Wall clock time and date at job start Mon Mar 30 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.66581 * 2 1 4 4 C 1.54699 * 110.75003 * 236.77782 * 2 1 3 5 5 C 1.51645 * 101.94607 * 216.25838 * 4 2 1 6 6 C 1.38931 * 107.04168 * 15.36022 * 5 4 2 7 7 C 1.39240 * 118.87991 * 181.22285 * 6 5 4 8 8 C 1.37982 * 120.23530 * 359.43482 * 7 6 5 9 9 C 1.38238 * 120.35110 * 359.97438 * 8 7 6 10 10 C 1.37699 * 132.17737 * 195.61286 * 5 4 2 11 11 C 1.50701 * 120.00838 * 359.14098 * 10 5 4 12 12 C 1.53006 * 109.47022 * 295.65213 * 11 10 5 13 13 C 1.53002 * 109.46689 * 175.65597 * 11 10 5 14 14 C 1.50700 * 109.47118 * 55.65312 * 11 10 5 15 15 H 1.07994 * 119.99605 * 243.21911 * 14 11 10 16 16 C 1.37882 * 119.99771 * 63.22551 * 14 11 10 17 17 N 1.31507 * 120.00002 * 352.62845 * 16 14 11 18 18 Si 1.86798 * 119.99483 * 172.35240 * 16 14 11 19 19 H 1.48499 * 109.47121 * 270.27395 * 18 16 14 20 20 H 1.48492 * 109.47311 * 30.27529 * 18 16 14 21 21 H 1.48505 * 109.47015 * 150.27570 * 18 16 14 22 22 O 1.36133 * 111.21712 * 1.51972 * 6 5 4 23 23 H 1.08998 * 109.47016 * 183.21542 * 1 2 3 24 24 H 1.08993 * 109.46921 * 303.22072 * 1 2 3 25 25 H 1.09004 * 109.46553 * 63.22230 * 1 2 3 26 26 H 1.09003 * 110.93694 * 98.10112 * 4 2 1 27 27 H 1.08994 * 110.93933 * 334.42543 * 4 2 1 28 28 H 1.08003 * 119.88525 * 179.41012 * 7 6 5 29 29 H 1.07999 * 119.82074 * 180.02562 * 8 7 6 30 30 H 1.07994 * 120.11775 * 180.20649 * 9 8 7 31 31 H 1.08997 * 109.46446 * 186.83901 * 12 11 10 32 32 H 1.09002 * 109.47186 * 306.83679 * 12 11 10 33 33 H 1.08997 * 109.47078 * 66.84008 * 12 11 10 34 34 H 1.08996 * 109.47063 * 303.89806 * 13 11 10 35 35 H 1.09001 * 109.47405 * 63.90263 * 13 11 10 36 36 H 1.09000 * 109.46950 * 183.90270 * 13 11 10 37 37 H 0.97006 * 120.00347 * 354.80513 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7926 -1.2102 5 6 3.3081 -1.4552 -0.6204 6 6 3.1997 -1.3585 0.7613 7 6 4.2229 -1.8720 1.5537 8 6 5.3176 -2.4760 0.9697 9 6 5.4083 -2.5772 -0.4060 10 6 4.3971 -2.0663 -1.2008 11 6 4.4906 -2.1731 -2.7011 12 6 3.3558 -3.0578 -3.2211 13 6 5.8364 -2.7913 -3.0853 14 6 4.3764 -0.7995 -3.3106 15 1 3.5456 -0.5640 -3.9590 16 6 5.3328 0.1562 -3.0403 17 7 6.2625 -0.0798 -2.1407 18 14 5.3123 1.7833 -3.9577 19 1 6.1277 1.6653 -5.1932 20 1 3.9143 2.1305 -4.3186 21 1 5.8786 2.8476 -3.0906 22 8 2.0385 -0.7468 1.1227 23 1 -0.3633 -1.0260 0.0576 24 1 -0.3633 0.5630 0.8597 25 1 -0.3632 0.4630 -0.9175 26 1 2.3503 -0.1212 -2.0246 27 1 1.3575 -1.5380 -1.5463 28 1 4.1599 -1.7971 2.6293 29 1 6.1072 -2.8723 1.5908 30 1 6.2651 -3.0536 -0.8589 31 1 3.4928 -3.2345 -4.2879 32 1 3.3654 -4.0101 -2.6909 33 1 2.4010 -2.5590 -3.0551 34 1 6.6442 -2.1989 -2.6560 35 1 5.8904 -3.8106 -2.7029 36 1 5.9332 -2.8050 -4.1709 37 1 6.2322 -0.8937 -1.6138 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260034745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:46 Heat of formation + Delta-G solvation = -18.008034 kcal Electronic energy + Delta-G solvation = -18854.968273 eV Core-core repulsion = 16176.214767 eV Total energy + Delta-G solvation = -2678.753507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51605 -37.75113 -35.08688 -32.31773 -31.25555 -30.38528 -28.60299 -26.13839 -25.90783 -24.59842 -22.05165 -21.10840 -20.72740 -19.07905 -17.17066 -16.46819 -15.67194 -15.26407 -14.55751 -13.78463 -13.68862 -13.35807 -12.95383 -12.78764 -12.56307 -12.48746 -12.30583 -11.83523 -11.55549 -11.19143 -10.94391 -10.87130 -10.83121 -10.68193 -10.66175 -10.51630 -10.18802 -10.08130 -9.70259 -9.51739 -8.63151 -8.38582 -7.58589 -7.34605 -6.20372 -4.06048 2.17605 2.29368 3.41638 3.42449 3.58964 3.82656 4.50614 4.59010 5.11206 5.15611 5.33022 5.40686 5.63251 5.67425 5.71797 5.81497 6.00916 6.13309 6.15384 6.18926 6.26317 6.30953 6.38390 6.44832 6.57483 6.66224 6.80863 6.84339 6.93967 7.00352 7.09582 7.14865 7.32937 7.40601 7.53042 7.77403 8.01029 8.23005 8.42434 8.90245 9.65010 11.07467 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.011314 C = 0.009228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.444666 B = 2474.152379 C = 3033.445977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 H 0.080 0.920 4 C -0.097 4.097 5 C -0.145 4.145 6 C 0.089 3.911 7 C -0.167 4.167 8 C -0.094 4.094 9 C -0.159 4.159 10 C 0.024 3.976 11 C 0.076 3.924 12 C -0.120 4.120 13 C -0.143 4.143 14 C -0.585 4.585 15 H 0.052 0.948 16 C 0.029 3.971 17 N -0.908 5.908 18 Si 1.057 2.943 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.286 1.286 22 O -0.314 6.314 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.045 0.955 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.041 0.959 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 -2.360 2.923 7.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.098 0.902 4 C -0.134 4.134 5 C -0.146 4.146 6 C 0.044 3.956 7 C -0.186 4.186 8 C -0.112 4.112 9 C -0.177 4.177 10 C 0.023 3.977 11 C 0.076 3.924 12 C -0.177 4.177 13 C -0.200 4.200 14 C -0.622 4.622 15 H 0.070 0.930 16 C -0.177 4.177 17 N -0.546 5.546 18 Si 0.886 3.114 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.212 1.212 22 O -0.230 6.230 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.826 -0.933 2.945 6.594 hybrid contribution -0.675 -1.228 0.123 1.407 sum -6.501 -2.161 3.067 7.506 Atomic orbital electron populations 1.21833 0.93040 1.02844 1.02413 1.23433 0.94777 0.95633 0.84630 0.90174 1.21805 0.94222 0.99186 0.98142 1.20262 0.97838 1.04323 0.92196 1.19539 0.86872 0.95715 0.93438 1.19898 0.93439 1.06803 0.98421 1.20652 0.96518 0.99016 0.95026 1.21056 0.99974 1.03672 0.92992 1.19877 0.89936 0.90161 0.97728 1.17439 0.92061 0.95910 0.87006 1.21709 0.98982 0.97540 0.99495 1.22034 1.00493 0.97253 1.00243 1.21732 1.12742 0.95889 1.31853 0.92982 1.25601 0.92923 1.02552 0.96652 1.70694 1.33856 1.29749 1.20283 0.83723 0.75640 0.76026 0.75987 1.21442 1.21537 1.21218 1.86785 1.34828 1.63024 1.38331 0.91822 0.92044 0.90621 0.87502 0.90737 0.87037 0.86539 0.86124 0.93625 0.95334 0.93587 0.91533 0.96053 0.93943 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.58 37.16 0.36 -1.55 16 2 C 0.07 1.24 4.27 -25.83 -0.11 1.13 16 3 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.10 -1.90 5.10 -26.52 -0.14 -2.03 16 5 C -0.15 -3.25 5.57 -104.10 -0.58 -3.83 16 6 C 0.09 1.91 7.03 -38.95 -0.27 1.64 16 7 C -0.17 -3.34 10.06 -39.30 -0.40 -3.73 16 8 C -0.09 -1.84 10.02 -39.67 -0.40 -2.24 16 9 C -0.16 -3.45 7.47 -39.52 -0.30 -3.75 16 10 C 0.02 0.55 3.43 -104.76 -0.36 0.19 16 11 C 0.08 1.79 0.52 -156.81 -0.08 1.70 16 12 C -0.12 -2.48 8.18 37.16 0.30 -2.18 16 13 C -0.14 -3.25 6.81 37.16 0.25 -3.00 16 14 C -0.58 -15.05 5.84 -34.44 -0.20 -15.25 16 15 H 0.05 1.34 7.72 -52.49 -0.41 0.94 16 16 C 0.03 0.79 5.12 -17.82 -0.09 0.70 16 17 N -0.91 -26.02 12.59 55.43 0.70 -25.32 16 18 Si 1.06 24.36 29.91 -169.99 -5.08 19.27 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 O -0.31 -6.29 10.83 -20.16 -0.22 -6.51 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.11 2.26 6.65 -51.93 -0.35 1.92 16 27 H 0.07 1.35 7.19 -51.93 -0.37 0.97 16 28 H 0.11 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 30 H 0.12 2.52 5.93 -52.49 -0.31 2.21 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.92 6.29 -51.93 -0.33 0.59 16 34 H 0.07 1.65 5.06 -51.93 -0.26 1.39 16 35 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.29 7.91 3.16 -40.82 -0.13 7.78 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -29.24 286.32 -7.44 -36.69 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.15 Total: 3.76 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: -2.01 Total: -32.20 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.70 Total: -25.32 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.22 Total: -6.51 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.08 Total: 19.27 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.24 -7.44 -36.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.681 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds