.01 0.22 1.86 16 4 C -0.10 -1.83 5.51 -104.62 -0.58 -2.41 16 5 C -0.13 -2.18 9.70 -39.58 -0.38 -2.56 16 6 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 7 C -0.09 -1.85 8.93 -39.58 -0.35 -2.21 16 8 C -0.03 -0.66 4.35 -104.62 -0.46 -1.12 16 9 C 0.06 1.43 1.67 -92.92 -0.15 1.27 16 10 H 0.05 1.18 4.68 -51.93 -0.24 0.93 16 11 C -0.50 -13.62 8.48 -34.44 -0.29 -13.91 16 12 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 15 Si 0.86 21.86 26.70 -169.99 -4.54 17.32 16 16 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.26 -6.27 6.06 56.52 0.34 -5.93 16 19 C -0.11 -2.10 4.70 -90.62 -0.43 -2.53 16 20 C -0.18 -3.22 10.18 -26.73 -0.27 -3.49 16 21 C -0.20 -3.34 10.01 -26.73 -0.27 -3.61 16 22 C -0.12 -2.44 8.75 -39.58 -0.35 -2.78 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.12 2.36 8.05 -52.49 -0.42 1.94 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 33 H 0.09 1.57 8.08 -51.93 -0.42 1.15 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.11 2.17 7.80 -52.49 -0.41 1.76 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -30.80 310.74 -7.91 -38.70 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.76 Total: 3.15 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -2.69 Total: -30.55 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.38 Total: -6.82 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.54 Total: 17.32 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.80 -7.91 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.356 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds