Wall clock time and date at job start Mon Mar 30 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99481 * 2 1 4 4 H 1.48497 * 109.47277 * 270.00268 * 3 2 1 5 5 H 1.48499 * 109.47264 * 30.00938 * 3 2 1 6 6 H 1.48501 * 109.46914 * 150.00596 * 3 2 1 7 7 C 1.37878 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99383 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00137 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.81313 * 60.52248 * 9 7 2 11 11 C 1.53383 * 109.64110 * 299.99918 * 9 7 2 12 12 C 1.53120 * 109.45680 * 190.64525 * 11 9 7 13 13 C 1.53365 * 109.47677 * 70.05188 * 12 11 9 14 14 C 1.50841 * 108.43347 * 309.97656 * 13 12 11 15 15 N 1.33736 * 127.90815 * 196.84067 * 14 13 12 16 16 C 1.30335 * 109.05991 * 179.71740 * 15 14 13 17 17 N 1.35639 * 108.75879 * 0.12076 * 16 15 14 18 18 C 1.35177 * 124.01572 * 16.68051 * 14 13 12 19 19 C 1.46498 * 124.66960 * 179.97438 * 17 16 15 20 20 C 1.53241 * 108.86844 * 342.87229 * 19 17 16 21 21 C 1.53156 * 109.49626 * 50.43982 * 20 19 17 22 22 C 1.50990 * 127.22486 * 180.20803 * 16 15 14 23 23 H 0.96993 * 120.00463 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47533 * 310.64440 * 11 9 7 25 25 H 1.09005 * 109.47455 * 70.65468 * 11 9 7 26 26 H 1.08991 * 109.46967 * 190.04738 * 12 11 9 27 27 H 1.08997 * 109.46862 * 310.04581 * 12 11 9 28 28 H 1.08997 * 109.62665 * 190.30818 * 13 12 11 29 29 H 1.09001 * 109.84455 * 69.77048 * 13 12 11 30 30 H 1.08998 * 109.57146 * 102.70509 * 19 17 16 31 31 H 1.08999 * 109.56909 * 223.07326 * 19 17 16 32 32 H 1.09000 * 109.47117 * 290.43129 * 20 19 17 33 33 H 1.08993 * 109.46193 * 170.44476 * 20 19 17 34 34 H 1.09007 * 109.51812 * 170.56173 * 21 20 19 35 35 H 1.09001 * 109.52184 * 50.39005 * 21 20 19 36 36 H 1.09003 * 109.71277 * 283.60958 * 22 16 15 37 37 H 1.09009 * 109.70814 * 44.19167 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4403 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8814 -0.6895 0.8916 11 6 4.0266 -0.4713 -1.2522 12 6 5.5344 -0.7005 -1.3892 13 6 5.7972 -2.1640 -1.7649 14 6 5.0310 -3.0463 -0.8110 15 7 5.2076 -4.3510 -0.5765 16 6 4.3480 -4.7422 0.3217 17 7 3.5864 -3.6813 0.6879 18 6 4.0181 -2.6127 -0.0277 19 6 2.5087 -3.7316 1.6789 20 6 2.1055 -5.1935 1.8988 21 6 3.3565 -6.0328 2.1749 22 6 4.1904 -6.1318 0.8910 23 1 -0.4850 0.8399 0.0004 24 1 3.5180 -0.8628 -2.1332 25 1 3.8281 0.5967 -1.1626 26 1 5.9317 -0.0488 -2.1672 27 1 6.0236 -0.4751 -0.4416 28 1 6.8631 -2.3768 -1.6848 29 1 5.4621 -2.3500 -2.7853 30 1 2.8567 -3.3032 2.6189 31 1 1.6505 -3.1673 1.3140 32 1 1.6047 -5.5704 1.0071 33 1 1.4287 -5.2594 2.7506 34 1 3.0613 -7.0321 2.4952 35 1 3.9480 -5.5584 2.9579 36 1 3.6803 -6.7693 0.1689 37 1 5.1712 -6.5483 1.1207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260012239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:16 Heat of formation + Delta-G solvation = 21.208870 kcal Electronic energy + Delta-G solvation = -18616.226562 eV Core-core repulsion = 15971.466379 eV Total energy + Delta-G solvation = -2644.760183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.32268 -38.43023 -36.96741 -34.85895 -34.05975 -31.77485 -30.28003 -29.04110 -27.10443 -25.11296 -23.28009 -22.97027 -22.33753 -20.13123 -19.55187 -19.00624 -17.61714 -16.71902 -16.27091 -15.84675 -15.43563 -15.10674 -15.05730 -14.89779 -14.64655 -14.35241 -14.10207 -13.35821 -13.24995 -13.06797 -12.84180 -12.61458 -12.25632 -12.12984 -11.91995 -11.90255 -11.71600 -11.65543 -11.34665 -11.12239 -10.74391 -10.56560 -10.19137 -8.74674 -8.33213 -6.38062 1.27346 1.31576 1.35131 1.44943 2.07389 2.19950 2.29751 3.01469 3.41108 3.71202 3.76146 3.85861 4.01793 4.09653 4.17044 4.33903 4.39881 4.48967 4.62663 4.66557 4.74010 4.77943 4.84079 4.87111 4.94363 4.96932 5.02751 5.08527 5.10033 5.14854 5.28946 5.37854 5.55363 5.62850 5.78641 5.99584 6.24619 6.50507 6.65339 7.24920 7.30190 8.81592 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.009848 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.381997 B = 2842.562501 C = 3856.039213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.023 3.977 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.515 4.515 8 H 0.044 0.956 9 C 0.085 3.915 10 H 0.030 0.970 11 C -0.115 4.115 12 C -0.111 4.111 13 C -0.019 4.019 14 C -0.049 4.049 15 N -0.513 5.513 16 C 0.169 3.831 17 N -0.441 5.441 18 C 0.004 3.996 19 C 0.092 3.908 20 C -0.127 4.127 21 C -0.113 4.113 22 C -0.026 4.026 23 H 0.267 0.733 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.488 -7.935 3.665 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.175 4.175 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.172 1.172 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.065 3.935 10 H 0.048 0.952 11 C -0.153 4.153 12 C -0.149 4.149 13 C -0.057 4.057 14 C -0.177 4.177 15 N -0.233 5.233 16 C -0.092 4.092 17 N -0.122 5.122 18 C -0.113 4.113 19 C -0.029 4.029 20 C -0.164 4.164 21 C -0.151 4.151 22 C -0.064 4.064 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.787 -8.337 3.406 12.582 hybrid contribution -1.022 1.593 0.215 1.905 sum 7.765 -6.744 3.621 10.903 Atomic orbital electron populations 1.70007 1.07950 1.28123 1.51983 1.25730 0.95366 1.02522 0.93888 0.85964 0.79176 0.79038 0.79108 1.18933 1.22458 1.17182 1.21109 0.90004 0.93285 1.50923 0.93824 1.17743 0.94222 0.86506 0.94998 0.95218 1.21901 0.96367 0.98529 0.98523 1.21618 0.94971 0.95936 1.02360 1.19850 0.98623 0.91546 0.95712 1.20940 1.00925 0.91609 1.04248 1.69623 1.24991 1.11931 1.16743 1.24066 0.93022 0.93247 0.98858 1.44976 1.27305 1.08290 1.31599 1.21236 0.99172 0.92102 0.98825 1.22264 0.89395 1.00680 0.90603 1.21917 0.99529 0.91155 1.03811 1.21665 0.94943 1.02280 0.96164 1.20311 1.02875 0.86102 0.97159 0.92397 0.92969 0.93257 0.88871 0.91948 0.89782 0.91144 0.90134 0.90166 0.91762 0.87099 0.86711 0.91271 0.88914 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 2 C 0.02 1.30 5.45 84.65 0.46 1.76 16 3 Si 0.94 43.54 24.29 68.60 1.67 45.21 16 4 H -0.26 -11.64 6.97 99.48 0.69 -10.95 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 7 C -0.52 -28.57 8.08 25.60 0.21 -28.36 16 8 H 0.04 2.66 5.83 -2.91 -0.02 2.65 16 9 C 0.09 4.08 2.00 -12.17 -0.02 4.05 16 10 H 0.03 1.46 7.25 -2.39 -0.02 1.44 16 11 C -0.12 -4.91 4.51 30.76 0.14 -4.77 16 12 C -0.11 -3.76 5.90 30.76 0.18 -3.58 16 13 C -0.02 -0.67 6.30 30.02 0.19 -0.48 16 14 C -0.05 -2.09 6.98 41.61 0.29 -1.80 16 15 N -0.51 -21.60 11.24 -175.44 -1.97 -23.57 16 16 C 0.17 6.38 7.64 138.08 1.05 7.44 16 17 N -0.44 -18.22 3.12 -499.35 -1.56 -19.78 16 18 C 0.00 0.19 6.17 41.25 0.25 0.44 16 19 C 0.09 3.32 6.46 86.46 0.56 3.88 16 20 C -0.13 -3.18 5.94 30.73 0.18 -3.00 16 21 C -0.11 -2.27 5.96 30.78 0.18 -2.08 16 22 C -0.03 -0.65 6.32 30.08 0.19 -0.46 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 24 H 0.05 2.34 8.08 -2.39 -0.02 2.32 16 25 H 0.05 2.08 3.68 -2.38 -0.01 2.07 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.06 2.07 8.11 -2.39 -0.02 2.05 16 28 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.08 3.53 5.29 -2.39 -0.01 3.52 16 32 H 0.06 1.73 8.12 -2.39 -0.02 1.71 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.17 16 34 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -69.19 278.84 3.29 -65.90 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.99 Total: 15.67 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.87 Total: -26.96 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -3.23 Total: -99.81 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.67 Total: 45.21 kcal Total: -69.19 3.29 -65.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.104 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds