Wall clock time and date at job start Mon Mar 30 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47165 * 2 1 4 4 C 1.35901 * 116.99782 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.05644 * 0.02562 * 4 3 2 6 6 C 1.38122 * 119.94237 * 179.97438 * 5 4 3 7 7 C 1.38295 * 120.05838 * 359.97438 * 6 5 4 8 8 C 1.38245 * 120.10876 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.97212 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47052 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46783 * 60.00125 * 9 8 7 12 12 H 1.08000 * 119.99606 * 275.48409 * 11 9 8 13 13 C 1.37874 * 119.99769 * 95.49532 * 11 9 8 14 14 N 1.31511 * 120.00386 * 5.93873 * 13 11 9 15 15 Si 1.86802 * 119.99580 * 185.94093 * 13 11 9 16 16 H 1.48494 * 109.47373 * 59.99818 * 15 13 11 17 17 H 1.48504 * 109.47109 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47021 * 299.99398 * 15 13 11 19 19 C 1.52990 * 109.47121 * 300.00023 * 9 8 7 20 20 C 1.53008 * 117.50116 * 254.15131 * 19 9 8 21 21 C 1.53003 * 117.50008 * 185.49401 * 19 9 8 22 22 C 1.38170 * 120.05611 * 359.97438 * 8 7 6 23 23 H 1.09002 * 109.46872 * 60.00575 * 1 2 3 24 24 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47339 * 300.00283 * 1 2 3 26 26 H 1.08999 * 109.47339 * 239.99717 * 2 1 3 27 27 H 1.09002 * 109.46872 * 119.99425 * 2 1 3 28 28 H 1.07998 * 120.02888 * 359.94935 * 5 4 3 29 29 H 1.08000 * 119.97244 * 180.02562 * 6 5 4 30 30 H 1.07992 * 119.94630 * 180.02562 * 7 6 5 31 31 H 0.97003 * 119.99861 * 180.02562 * 14 13 11 32 32 H 1.09004 * 115.55379 * 39.81928 * 19 9 8 33 33 H 1.08998 * 117.49399 * 359.97438 * 20 19 9 34 34 H 1.08998 * 117.49999 * 145.02010 * 20 19 9 35 35 H 1.09005 * 117.49867 * 214.97947 * 21 19 9 36 36 H 1.09007 * 117.49715 * 359.97336 * 21 19 9 37 37 H 1.07997 * 120.03052 * 180.27598 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5688 0.6094 0.0005 7 6 6.0962 1.8878 0.0000 8 6 5.2552 2.9850 0.0001 9 6 5.8332 4.3767 -0.0011 10 1 5.0235 5.1064 -0.0014 11 6 6.6811 4.5674 -1.2323 12 1 7.7112 4.2432 -1.2340 13 6 6.1416 5.1561 -2.3564 14 7 4.9260 5.6564 -2.3176 15 14 7.1375 5.2428 -3.9344 16 1 7.4812 3.8683 -4.3790 17 1 6.3383 5.9190 -4.9876 18 1 8.3850 6.0108 -3.6908 19 6 6.6957 4.5717 1.2474 20 6 6.1272 5.4421 2.3700 21 6 7.2705 5.9673 1.4981 22 6 3.8850 2.8066 0.0000 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.7885 -0.5728 0.0009 29 1 6.2280 -0.2461 0.0001 30 1 7.1668 2.0293 -0.0004 31 1 4.5464 6.0702 -3.1086 32 1 7.3075 3.7164 1.5345 33 1 5.1389 5.8762 2.2188 34 1 6.3653 5.1597 3.3955 35 1 8.2602 6.0302 1.9504 36 1 7.0344 6.7465 0.7732 37 1 3.2284 3.6640 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:05 Heat of formation + Delta-G solvation = -18.605577 kcal Electronic energy + Delta-G solvation = -17570.812224 eV Core-core repulsion = 14892.032806 eV Total energy + Delta-G solvation = -2678.779418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97175 -39.13574 -37.55279 -34.83184 -32.80585 -32.52458 -30.41041 -28.77318 -25.72351 -24.35920 -23.32360 -22.99862 -22.01436 -20.73960 -18.85559 -18.19091 -16.95385 -16.87356 -16.61209 -16.44165 -16.12556 -15.07628 -14.67944 -14.42756 -14.14345 -14.09322 -13.53839 -13.35923 -13.22227 -12.90666 -12.75493 -12.46021 -12.41159 -12.24911 -12.23663 -11.82724 -11.58960 -11.51317 -11.11561 -10.95572 -10.51981 -10.39224 -9.44248 -8.92185 -8.10616 -6.18457 0.67662 0.74213 1.40909 1.42749 1.49307 2.37945 2.43358 3.05797 3.19119 3.30215 4.00182 4.08346 4.08785 4.17323 4.27894 4.33405 4.38268 4.41436 4.56132 4.67774 4.73809 4.83214 4.87517 4.93517 4.95275 5.06257 5.21419 5.22836 5.36220 5.41659 5.47071 5.53070 5.68001 5.77055 5.79958 6.07486 6.19562 6.39060 6.66986 6.94610 7.45996 8.96653 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.007187 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.954570 B = 3894.835337 C = 4549.080992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.343 6.343 4 C 0.116 3.884 5 C -0.232 4.232 6 C -0.081 4.081 7 C -0.164 4.164 8 C -0.001 4.001 9 C 0.090 3.910 10 H 0.028 0.972 11 C -0.501 4.501 12 H 0.058 0.942 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.948 3.052 16 H -0.272 1.272 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.136 4.136 20 C -0.184 4.184 21 C -0.167 4.167 22 C -0.183 4.183 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.121 0.879 31 H 0.259 0.741 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 -11.210 6.225 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.258 6.258 4 C 0.072 3.928 5 C -0.250 4.250 6 C -0.099 4.099 7 C -0.182 4.182 8 C -0.002 4.002 9 C 0.071 3.929 10 H 0.047 0.953 11 C -0.538 4.538 12 H 0.076 0.924 13 C -0.185 4.185 14 N -0.562 5.562 15 Si 0.774 3.226 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.154 4.154 20 C -0.221 4.221 21 C -0.204 4.204 22 C -0.202 4.202 23 H 0.075 0.925 24 H 0.125 0.875 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.168 0.832 29 H 0.169 0.831 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.763 -10.969 6.111 12.857 hybrid contribution 0.199 0.455 -1.196 1.295 sum -2.564 -10.514 4.915 11.886 Atomic orbital electron populations 1.21807 0.91434 1.04266 1.02912 1.23060 0.96930 0.80928 1.02146 1.86039 1.19211 1.31467 1.89058 1.19056 0.82518 0.94112 0.97140 1.21264 0.94249 0.97778 1.11722 1.21205 0.94672 0.97164 0.96872 1.20983 0.99847 0.92154 1.05245 1.20432 0.91590 0.97956 0.90236 1.17553 0.94264 0.89234 0.91817 0.95316 1.21139 0.97187 1.38202 0.97314 0.92402 1.25728 0.95975 0.94850 1.01938 1.70057 1.16869 1.39425 1.29866 0.85763 0.78949 0.78384 0.79550 1.19741 1.21516 1.19084 1.22370 1.02417 0.94175 0.96417 1.23017 0.97624 1.05180 0.96261 1.22720 0.97781 0.97660 1.02231 1.20318 0.95389 0.94465 1.10015 0.92457 0.87533 0.91920 0.91579 0.90818 0.83248 0.83089 0.86131 0.93198 0.88315 0.90921 0.87265 0.87601 0.91328 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.28 71.98 0.74 -2.05 16 2 C 0.04 1.07 5.46 71.98 0.39 1.46 16 3 O -0.34 -12.49 10.14 -92.43 -0.94 -13.43 16 4 C 0.12 4.68 6.69 22.51 0.15 4.83 16 5 C -0.23 -7.74 9.04 22.36 0.20 -7.54 16 6 C -0.08 -2.73 10.04 22.26 0.22 -2.50 16 7 C -0.16 -6.66 8.66 22.29 0.19 -6.46 16 8 C 0.00 -0.07 4.77 -19.88 -0.09 -0.16 16 9 C 0.09 4.54 2.23 -12.29 -0.03 4.51 16 10 H 0.03 1.66 6.76 -2.39 -0.02 1.65 16 11 C -0.50 -27.13 7.71 25.60 0.20 -26.93 16 12 H 0.06 3.06 7.82 -2.91 -0.02 3.03 16 13 C 0.01 0.77 5.45 84.65 0.46 1.23 16 14 N -0.92 -55.25 12.76 21.45 0.27 -54.98 16 15 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 19 C -0.14 -5.69 4.93 -10.79 -0.05 -5.74 16 20 C -0.18 -6.77 10.18 30.62 0.31 -6.45 16 21 C -0.17 -6.44 10.02 30.62 0.31 -6.13 16 22 C -0.18 -8.67 9.61 22.37 0.21 -8.45 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.48 7.66 -2.39 -0.02 1.47 16 27 H 0.07 1.54 7.66 -2.39 -0.02 1.52 16 28 H 0.15 3.80 6.30 -2.91 -0.02 3.78 16 29 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.12 4.67 7.79 -2.91 -0.02 4.65 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.10 3.83 7.42 -2.38 -0.02 3.81 16 33 H 0.07 2.86 8.08 -2.39 -0.02 2.84 16 34 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 36 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.09 4.75 7.94 -2.91 -0.02 4.73 16 Total: -1.00 -65.08 311.49 5.62 -59.47 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 1.03 Total: 23.02 kcal Atomic # 6 Polarization: -63.62 SS G_CDS: 3.22 Total: -60.40 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.27 Total: -54.98 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.94 Total: -13.43 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.08 5.62 -59.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.861 kcal (2) G-P(sol) polarization free energy of solvation -65.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds