Wall clock time and date at job start Mon Mar 30 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00053 * 2 1 4 4 H 1.48495 * 109.46632 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46788 * 300.00116 * 3 2 1 6 6 H 1.48496 * 109.47121 * 60.00194 * 3 2 1 7 7 C 1.37880 * 119.99371 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00673 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.69810 * 299.47617 * 9 7 2 11 11 C 1.53384 * 109.67483 * 59.99572 * 9 7 2 12 12 C 1.53125 * 109.43856 * 169.49486 * 11 9 7 13 13 C 1.53340 * 109.51633 * 289.95946 * 12 11 9 14 14 C 1.50837 * 108.45707 * 49.91562 * 13 12 11 15 15 N 1.33730 * 127.92521 * 163.46616 * 14 13 12 16 16 C 1.30327 * 109.06986 * 179.97438 * 15 14 13 17 17 N 1.35637 * 108.75827 * 0.08003 * 16 15 14 18 18 C 1.35174 * 124.00592 * 343.43171 * 14 13 12 19 19 C 1.46494 * 124.68740 * 179.87212 * 17 16 15 20 20 C 1.53241 * 108.85557 * 342.88130 * 19 17 16 21 21 C 1.53155 * 109.48293 * 50.46334 * 20 19 17 22 22 C 1.50995 * 127.24193 * 180.14844 * 16 15 14 23 23 H 0.97003 * 119.99679 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47774 * 49.50305 * 11 9 7 25 25 H 1.08995 * 109.47733 * 289.48738 * 11 9 7 26 26 H 1.09006 * 109.46453 * 49.96880 * 12 11 9 27 27 H 1.08997 * 109.46536 * 169.94948 * 12 11 9 28 28 H 1.08997 * 109.64526 * 169.60965 * 13 12 11 29 29 H 1.09000 * 109.64076 * 290.22908 * 13 12 11 30 30 H 1.08997 * 109.57373 * 102.72311 * 19 17 16 31 31 H 1.09006 * 109.56727 * 223.09119 * 19 17 16 32 32 H 1.08996 * 109.48473 * 290.44871 * 20 19 17 33 33 H 1.09007 * 109.45797 * 170.45407 * 20 19 17 34 34 H 1.09005 * 109.51423 * 170.54128 * 21 20 19 35 35 H 1.08998 * 109.56636 * 50.40505 * 21 20 19 36 36 H 1.09002 * 109.71050 * 283.70097 * 22 16 15 37 37 H 1.09002 * 109.70577 * 44.32093 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6296 -2.5655 0.8914 11 6 0.3678 -2.5845 -1.2528 12 6 -0.1897 -4.0043 -1.3873 13 6 0.9441 -4.9667 -1.7607 14 6 2.0929 -4.7434 -0.8091 15 7 3.1363 -5.5471 -0.5772 16 6 3.9092 -4.9948 0.3150 17 7 3.3701 -3.8059 0.6832 18 6 2.2256 -3.6481 -0.0280 19 6 3.9544 -2.8958 1.6713 20 6 4.9851 -3.6650 2.5045 21 6 5.9483 -4.4037 1.5705 22 6 5.1986 -5.5466 0.8744 23 1 -0.4850 0.8401 0.0004 24 1 0.9617 -2.3423 -2.1342 25 1 -0.4567 -1.8771 -1.1646 26 1 -0.6304 -4.3128 -0.4391 27 1 -0.9528 -4.0228 -2.1654 28 1 0.5940 -5.9955 -1.6773 29 1 1.2707 -4.7694 -2.7818 30 1 4.4431 -2.0665 1.1599 31 1 3.1698 -2.5131 2.3241 32 1 4.4727 -4.3856 3.1418 33 1 5.5456 -2.9655 3.1248 34 1 6.7767 -4.8113 2.1500 35 1 6.3335 -3.7115 0.8218 36 1 4.9793 -6.3348 1.5946 37 1 5.8088 -5.9471 0.0648 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:18 Heat of formation + Delta-G solvation = 29.670549 kcal Electronic energy + Delta-G solvation = -18559.650261 eV Core-core repulsion = 15915.257004 eV Total energy + Delta-G solvation = -2644.393257 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67106 -36.80876 -35.25224 -33.15171 -32.31107 -29.65755 -28.59372 -27.26578 -25.38847 -23.64640 -21.84773 -21.12376 -20.70314 -18.54095 -17.95282 -16.60255 -15.68967 -15.22208 -14.55354 -14.23697 -14.12584 -13.85365 -13.24795 -13.17550 -12.74720 -12.64117 -12.33342 -11.68380 -11.62929 -11.12072 -11.03114 -10.98815 -10.90859 -10.82178 -10.63359 -10.40830 -10.02696 -9.74389 -9.71104 -9.08692 -8.90302 -8.52985 -8.43767 -7.02288 -6.10856 -4.18581 2.97370 3.20286 3.29494 3.31360 3.60039 3.89211 4.33183 4.71973 4.86668 4.89381 5.02800 5.19255 5.49916 5.62075 5.69546 5.81853 5.85873 5.89392 5.98224 5.99909 6.05373 6.10196 6.27096 6.31746 6.42949 6.57137 6.63951 6.76725 6.94997 7.08566 7.13761 7.44468 7.60746 7.74380 7.84730 7.98723 8.10232 8.27850 8.80451 8.98240 9.46275 10.94284 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.010228 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.474971 B = 2736.818768 C = 3952.050019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.115 3.885 10 H 0.039 0.961 11 C -0.098 4.098 12 C -0.121 4.121 13 C -0.020 4.020 14 C -0.045 4.045 15 N -0.486 5.486 16 C 0.155 3.845 17 N -0.437 5.437 18 C 0.047 3.953 19 C 0.114 3.886 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.022 4.022 23 H 0.262 0.738 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -6.025 3.390 9.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.095 3.905 10 H 0.057 0.943 11 C -0.137 4.137 12 C -0.159 4.159 13 C -0.058 4.058 14 C -0.173 4.173 15 N -0.205 5.205 16 C -0.105 4.105 17 N -0.119 5.119 18 C -0.071 4.071 19 C -0.009 4.009 20 C -0.173 4.173 21 C -0.161 4.161 22 C -0.061 4.061 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.015 -6.554 3.126 10.097 hybrid contribution 0.356 1.796 0.348 1.864 sum 7.371 -4.759 3.474 9.436 Atomic orbital electron populations 1.69906 1.05812 1.26583 1.49912 1.24930 0.94852 0.98957 0.94802 0.86564 0.80039 0.83847 0.77756 1.19905 1.20850 1.20931 1.21087 0.92776 0.89952 1.51688 0.92647 1.17484 0.89799 0.87763 0.95434 0.94341 1.21588 1.00530 0.93562 0.97988 1.21725 0.96497 0.97453 1.00246 1.19763 0.91435 0.98651 0.95955 1.20395 0.98478 0.93709 1.04743 1.69531 1.04638 1.30977 1.15353 1.22882 0.99663 0.87008 1.00905 1.44743 1.18784 1.16674 1.31722 1.21888 0.89650 0.99783 0.95745 1.21859 0.96881 0.91854 0.90280 1.21936 0.97171 1.00076 0.98146 1.21649 0.97879 0.97719 0.98898 1.19954 0.89696 0.97032 0.99407 0.92825 0.93824 0.89136 0.92845 0.92942 0.92376 0.92137 0.89814 0.88890 0.91157 0.89933 0.90794 0.91355 0.90453 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.05 11.48 55.43 0.64 -23.42 16 2 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 3 Si 0.89 20.41 29.54 -169.99 -5.02 15.38 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.50 7.76 -34.44 -0.27 -13.76 16 8 H 0.06 1.45 5.92 -52.48 -0.31 1.13 16 9 C 0.11 2.85 2.43 -92.73 -0.23 2.62 16 10 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 11 C -0.10 -2.31 4.82 -26.47 -0.13 -2.44 16 12 C -0.12 -2.42 5.90 -26.49 -0.16 -2.57 16 13 C -0.02 -0.39 6.30 -27.64 -0.17 -0.57 16 14 C -0.05 -1.03 6.98 -82.79 -0.58 -1.61 16 15 N -0.49 -10.79 11.24 -6.81 -0.08 -10.87 16 16 C 0.16 3.07 7.64 -154.87 -1.18 1.88 16 17 N -0.44 -9.05 3.12 -109.18 -0.34 -9.39 16 18 C 0.05 1.09 6.17 -81.99 -0.51 0.59 16 19 C 0.11 1.96 5.52 -3.92 -0.02 1.94 16 20 C -0.14 -1.71 5.94 -26.53 -0.16 -1.87 16 21 C -0.12 -1.47 5.96 -26.45 -0.16 -1.63 16 22 C -0.02 -0.31 6.32 -27.54 -0.17 -0.49 16 23 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 24 H 0.04 1.06 8.08 -51.93 -0.42 0.64 16 25 H 0.09 2.29 6.46 -51.93 -0.34 1.96 16 26 H 0.05 1.07 8.11 -51.93 -0.42 0.64 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.49 7.05 -51.93 -0.37 1.13 16 31 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 32 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 287.20 15.07 4.33 4.33 Total: -1.00 -29.71 287.20 -9.93 -39.64 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.64 Total: 0.55 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -3.82 Total: -16.23 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.22 Total: -43.67 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.71 -9.93 -39.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.311 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds