Wall clock time and date at job start Mon Mar 30 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99853 * 2 1 4 4 C 1.50705 * 109.46888 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99786 * 90.00144 * 4 3 2 6 6 C 1.38207 * 120.00077 * 179.97438 * 5 4 3 7 7 C 1.38259 * 119.99911 * 0.02740 * 6 5 4 8 8 C 1.38215 * 119.99862 * 0.24931 * 7 6 5 9 9 C 1.50699 * 119.99775 * 179.72601 * 8 7 6 10 10 H 1.08995 * 109.47071 * 180.02562 * 9 8 7 11 11 C 1.50708 * 109.47147 * 300.00061 * 9 8 7 12 12 H 1.07997 * 119.99572 * 85.08217 * 11 9 8 13 13 C 1.37873 * 119.99929 * 265.08158 * 11 9 8 14 14 N 1.31509 * 119.99995 * 184.98116 * 13 11 9 15 15 Si 1.86800 * 120.00084 * 4.97715 * 13 11 9 16 16 H 1.48503 * 109.47178 * 84.71978 * 15 13 11 17 17 H 1.48504 * 109.47089 * 204.71651 * 15 13 11 18 18 H 1.48501 * 109.47393 * 324.71785 * 15 13 11 19 19 C 1.53001 * 109.47328 * 60.00143 * 9 8 7 20 20 C 1.52994 * 117.50074 * 133.79430 * 19 9 8 21 21 C 1.52996 * 117.49831 * 65.16930 * 19 9 8 22 22 C 1.38209 * 120.00024 * 269.97663 * 4 3 2 23 23 H 1.09000 * 109.46532 * 60.00267 * 1 2 3 24 24 H 1.08998 * 109.46705 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47158 * 300.00313 * 1 2 3 26 26 H 1.08997 * 109.47076 * 60.00169 * 3 2 1 27 27 H 1.08995 * 109.47657 * 299.99670 * 3 2 1 28 28 H 1.08003 * 119.99692 * 359.97438 * 5 4 3 29 29 H 1.07997 * 119.99859 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00036 * 179.97438 * 7 6 5 31 31 H 0.97003 * 120.00332 * 180.02562 * 14 13 11 32 32 H 1.09001 * 115.55013 * 279.50213 * 19 9 8 33 33 H 1.09001 * 117.50184 * 359.97438 * 20 19 9 34 34 H 1.09001 * 117.49999 * 145.02371 * 20 19 9 35 35 H 1.09001 * 117.49613 * 214.98153 * 21 19 9 36 36 H 1.08997 * 117.50004 * 359.97438 * 21 19 9 37 37 H 1.08000 * 120.00379 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2022 1.1316 -1.1965 6 6 5.5800 1.0230 -1.1960 7 6 6.2687 0.9686 0.0017 8 6 5.5788 1.0176 1.1983 9 6 6.3290 0.9520 2.5037 10 1 5.6223 1.0036 3.3319 11 6 7.0955 -0.3435 2.5780 12 1 8.0760 -0.4170 2.1314 13 6 6.5450 -1.4345 3.2163 14 7 7.2514 -2.5335 3.3673 15 14 4.7959 -1.3517 3.8668 16 1 3.8455 -1.6828 2.7748 17 1 4.6337 -2.3255 4.9762 18 1 4.5179 0.0188 4.3665 19 6 7.3045 2.1275 2.5910 20 6 7.3450 2.9160 3.9014 21 6 6.7098 3.5357 2.6551 22 6 4.2010 1.1325 1.1979 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.6641 1.1737 -2.1320 29 1 6.1186 0.9798 -2.1311 30 1 7.3453 0.8833 0.0021 31 1 6.8640 -3.3013 3.8160 32 1 8.2423 2.0014 2.0499 33 1 6.6765 2.5977 4.7013 34 1 8.3096 3.3088 4.2228 35 1 7.2565 4.3361 2.1565 36 1 5.6236 3.6247 2.6346 37 1 3.6624 1.1753 2.1330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259999195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:24 Heat of formation + Delta-G solvation = -21.782075 kcal Electronic energy + Delta-G solvation = -17764.416791 eV Core-core repulsion = 15085.499630 eV Total energy + Delta-G solvation = -2678.917161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58009 -38.85239 -37.89183 -34.97979 -33.23446 -32.42423 -29.53859 -28.05251 -26.19206 -25.20750 -23.15048 -22.84498 -22.48055 -20.30283 -19.00816 -17.54102 -17.29028 -16.85833 -16.73842 -16.41208 -15.72841 -15.66650 -15.03098 -14.90881 -14.47875 -13.90199 -13.61894 -13.47651 -13.26054 -13.11590 -12.84107 -12.44630 -12.27743 -12.17320 -11.97256 -11.88747 -11.76404 -11.28115 -10.90038 -10.76814 -10.66650 -10.47477 -9.64165 -9.30968 -8.31907 -6.32460 0.49531 0.68256 1.25811 1.34609 1.35688 2.29759 2.75558 2.98467 3.20824 3.33698 3.88544 3.99347 4.08474 4.19266 4.24034 4.30920 4.36725 4.42050 4.48238 4.52576 4.55525 4.71509 4.80626 4.82572 4.84502 4.93779 5.00417 5.17492 5.30092 5.33263 5.36578 5.53180 5.60801 5.70116 5.76228 5.97026 6.22403 6.27719 6.34977 6.72515 7.30928 8.84459 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.009132 C = 0.007394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.447616 B = 3065.300511 C = 3786.020871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.420 6.420 3 C 0.107 3.893 4 C -0.105 4.105 5 C -0.122 4.122 6 C -0.123 4.123 7 C -0.114 4.114 8 C -0.052 4.052 9 C 0.067 3.933 10 H 0.039 0.961 11 C -0.490 4.490 12 H 0.040 0.960 13 C 0.020 3.980 14 N -0.945 5.945 15 Si 0.920 3.080 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.241 1.241 19 C -0.137 4.137 20 C -0.180 4.180 21 C -0.169 4.169 22 C -0.137 4.137 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.109 0.891 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 11.758 -6.980 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.341 6.341 3 C 0.031 3.969 4 C -0.105 4.105 5 C -0.140 4.140 6 C -0.141 4.141 7 C -0.132 4.132 8 C -0.053 4.053 9 C 0.048 3.952 10 H 0.057 0.943 11 C -0.528 4.528 12 H 0.058 0.942 13 C -0.178 4.178 14 N -0.586 5.586 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.214 1.214 18 H -0.165 1.165 19 C -0.155 4.155 20 C -0.217 4.217 21 C -0.205 4.205 22 C -0.155 4.155 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.115 11.419 -6.896 17.364 hybrid contribution -0.458 -0.623 0.626 0.995 sum -11.573 10.796 -6.269 17.023 Atomic orbital electron populations 1.22959 0.79303 1.03682 1.01273 1.87985 1.21717 1.28731 1.95630 1.21408 0.88711 0.84669 1.02085 1.19786 0.95026 1.02258 0.93401 1.21138 0.94191 1.01078 0.97576 1.21376 0.94667 0.99973 0.98042 1.21036 0.99917 0.99813 0.92409 1.20488 0.93399 0.94431 0.96976 1.17955 0.93265 0.92824 0.91126 0.94277 1.21081 1.02458 0.95099 1.34121 0.94155 1.25739 1.00793 0.95149 0.96108 1.70018 1.38576 1.04828 1.45138 0.86166 0.81682 0.79065 0.78576 1.19858 1.21350 1.16473 1.22144 1.00199 0.91697 1.01509 1.22967 1.02720 1.04410 0.91591 1.22941 1.00233 0.95940 1.01428 1.20983 0.93994 1.02965 0.97587 0.92005 0.89130 0.93192 0.91968 0.89829 0.83765 0.83813 0.87253 0.92661 0.89460 0.90004 0.87817 0.87478 0.89453 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -13.00 10.69 -148.98 -1.59 -14.59 16 3 C 0.11 2.91 6.06 71.24 0.43 3.34 16 4 C -0.10 -3.56 5.51 -19.86 -0.11 -3.67 16 5 C -0.12 -3.78 9.70 22.27 0.22 -3.56 16 6 C -0.12 -4.05 10.05 22.27 0.22 -3.82 16 7 C -0.11 -4.54 8.93 22.27 0.20 -4.34 16 8 C -0.05 -2.26 4.35 -19.87 -0.09 -2.35 16 9 C 0.07 3.13 1.67 -12.28 -0.02 3.11 16 10 H 0.04 1.87 4.68 -2.39 -0.01 1.86 16 11 C -0.49 -27.90 8.48 25.60 0.22 -27.69 16 12 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 13 C 0.02 1.16 5.47 84.65 0.46 1.62 16 14 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 15 Si 0.92 46.15 26.70 68.60 1.83 47.98 16 16 H -0.27 -13.94 7.11 99.48 0.71 -13.23 16 17 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 18 H -0.24 -11.04 6.06 99.48 0.60 -10.43 16 19 C -0.14 -5.46 4.70 -10.80 -0.05 -5.51 16 20 C -0.18 -6.12 10.18 30.59 0.31 -5.81 16 21 C -0.17 -5.32 10.01 30.59 0.31 -5.01 16 22 C -0.14 -5.47 8.75 22.27 0.19 -5.27 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 27 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 28 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.11 4.47 8.05 -2.91 -0.02 4.44 16 31 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 34 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.10 4.09 7.80 -2.91 -0.02 4.07 16 Total: -1.00 -68.95 310.74 5.01 -63.95 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.92 Total: 19.68 kcal Atomic # 6 Polarization: -60.78 SS G_CDS: 3.54 Total: -57.24 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.30 Total: -59.77 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -1.59 Total: -14.59 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.83 Total: 47.98 kcal Total: -68.95 5.01 -63.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.164 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds