Wall clock time and date at job start Mon Mar 30 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 C 1.50695 * 109.47018 * 240.00100 * 2 1 3 5 5 H 1.07998 * 120.00174 * 123.72257 * 4 2 1 6 6 C 1.37885 * 120.00314 * 303.72328 * 4 2 1 7 7 N 1.31518 * 120.00191 * 182.83887 * 6 4 2 8 8 Si 1.86796 * 119.99712 * 2.84124 * 6 4 2 9 9 H 1.48498 * 109.47212 * 93.93700 * 8 6 4 10 10 H 1.48493 * 109.47212 * 213.93783 * 8 6 4 11 11 H 1.48503 * 109.47514 * 333.93986 * 8 6 4 12 12 C 1.50705 * 109.47164 * 120.00077 * 2 1 3 13 13 C 1.38166 * 120.02425 * 125.46619 * 12 2 1 14 14 C 1.38249 * 120.05144 * 180.29714 * 13 12 2 15 15 C 1.38281 * 120.11126 * 359.68339 * 14 13 12 16 16 C 1.38125 * 120.05959 * 359.97438 * 15 14 13 17 17 C 1.38703 * 120.02867 * 305.14984 * 12 2 1 18 18 O 1.35901 * 120.05534 * 359.97438 * 17 12 2 19 19 C 1.42905 * 116.99769 * 174.10264 * 18 17 12 20 20 C 1.53003 * 117.49450 * 225.27801 * 19 18 17 21 21 C 1.52997 * 117.49695 * 156.62255 * 19 18 17 22 22 H 1.08998 * 109.46834 * 295.59007 * 1 2 3 23 23 H 1.08998 * 109.47177 * 55.59755 * 1 2 3 24 24 H 1.09000 * 109.46762 * 175.59351 * 1 2 3 25 25 H 1.09003 * 109.46949 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47367 * 300.00097 * 3 2 1 27 27 H 1.09004 * 109.47202 * 60.00184 * 3 2 1 28 28 H 0.96995 * 119.99700 * 179.97438 * 7 6 4 29 29 H 1.07993 * 119.97774 * 359.97438 * 13 12 2 30 30 H 1.08004 * 119.94508 * 179.70006 * 14 13 12 31 31 H 1.07999 * 119.97507 * 180.02562 * 15 14 13 32 32 H 1.07996 * 120.03527 * 179.97438 * 16 15 14 33 33 H 1.08993 * 115.55394 * 10.94792 * 19 18 17 34 34 H 1.09004 * 117.50168 * 0.02562 * 20 19 18 35 35 H 1.09000 * 117.49810 * 145.02086 * 20 19 18 36 36 H 1.09003 * 117.49764 * 214.97564 * 21 19 18 37 37 H 1.09006 * 117.50312 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.7019 -0.2047 -1.9104 6 6 1.6371 -2.0060 -1.4882 7 7 2.1190 -2.6452 -2.5317 8 14 0.4173 -2.8532 -0.3553 9 1 -0.9574 -2.6796 -0.8895 10 1 0.7383 -4.3008 -0.2760 11 1 0.5010 -2.2526 1.0003 12 6 2.0324 -0.7104 1.2305 13 6 2.9172 -1.7644 1.1074 14 6 3.3737 -2.4205 2.2355 15 6 2.9512 -2.0197 3.4897 16 6 2.0722 -0.9621 3.6185 17 6 1.6120 -0.3026 2.4878 18 8 0.7471 0.7383 2.6117 19 6 0.2562 1.0212 3.9237 20 6 -1.2430 1.2872 4.0748 21 6 -0.2442 2.4404 4.2000 22 1 -0.3633 0.4439 0.9269 23 1 -0.3633 0.5806 -0.8479 24 1 -0.3633 -1.0246 -0.0790 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.8412 -3.5567 -2.7128 29 1 3.2486 -2.0794 0.1290 30 1 4.0616 -3.2473 2.1370 31 1 3.3095 -2.5336 4.3695 32 1 1.7422 -0.6497 4.5982 33 1 0.7589 0.4976 4.7368 34 1 -1.8548 1.2461 3.1737 35 1 -1.7264 0.9389 4.9876 36 1 -0.0709 2.8503 5.1950 37 1 -0.1986 3.1585 3.3812 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:02 Heat of formation + Delta-G solvation = 37.266548 kcal Electronic energy + Delta-G solvation = -18719.447143 eV Core-core repulsion = 16043.090522 eV Total energy + Delta-G solvation = -2676.356621 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.01702 -37.76704 -35.31982 -34.93297 -31.79533 -29.61546 -28.61335 -26.39234 -25.23953 -23.17943 -22.45473 -22.00652 -20.50516 -19.07842 -17.92400 -16.50487 -15.64266 -15.05618 -14.92923 -14.53235 -14.40969 -13.63941 -13.47436 -13.04402 -12.85825 -12.49266 -12.35529 -11.80499 -11.58785 -11.53217 -11.41533 -11.03340 -10.68116 -10.57253 -10.40697 -10.16434 -9.94948 -9.75265 -9.70273 -9.13506 -8.86526 -8.49349 -7.88060 -7.29104 -6.09248 -4.08498 2.07118 2.13190 3.34446 3.41633 3.46596 3.53442 3.81740 4.43463 4.54062 4.70668 4.92562 5.08699 5.17733 5.32841 5.40972 5.55912 5.64349 5.80772 5.87515 6.07388 6.07650 6.16093 6.25976 6.42134 6.53872 6.63357 6.74753 6.81604 6.86631 6.92321 7.03930 7.15840 7.21276 7.36457 7.54376 7.65018 7.92450 8.05678 8.55499 8.96093 9.53886 11.01979 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.010170 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.163515 B = 2752.438984 C = 3163.364684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 C -0.116 4.116 4 C -0.509 4.509 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.290 1.290 10 H -0.303 1.303 11 H -0.241 1.241 12 C -0.061 4.061 13 C -0.073 4.073 14 C -0.166 4.166 15 C -0.108 4.108 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.268 6.268 19 C 0.002 3.998 20 C -0.189 4.189 21 C -0.174 4.174 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.156 0.844 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.738 5.277 13.859 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.072 3.928 3 C -0.174 4.174 4 C -0.546 4.546 5 H 0.095 0.905 6 C -0.126 4.126 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.218 1.218 10 H -0.231 1.231 11 H -0.165 1.165 12 C -0.062 4.062 13 C -0.090 4.090 14 C -0.184 4.184 15 C -0.126 4.126 16 C -0.238 4.238 17 C 0.066 3.934 18 O -0.182 6.182 19 C -0.055 4.055 20 C -0.227 4.227 21 C -0.211 4.211 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.173 0.827 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.799 5.246 13.594 14.838 hybrid contribution -0.744 -0.824 0.728 1.328 sum -3.543 4.423 14.322 15.403 Atomic orbital electron populations 1.22237 0.97837 0.99355 1.00218 1.17485 0.91794 0.92722 0.90834 1.21635 0.99845 0.96214 0.99665 1.20941 1.29369 0.97996 1.06302 0.90459 1.25046 0.95493 0.97200 0.94844 1.69916 1.43648 1.12177 1.27693 0.87313 0.81158 0.77497 0.83756 1.21775 1.23111 1.16524 1.20068 0.97097 0.96446 0.92606 1.21625 0.94260 0.93181 0.99975 1.21125 1.02806 1.01679 0.92781 1.20692 0.97994 0.96824 0.97122 1.20989 1.04567 1.01144 0.97090 1.18962 0.91695 0.88651 0.94056 1.86172 1.58361 1.47040 1.26590 1.22989 0.95797 0.99716 0.87013 1.23428 0.92860 1.02668 1.03697 1.23301 1.02932 0.91784 1.03111 0.93140 0.93244 0.94929 0.93926 0.93505 0.94055 0.92640 0.82697 0.86838 0.87102 0.86503 0.86245 0.87933 0.88299 0.88107 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 7.67 37.16 0.28 -2.91 16 2 C 0.07 1.71 0.48 -156.81 -0.08 1.63 16 3 C -0.12 -2.46 8.25 37.16 0.31 -2.16 16 4 C -0.51 -13.92 7.47 -34.44 -0.26 -14.18 16 5 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 6 C 0.08 2.15 4.13 -17.82 -0.07 2.07 16 7 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 8 Si 0.87 22.35 21.95 -169.99 -3.73 18.62 16 9 H -0.29 -7.49 7.06 56.52 0.40 -7.09 16 10 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 11 H -0.24 -5.97 4.53 56.52 0.26 -5.71 16 12 C -0.06 -1.38 2.55 -104.47 -0.27 -1.65 16 13 C -0.07 -1.64 6.61 -39.60 -0.26 -1.91 16 14 C -0.17 -3.19 10.04 -39.56 -0.40 -3.59 16 15 C -0.11 -1.87 10.04 -39.61 -0.40 -2.27 16 16 C -0.22 -3.86 9.19 -39.43 -0.36 -4.22 16 17 C 0.11 2.22 6.16 -39.22 -0.24 1.97 16 18 O -0.27 -4.92 6.05 -19.43 -0.12 -5.04 16 19 C 0.00 0.03 6.20 -26.73 -0.17 -0.14 16 20 C -0.19 -2.25 10.48 -26.69 -0.28 -2.53 16 21 C -0.17 -1.96 10.48 -26.70 -0.28 -2.24 16 22 H 0.05 1.06 5.61 -51.93 -0.29 0.77 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.79 2.62 -51.93 -0.14 0.65 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.81 6.57 -51.93 -0.34 0.47 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.16 3.86 5.45 -52.49 -0.29 3.58 16 30 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.12 1.68 5.52 -52.49 -0.29 1.39 16 33 H 0.12 1.49 5.34 -51.93 -0.28 1.21 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 280.94 15.07 4.23 4.23 Total: -1.00 -30.17 280.94 -6.44 -36.61 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.13 Total: 3.79 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -2.47 Total: -32.11 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.77 Total: -26.10 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.12 Total: -5.04 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -3.73 Total: 18.62 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.17 -6.44 -36.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.874 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds