Wall clock time and date at job start Mon Mar 30 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 C 1.50695 * 109.47018 * 240.00100 * 2 1 3 5 5 H 1.07998 * 120.00174 * 123.72257 * 4 2 1 6 6 C 1.37885 * 120.00314 * 303.72328 * 4 2 1 7 7 N 1.31518 * 120.00191 * 182.83887 * 6 4 2 8 8 Si 1.86796 * 119.99712 * 2.84124 * 6 4 2 9 9 H 1.48498 * 109.47212 * 93.93700 * 8 6 4 10 10 H 1.48493 * 109.47212 * 213.93783 * 8 6 4 11 11 H 1.48503 * 109.47514 * 333.93986 * 8 6 4 12 12 C 1.50705 * 109.47164 * 120.00077 * 2 1 3 13 13 C 1.38166 * 120.02425 * 125.46619 * 12 2 1 14 14 C 1.38249 * 120.05144 * 180.29714 * 13 12 2 15 15 C 1.38281 * 120.11126 * 359.68339 * 14 13 12 16 16 C 1.38125 * 120.05959 * 359.97438 * 15 14 13 17 17 C 1.38703 * 120.02867 * 305.14984 * 12 2 1 18 18 O 1.35901 * 120.05534 * 359.97438 * 17 12 2 19 19 C 1.42905 * 116.99769 * 174.10264 * 18 17 12 20 20 C 1.53003 * 117.49450 * 225.27801 * 19 18 17 21 21 C 1.52997 * 117.49695 * 156.62255 * 19 18 17 22 22 H 1.08998 * 109.46834 * 295.59007 * 1 2 3 23 23 H 1.08998 * 109.47177 * 55.59755 * 1 2 3 24 24 H 1.09000 * 109.46762 * 175.59351 * 1 2 3 25 25 H 1.09003 * 109.46949 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47367 * 300.00097 * 3 2 1 27 27 H 1.09004 * 109.47202 * 60.00184 * 3 2 1 28 28 H 0.96995 * 119.99700 * 179.97438 * 7 6 4 29 29 H 1.07993 * 119.97774 * 359.97438 * 13 12 2 30 30 H 1.08004 * 119.94508 * 179.70006 * 14 13 12 31 31 H 1.07999 * 119.97507 * 180.02562 * 15 14 13 32 32 H 1.07996 * 120.03527 * 179.97438 * 16 15 14 33 33 H 1.08993 * 115.55394 * 10.94792 * 19 18 17 34 34 H 1.09004 * 117.50168 * 0.02562 * 20 19 18 35 35 H 1.09000 * 117.49810 * 145.02086 * 20 19 18 36 36 H 1.09003 * 117.49764 * 214.97564 * 21 19 18 37 37 H 1.09006 * 117.50312 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.7019 -0.2047 -1.9104 6 6 1.6371 -2.0060 -1.4882 7 7 2.1190 -2.6452 -2.5317 8 14 0.4173 -2.8532 -0.3553 9 1 -0.9574 -2.6796 -0.8895 10 1 0.7383 -4.3008 -0.2760 11 1 0.5010 -2.2526 1.0003 12 6 2.0324 -0.7104 1.2305 13 6 2.9172 -1.7644 1.1074 14 6 3.3737 -2.4205 2.2355 15 6 2.9512 -2.0197 3.4897 16 6 2.0722 -0.9621 3.6185 17 6 1.6120 -0.3026 2.4878 18 8 0.7471 0.7383 2.6117 19 6 0.2562 1.0212 3.9237 20 6 -1.2430 1.2872 4.0748 21 6 -0.2442 2.4404 4.2000 22 1 -0.3633 0.4439 0.9269 23 1 -0.3633 0.5806 -0.8479 24 1 -0.3633 -1.0246 -0.0790 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.8412 -3.5567 -2.7128 29 1 3.2486 -2.0794 0.1290 30 1 4.0616 -3.2473 2.1370 31 1 3.3095 -2.5336 4.3695 32 1 1.7422 -0.6497 4.5982 33 1 0.7589 0.4976 4.7368 34 1 -1.8548 1.2461 3.1737 35 1 -1.7264 0.9389 4.9876 36 1 -0.0709 2.8503 5.1950 37 1 -0.1986 3.1585 3.3812 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:02 Heat of formation + Delta-G solvation = 19.274556 kcal Electronic energy + Delta-G solvation = -18720.227334 eV Core-core repulsion = 16043.090522 eV Total energy + Delta-G solvation = -2677.136812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44120 -39.07602 -37.03108 -36.05376 -33.91893 -31.11692 -30.10836 -28.19290 -27.26474 -24.49290 -23.56420 -23.28588 -21.81269 -20.83710 -19.38410 -18.31214 -17.23859 -16.59288 -16.34258 -15.98508 -15.73697 -15.02848 -14.94827 -14.79792 -14.59953 -14.28451 -14.14120 -13.40456 -13.01895 -12.95012 -12.70417 -12.40278 -12.38648 -12.13457 -12.04891 -11.95786 -11.53641 -11.31758 -11.02434 -10.87644 -10.75528 -10.63525 -9.41851 -8.76708 -8.31053 -6.31644 0.56718 0.64943 1.28558 1.37003 1.47848 2.24032 2.31758 2.84456 3.05106 3.08414 3.71217 4.01554 4.03961 4.11633 4.22400 4.32754 4.34357 4.47213 4.60739 4.67523 4.76183 4.79135 4.90143 4.98541 5.02162 5.05611 5.10975 5.17118 5.24497 5.30692 5.46432 5.50050 5.55776 5.68905 5.78094 5.98247 6.17139 6.36854 6.70359 6.76815 7.33822 8.84358 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.010170 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.163515 B = 2752.438984 C = 3163.364684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 C -0.109 4.109 4 C -0.503 4.503 5 H 0.037 0.963 6 C 0.036 3.964 7 N -0.944 5.944 8 Si 0.925 3.075 9 H -0.294 1.294 10 H -0.310 1.310 11 H -0.222 1.222 12 C -0.094 4.094 13 C -0.101 4.101 14 C -0.174 4.174 15 C -0.094 4.094 16 C -0.213 4.213 17 C 0.110 3.890 18 O -0.288 6.288 19 C -0.030 4.030 20 C -0.184 4.184 21 C -0.158 4.158 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.019 0.981 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.263 0.737 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 5.923 18.172 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.068 3.932 3 C -0.166 4.166 4 C -0.541 4.541 5 H 0.055 0.945 6 C -0.161 4.161 7 N -0.584 5.584 8 Si 0.756 3.244 9 H -0.222 1.222 10 H -0.239 1.239 11 H -0.145 1.145 12 C -0.095 4.095 13 C -0.119 4.119 14 C -0.193 4.193 15 C -0.112 4.112 16 C -0.231 4.231 17 C 0.066 3.934 18 O -0.201 6.201 19 C -0.086 4.086 20 C -0.222 4.222 21 C -0.195 4.195 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.156 0.844 34 H 0.106 0.894 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.877 5.924 17.925 19.272 hybrid contribution -0.360 -0.911 -0.556 1.126 sum -4.237 5.014 17.369 18.568 Atomic orbital electron populations 1.22176 0.97183 0.98573 1.01343 1.17446 0.92303 0.93543 0.89909 1.21548 0.99295 0.95238 1.00507 1.21148 1.27911 0.98010 1.07047 0.94472 1.25591 0.96970 0.97770 0.95807 1.70037 1.45800 1.12622 1.29909 0.86451 0.78657 0.75978 0.83318 1.22200 1.23918 1.14485 1.19825 0.98945 0.97498 0.93194 1.21376 0.96089 0.94832 0.99563 1.21353 1.03115 1.01988 0.92801 1.21170 0.96441 0.96129 0.97484 1.21449 1.03450 1.00226 0.98011 1.18928 0.91784 0.89082 0.93653 1.86091 1.58033 1.46331 1.29686 1.23455 0.97353 1.02239 0.85544 1.23526 0.91675 1.02668 1.04283 1.23423 1.01156 0.90541 1.04390 0.90993 0.93323 0.96300 0.94717 0.93623 0.92094 0.92747 0.86617 0.85108 0.82734 0.82564 0.84373 0.89364 0.85666 0.85090 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.16 7.67 71.98 0.55 -5.60 16 2 C 0.07 3.28 0.48 -53.67 -0.03 3.25 16 3 C -0.11 -4.63 8.25 71.98 0.59 -4.04 16 4 C -0.50 -28.92 7.47 25.60 0.19 -28.73 16 5 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 6 C 0.04 2.13 4.13 84.66 0.35 2.48 16 7 N -0.94 -59.47 13.96 21.45 0.30 -59.17 16 8 Si 0.93 47.45 21.95 68.60 1.51 48.96 16 9 H -0.29 -15.01 7.06 99.48 0.70 -14.31 16 10 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 11 H -0.22 -10.66 4.53 99.48 0.45 -10.21 16 12 C -0.09 -4.16 2.55 -19.77 -0.05 -4.21 16 13 C -0.10 -4.56 6.61 22.26 0.15 -4.42 16 14 C -0.17 -6.38 10.04 22.28 0.22 -6.16 16 15 C -0.09 -2.83 10.04 22.25 0.22 -2.61 16 16 C -0.21 -6.50 9.19 22.37 0.21 -6.30 16 17 C 0.11 4.11 6.16 22.51 0.14 4.25 16 18 O -0.29 -9.67 6.05 -92.44 -0.56 -10.23 16 19 C -0.03 -0.71 6.20 30.59 0.19 -0.52 16 20 C -0.18 -3.61 10.48 30.62 0.32 -3.28 16 21 C -0.16 -2.87 10.48 30.62 0.32 -2.55 16 22 H 0.07 2.91 5.61 -2.39 -0.01 2.90 16 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.02 0.89 2.62 -2.39 -0.01 0.89 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 2.32 6.57 -2.39 -0.02 2.31 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.12 6.09 5.45 -2.91 -0.02 6.07 16 30 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 31 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.16 3.48 5.52 -2.91 -0.02 3.46 16 33 H 0.14 2.65 5.34 -2.39 -0.01 2.64 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -68.51 280.94 5.43 -63.08 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.80 Total: 15.80 kcal Atomic # 6 Polarization: -61.82 SS G_CDS: 3.38 Total: -58.44 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.30 Total: -59.17 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.56 Total: -10.23 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.51 Total: 48.96 kcal Total: -68.51 5.43 -63.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.358 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds