Wall clock time and date at job start Mon Mar 30 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.66467 * 2 1 4 4 C 1.54698 * 110.90925 * 123.32897 * 2 1 3 5 5 C 1.51647 * 101.92119 * 143.70941 * 4 2 1 6 6 C 1.37742 * 132.17282 * 164.28629 * 5 4 2 7 7 C 1.38355 * 119.97525 * 180.31546 * 6 5 4 8 8 C 1.38286 * 119.76408 * 0.43683 * 7 6 5 9 9 C 1.50701 * 119.81988 * 179.61873 * 8 7 6 10 10 C 1.53004 * 109.46827 * 184.34977 * 9 8 7 11 11 C 1.52998 * 109.47281 * 64.35210 * 9 8 7 12 12 C 1.50690 * 109.47286 * 304.34838 * 9 8 7 13 13 H 1.08010 * 120.00074 * 359.74446 * 12 9 8 14 14 C 1.37879 * 120.00096 * 180.02562 * 12 9 8 15 15 N 1.31509 * 119.99941 * 359.72671 * 14 12 9 16 16 Si 1.86803 * 120.00061 * 179.72487 * 14 12 9 17 17 H 1.48510 * 109.46961 * 90.00105 * 16 14 12 18 18 H 1.48494 * 109.47439 * 210.00122 * 16 14 12 19 19 H 1.48497 * 109.47199 * 330.00465 * 16 14 12 20 20 C 1.37932 * 120.35178 * 359.33582 * 8 7 6 21 21 C 1.38882 * 107.03489 * 344.50044 * 5 4 2 22 22 O 1.36129 * 111.24115 * 359.10184 * 21 5 4 23 23 H 1.08998 * 109.46815 * 181.75719 * 1 2 3 24 24 H 1.09004 * 109.46713 * 301.75849 * 1 2 3 25 25 H 1.08999 * 109.47036 * 61.75558 * 1 2 3 26 26 H 1.08997 * 110.94119 * 261.86758 * 4 2 1 27 27 H 1.09000 * 110.94140 * 25.51913 * 4 2 1 28 28 H 1.08001 * 120.00771 * 0.56600 * 6 5 4 29 29 H 1.07997 * 120.11135 * 180.19974 * 7 6 5 30 30 H 1.09001 * 109.47102 * 180.02562 * 10 9 8 31 31 H 1.09002 * 109.46935 * 300.00079 * 10 9 8 32 32 H 1.08997 * 109.46841 * 60.00197 * 10 9 8 33 33 H 1.09001 * 109.46944 * 300.00013 * 11 9 8 34 34 H 1.09002 * 109.47262 * 59.99443 * 11 9 8 35 35 H 1.09001 * 109.47406 * 179.97438 * 11 9 8 36 36 H 0.96997 * 120.00163 * 179.97438 * 15 14 12 37 37 H 1.07996 * 119.87545 * 180.35181 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0821 -0.7940 1.2074 5 6 3.3111 -1.4540 0.6128 6 6 4.4037 -2.0635 1.1891 7 6 5.4046 -2.5870 0.3900 8 6 5.3072 -2.4876 -0.9858 9 6 6.4008 -3.0498 -1.8571 10 6 6.1078 -2.7172 -3.3215 11 6 6.4627 -4.5685 -1.6816 12 6 7.7217 -2.4438 -1.4589 13 1 7.7646 -1.7205 -0.6580 14 6 8.8750 -2.8085 -2.1208 15 7 8.8229 -3.6891 -3.0961 16 14 10.5114 -2.0515 -1.6323 17 1 11.1478 -2.8845 -0.5804 18 1 11.4015 -1.9880 -2.8193 19 1 10.2859 -0.6803 -1.1088 20 6 4.2117 -1.8819 -1.5650 21 6 3.1968 -1.3576 -0.7680 22 8 2.0394 -0.7363 -1.1249 23 1 -0.3633 -1.0272 0.0315 24 1 -0.3633 0.5409 0.8738 25 1 -0.3633 0.4863 -0.9053 26 1 2.3557 -0.1237 2.0223 27 1 1.3630 -1.5405 1.5445 28 1 4.4771 -2.1361 2.2641 29 1 6.2607 -3.0681 0.8395 30 1 6.8985 -3.1242 -3.9517 31 1 5.1523 -3.1555 -3.6095 32 1 6.0637 -1.6353 -3.4465 33 1 6.6714 -4.8054 -0.6383 34 1 5.5072 -5.0068 -1.9696 35 1 7.2534 -4.9752 -2.3121 36 1 9.6341 -3.9454 -3.5621 37 1 4.1408 -1.8136 -2.6405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260024332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:42 Heat of formation + Delta-G solvation = -32.095098 kcal Electronic energy + Delta-G solvation = -17908.843611 eV Core-core repulsion = 15229.479244 eV Total energy + Delta-G solvation = -2679.364368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.01894 -39.38668 -36.52496 -34.07167 -33.28071 -31.09996 -30.77766 -27.67479 -27.31074 -26.92091 -23.26404 -22.97631 -22.50775 -20.64972 -18.44043 -17.69787 -17.43994 -16.84843 -16.54516 -15.88788 -15.02648 -14.86546 -14.57197 -14.44274 -13.98286 -13.71380 -13.58746 -13.28936 -13.17086 -12.94076 -12.80134 -12.75808 -12.55047 -12.36800 -12.19021 -11.99300 -11.85283 -11.59372 -11.41052 -11.10226 -10.76024 -10.36340 -9.52938 -8.87610 -7.99167 -6.15227 0.54733 0.56736 1.43400 1.45722 1.54342 2.34375 2.48006 2.93309 3.24196 3.57857 3.67502 4.02473 4.11381 4.29462 4.34163 4.42143 4.63969 4.72537 4.74636 4.79770 4.82389 4.90513 4.95841 5.02091 5.10140 5.16079 5.25856 5.32104 5.38376 5.48548 5.57742 5.61670 5.67505 5.82369 5.87971 6.16631 6.24883 6.39341 6.47723 6.88679 7.51620 9.00009 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037816 B = 0.005787 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.240502 B = 4837.272987 C = 5023.945282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 H 0.089 0.911 4 C -0.091 4.091 5 C -0.203 4.203 6 C -0.071 4.071 7 C -0.152 4.152 8 C -0.017 4.017 9 C 0.087 3.913 10 C -0.123 4.123 11 C -0.115 4.115 12 C -0.512 4.512 13 H 0.048 0.952 14 C 0.024 3.976 15 N -0.905 5.905 16 Si 0.948 3.052 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.169 4.169 21 C 0.086 3.914 22 O -0.327 6.327 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.149 0.851 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.030 0.970 34 H 0.019 0.981 35 H 0.065 0.935 36 H 0.260 0.740 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 5.457 8.649 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.009 3.991 3 H 0.107 0.893 4 C -0.128 4.128 5 C -0.204 4.204 6 C -0.089 4.089 7 C -0.170 4.170 8 C -0.017 4.017 9 C 0.087 3.913 10 C -0.181 4.181 11 C -0.173 4.173 12 C -0.550 4.550 13 H 0.066 0.934 14 C -0.175 4.175 15 N -0.544 5.544 16 Si 0.774 3.226 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.188 4.188 21 C 0.041 3.959 22 O -0.243 6.243 23 H 0.082 0.918 24 H 0.125 0.875 25 H 0.086 0.914 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.166 0.834 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.303 5.381 8.309 16.582 hybrid contribution 1.291 0.223 -0.202 1.326 sum -12.012 5.603 8.107 15.537 Atomic orbital electron populations 1.21887 0.90015 1.03595 1.04301 1.23713 0.97243 0.95361 0.82822 0.89318 1.21850 0.93220 0.99380 0.98340 1.21031 0.99204 1.06796 0.93391 1.20516 0.91657 0.96129 1.00554 1.21035 0.99819 1.03053 0.93122 1.20189 0.93260 0.93249 0.95049 1.17264 0.90462 0.92715 0.90835 1.21755 0.98746 0.98114 0.99443 1.21650 0.99034 0.96829 0.99786 1.21250 0.91821 1.24170 1.17721 0.93421 1.25538 1.01563 0.95465 0.94964 1.69932 1.28491 1.32811 1.23141 0.85715 0.80318 0.78846 0.77678 1.20126 1.21077 1.20052 1.20369 0.93172 1.05442 0.99792 1.19641 0.86958 0.95503 0.93797 1.86775 1.34491 1.63219 1.39767 0.91849 0.87525 0.91433 0.87157 0.88114 0.83377 0.86067 0.91793 0.95549 0.95885 0.95079 0.96156 0.91596 0.93076 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.61 71.98 0.69 -1.51 16 2 C 0.06 1.46 4.25 31.17 0.13 1.59 16 3 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.09 -1.99 6.65 30.73 0.20 -1.79 16 5 C -0.20 -6.54 6.27 -19.53 -0.12 -6.66 16 6 C -0.07 -2.33 10.03 22.18 0.22 -2.11 16 7 C -0.15 -6.12 8.61 22.31 0.19 -5.93 16 8 C -0.02 -0.78 4.72 -19.93 -0.09 -0.87 16 9 C 0.09 4.37 0.58 -53.68 -0.03 4.33 16 10 C -0.12 -6.11 6.91 71.98 0.50 -5.61 16 11 C -0.12 -5.62 8.10 71.98 0.58 -5.04 16 12 C -0.51 -27.62 7.57 25.60 0.19 -27.42 16 13 H 0.05 2.60 7.48 -2.91 -0.02 2.58 16 14 C 0.02 1.28 5.15 84.66 0.44 1.71 16 15 N -0.90 -49.96 9.35 21.45 0.20 -49.76 16 16 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 C -0.17 -7.25 9.01 22.45 0.20 -7.05 16 21 C 0.09 3.23 7.04 22.68 0.16 3.39 16 22 O -0.33 -11.00 10.81 -95.02 -1.03 -12.02 16 23 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 24 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.10 1.88 7.91 -2.39 -0.02 1.86 16 28 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.12 4.91 7.72 -2.91 -0.02 4.89 16 30 H 0.06 3.44 6.08 -2.39 -0.01 3.42 16 31 H 0.03 1.18 7.28 -2.39 -0.02 1.16 16 32 H 0.02 1.11 7.72 -2.39 -0.02 1.09 16 33 H 0.03 1.44 7.64 -2.39 -0.02 1.42 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 3.49 6.06 -2.39 -0.01 3.48 16 36 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.12 5.03 5.86 -2.91 -0.02 5.02 16 Total: -1.00 -61.24 294.46 5.51 -55.72 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.05 Total: 13.86 kcal Atomic # 6 Polarization: -56.23 SS G_CDS: 3.27 Total: -52.96 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.20 Total: -49.76 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.03 Total: -12.02 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -61.24 5.51 -55.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.629 kcal (2) G-P(sol) polarization free energy of solvation -61.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds