Wall clock time and date at job start Mon Mar 30 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99481 * 2 1 4 4 H 1.48497 * 109.47277 * 270.00268 * 3 2 1 5 5 H 1.48499 * 109.47264 * 30.00938 * 3 2 1 6 6 H 1.48501 * 109.46914 * 150.00596 * 3 2 1 7 7 C 1.37878 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99383 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00137 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.81313 * 60.52248 * 9 7 2 11 11 C 1.53383 * 109.64110 * 299.99918 * 9 7 2 12 12 C 1.53120 * 109.45680 * 190.64525 * 11 9 7 13 13 C 1.53365 * 109.47677 * 70.05188 * 12 11 9 14 14 C 1.50841 * 108.43347 * 309.97656 * 13 12 11 15 15 N 1.33736 * 127.90815 * 196.84067 * 14 13 12 16 16 C 1.30335 * 109.05991 * 179.71740 * 15 14 13 17 17 N 1.35639 * 108.75879 * 0.12076 * 16 15 14 18 18 C 1.35177 * 124.01572 * 16.68051 * 14 13 12 19 19 C 1.46498 * 124.66960 * 179.97438 * 17 16 15 20 20 C 1.53241 * 108.86844 * 342.87229 * 19 17 16 21 21 C 1.53156 * 109.49626 * 50.43982 * 20 19 17 22 22 C 1.50990 * 127.22486 * 180.20803 * 16 15 14 23 23 H 0.96993 * 120.00463 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47533 * 310.64440 * 11 9 7 25 25 H 1.09005 * 109.47455 * 70.65468 * 11 9 7 26 26 H 1.08991 * 109.46967 * 190.04738 * 12 11 9 27 27 H 1.08997 * 109.46862 * 310.04581 * 12 11 9 28 28 H 1.08997 * 109.62665 * 190.30818 * 13 12 11 29 29 H 1.09001 * 109.84455 * 69.77048 * 13 12 11 30 30 H 1.08998 * 109.57146 * 102.70509 * 19 17 16 31 31 H 1.08999 * 109.56909 * 223.07326 * 19 17 16 32 32 H 1.09000 * 109.47117 * 290.43129 * 20 19 17 33 33 H 1.08993 * 109.46193 * 170.44476 * 20 19 17 34 34 H 1.09007 * 109.51812 * 170.56173 * 21 20 19 35 35 H 1.09001 * 109.52184 * 50.39005 * 21 20 19 36 36 H 1.09003 * 109.71277 * 283.60958 * 22 16 15 37 37 H 1.09009 * 109.70814 * 44.19167 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4403 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8814 -0.6895 0.8916 11 6 4.0266 -0.4713 -1.2522 12 6 5.5344 -0.7005 -1.3892 13 6 5.7972 -2.1640 -1.7649 14 6 5.0310 -3.0463 -0.8110 15 7 5.2076 -4.3510 -0.5765 16 6 4.3480 -4.7422 0.3217 17 7 3.5864 -3.6813 0.6879 18 6 4.0181 -2.6127 -0.0277 19 6 2.5087 -3.7316 1.6789 20 6 2.1055 -5.1935 1.8988 21 6 3.3565 -6.0328 2.1749 22 6 4.1904 -6.1318 0.8910 23 1 -0.4850 0.8399 0.0004 24 1 3.5180 -0.8628 -2.1332 25 1 3.8281 0.5967 -1.1626 26 1 5.9317 -0.0488 -2.1672 27 1 6.0236 -0.4751 -0.4416 28 1 6.8631 -2.3768 -1.6848 29 1 5.4621 -2.3500 -2.7853 30 1 2.8567 -3.3032 2.6189 31 1 1.6505 -3.1673 1.3140 32 1 1.6047 -5.5704 1.0071 33 1 1.4287 -5.2594 2.7506 34 1 3.0613 -7.0321 2.4952 35 1 3.9480 -5.5584 2.9579 36 1 3.6803 -6.7693 0.1689 37 1 5.1712 -6.5483 1.1207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:17 Heat of formation + Delta-G solvation = 39.482352 kcal Electronic energy + Delta-G solvation = -18615.434165 eV Core-core repulsion = 15971.466379 eV Total energy + Delta-G solvation = -2643.967785 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.77707 -36.97376 -35.45698 -33.24340 -32.31050 -30.13431 -28.80314 -27.54900 -25.41034 -23.54732 -21.90475 -21.41503 -20.74473 -18.69512 -18.04817 -17.01528 -16.01276 -15.18534 -14.55592 -14.36839 -13.91766 -13.85844 -13.72931 -13.30001 -13.01347 -12.76980 -12.64203 -11.78388 -11.76002 -11.37859 -11.18771 -11.01323 -10.91416 -10.81313 -10.69595 -10.30720 -10.24288 -10.03126 -9.64407 -9.20509 -8.94716 -8.66920 -8.56966 -7.12653 -6.21063 -4.22448 2.88103 3.21184 3.31200 3.32496 3.54729 3.78711 4.29840 4.69111 4.88968 4.90557 5.04073 5.10810 5.41711 5.57746 5.60610 5.63830 5.69624 5.84419 5.90429 5.95508 5.98210 6.06161 6.19482 6.23478 6.30993 6.33307 6.38244 6.49874 6.57304 6.65628 6.79472 6.94537 7.25432 7.42848 7.57192 7.64501 8.00498 8.35586 8.76551 8.87810 9.39702 10.90699 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.009848 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.381997 B = 2842.562501 C = 3856.039213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.082 3.918 10 H 0.039 0.961 11 C -0.116 4.116 12 C -0.120 4.120 13 C -0.019 4.019 14 C -0.042 4.042 15 N -0.485 5.485 16 C 0.162 3.838 17 N -0.432 5.432 18 C 0.050 3.950 19 C 0.096 3.904 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.023 4.023 23 H 0.266 0.734 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 -7.083 3.232 10.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.714 3.286 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.096 0.904 9 C 0.062 3.938 10 H 0.057 0.943 11 C -0.154 4.154 12 C -0.158 4.158 13 C -0.057 4.057 14 C -0.171 4.171 15 N -0.205 5.205 16 C -0.098 4.098 17 N -0.113 5.113 18 C -0.068 4.068 19 C -0.026 4.026 20 C -0.172 4.172 21 C -0.161 4.161 22 C -0.062 4.062 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.816 -7.481 2.972 10.548 hybrid contribution -0.361 1.469 0.333 1.549 sum 6.455 -6.012 3.306 9.420 Atomic orbital electron populations 1.69874 1.06238 1.27248 1.49889 1.24962 0.94710 0.99002 0.93999 0.86877 0.79859 0.83430 0.78400 1.20206 1.22337 1.18923 1.20919 0.88041 0.94535 1.52253 0.90449 1.17889 0.96562 0.85006 0.94370 0.94294 1.21988 0.93676 0.99226 1.00466 1.21662 0.97872 0.95462 1.00837 1.19726 0.97800 0.91947 0.96240 1.20356 1.01223 0.91018 1.04486 1.69556 1.23583 1.12013 1.15318 1.22926 0.94756 0.91688 1.00416 1.44723 1.26808 1.08361 1.31403 1.21215 0.97409 0.91787 0.96407 1.22197 0.91340 0.97736 0.91317 1.21898 0.98032 0.94225 1.03007 1.21667 0.96521 1.00547 0.97403 1.19986 1.01060 0.89196 0.95976 0.92419 0.91394 0.93174 0.92337 0.92399 0.91865 0.91686 0.90718 0.86208 0.90948 0.89851 0.90746 0.91508 0.90257 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 13.96 55.43 0.77 -25.21 16 2 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 3 Si 0.88 21.03 24.29 -169.99 -4.13 16.90 16 4 H -0.28 -6.42 6.97 56.52 0.39 -6.02 16 5 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.02 6.52 56.52 0.37 -5.66 16 7 C -0.52 -13.81 8.08 -34.44 -0.28 -14.09 16 8 H 0.08 2.20 5.83 -52.48 -0.31 1.90 16 9 C 0.08 1.92 2.00 -92.74 -0.19 1.74 16 10 H 0.04 0.94 7.25 -51.93 -0.38 0.57 16 11 C -0.12 -2.50 4.51 -26.47 -0.12 -2.62 16 12 C -0.12 -2.18 5.90 -26.48 -0.16 -2.34 16 13 C -0.02 -0.35 6.30 -27.62 -0.17 -0.52 16 14 C -0.04 -0.92 6.98 -82.78 -0.58 -1.50 16 15 N -0.49 -10.44 11.24 -6.80 -0.08 -10.52 16 16 C 0.16 3.15 7.64 -154.86 -1.18 1.96 16 17 N -0.43 -8.84 3.12 -109.18 -0.34 -9.18 16 18 C 0.05 1.13 6.17 -82.00 -0.51 0.62 16 19 C 0.10 1.69 6.46 -3.92 -0.03 1.67 16 20 C -0.13 -1.79 5.94 -26.53 -0.16 -1.95 16 21 C -0.12 -1.45 5.96 -26.44 -0.16 -1.61 16 22 C -0.02 -0.33 6.32 -27.53 -0.17 -0.50 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 25 H 0.05 1.10 3.68 -51.93 -0.19 0.91 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.12 2.46 5.29 -51.93 -0.27 2.18 16 32 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 278.84 15.07 4.20 4.20 Total: -1.00 -30.70 278.84 -8.75 -39.45 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.39 Total: 1.52 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -3.79 Total: -17.15 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.36 Total: -44.91 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.13 Total: 16.90 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.70 -8.75 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.933 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds