Wall clock time and date at job start Mon Mar 30 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.66581 * 2 1 4 4 C 1.54699 * 110.75003 * 236.77782 * 2 1 3 5 5 C 1.51645 * 101.94607 * 216.25838 * 4 2 1 6 6 C 1.38931 * 107.04168 * 15.36022 * 5 4 2 7 7 C 1.39240 * 118.87991 * 181.22285 * 6 5 4 8 8 C 1.37982 * 120.23530 * 359.43482 * 7 6 5 9 9 C 1.38238 * 120.35110 * 359.97438 * 8 7 6 10 10 C 1.37699 * 132.17737 * 195.61286 * 5 4 2 11 11 C 1.50701 * 120.00838 * 359.14098 * 10 5 4 12 12 C 1.53006 * 109.47022 * 295.65213 * 11 10 5 13 13 C 1.53002 * 109.46689 * 175.65597 * 11 10 5 14 14 C 1.50700 * 109.47118 * 55.65312 * 11 10 5 15 15 H 1.07994 * 119.99605 * 243.21911 * 14 11 10 16 16 C 1.37882 * 119.99771 * 63.22551 * 14 11 10 17 17 N 1.31507 * 120.00002 * 352.62845 * 16 14 11 18 18 Si 1.86798 * 119.99483 * 172.35240 * 16 14 11 19 19 H 1.48499 * 109.47121 * 270.27395 * 18 16 14 20 20 H 1.48492 * 109.47311 * 30.27529 * 18 16 14 21 21 H 1.48505 * 109.47015 * 150.27570 * 18 16 14 22 22 O 1.36133 * 111.21712 * 1.51972 * 6 5 4 23 23 H 1.08998 * 109.47016 * 183.21542 * 1 2 3 24 24 H 1.08993 * 109.46921 * 303.22072 * 1 2 3 25 25 H 1.09004 * 109.46553 * 63.22230 * 1 2 3 26 26 H 1.09003 * 110.93694 * 98.10112 * 4 2 1 27 27 H 1.08994 * 110.93933 * 334.42543 * 4 2 1 28 28 H 1.08003 * 119.88525 * 179.41012 * 7 6 5 29 29 H 1.07999 * 119.82074 * 180.02562 * 8 7 6 30 30 H 1.07994 * 120.11775 * 180.20649 * 9 8 7 31 31 H 1.08997 * 109.46446 * 186.83901 * 12 11 10 32 32 H 1.09002 * 109.47186 * 306.83679 * 12 11 10 33 33 H 1.08997 * 109.47078 * 66.84008 * 12 11 10 34 34 H 1.08996 * 109.47063 * 303.89806 * 13 11 10 35 35 H 1.09001 * 109.47405 * 63.90263 * 13 11 10 36 36 H 1.09000 * 109.46950 * 183.90270 * 13 11 10 37 37 H 0.97006 * 120.00347 * 354.80513 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7926 -1.2102 5 6 3.3081 -1.4552 -0.6204 6 6 3.1997 -1.3585 0.7613 7 6 4.2229 -1.8720 1.5537 8 6 5.3176 -2.4760 0.9697 9 6 5.4083 -2.5772 -0.4060 10 6 4.3971 -2.0663 -1.2008 11 6 4.4906 -2.1731 -2.7011 12 6 3.3558 -3.0578 -3.2211 13 6 5.8364 -2.7913 -3.0853 14 6 4.3764 -0.7995 -3.3106 15 1 3.5456 -0.5640 -3.9590 16 6 5.3328 0.1562 -3.0403 17 7 6.2625 -0.0798 -2.1407 18 14 5.3123 1.7833 -3.9577 19 1 6.1277 1.6653 -5.1932 20 1 3.9143 2.1305 -4.3186 21 1 5.8786 2.8476 -3.0906 22 8 2.0385 -0.7468 1.1227 23 1 -0.3633 -1.0260 0.0576 24 1 -0.3633 0.5630 0.8597 25 1 -0.3632 0.4630 -0.9175 26 1 2.3503 -0.1212 -2.0246 27 1 1.3575 -1.5380 -1.5463 28 1 4.1599 -1.7971 2.6293 29 1 6.1072 -2.8723 1.5908 30 1 6.2651 -3.0536 -0.8589 31 1 3.4928 -3.2345 -4.2879 32 1 3.3654 -4.0101 -2.6909 33 1 2.4010 -2.5590 -3.0551 34 1 6.6442 -2.1989 -2.6560 35 1 5.8904 -3.8106 -2.7029 36 1 5.9332 -2.8050 -4.1709 37 1 6.2322 -0.8937 -1.6138 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:46 Heat of formation + Delta-G solvation = -32.723477 kcal Electronic energy + Delta-G solvation = -18855.606383 eV Core-core repulsion = 16176.214767 eV Total energy + Delta-G solvation = -2679.391616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07122 -39.40181 -36.77076 -33.84803 -33.08904 -31.86721 -30.22215 -27.88264 -27.34136 -26.55046 -23.66818 -22.60987 -22.27539 -20.85485 -19.01284 -17.97454 -17.31501 -16.82325 -16.06235 -15.64647 -15.40131 -14.88685 -14.71635 -14.37504 -14.09361 -13.98402 -13.68255 -13.20381 -12.93347 -12.81152 -12.73406 -12.63633 -12.52916 -12.47431 -12.36010 -11.98081 -11.92127 -11.67264 -11.42307 -11.20170 -10.48218 -10.37635 -9.29366 -8.97230 -8.23700 -6.11969 0.55768 0.66370 1.54583 1.60222 1.76506 2.36289 2.63245 2.96858 3.33213 3.71712 3.77365 4.05225 4.10228 4.24616 4.32526 4.40969 4.55701 4.59044 4.59340 4.72336 4.79881 4.82395 4.88587 4.90600 4.99418 5.08985 5.18472 5.23534 5.25051 5.34559 5.44876 5.53339 5.61921 5.73768 5.86189 6.02490 6.28856 6.37617 6.47905 6.88506 7.65142 9.04131 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.011314 C = 0.009228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.444666 B = 2474.152379 C = 3033.445977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.069 3.931 3 H 0.076 0.924 4 C -0.093 4.093 5 C -0.172 4.172 6 C 0.074 3.926 7 C -0.171 4.171 8 C -0.090 4.090 9 C -0.177 4.177 10 C 0.003 3.997 11 C 0.065 3.935 12 C -0.114 4.114 13 C -0.134 4.134 14 C -0.580 4.580 15 H 0.045 0.955 16 C -0.014 4.014 17 N -0.944 5.944 18 Si 1.092 2.908 19 H -0.280 1.280 20 H -0.271 1.271 21 H -0.295 1.295 22 O -0.319 6.319 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.139 0.861 29 H 0.152 0.848 30 H 0.121 0.879 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 -2.492 3.464 8.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.013 3.987 3 H 0.094 0.906 4 C -0.130 4.130 5 C -0.172 4.172 6 C 0.029 3.971 7 C -0.190 4.190 8 C -0.108 4.108 9 C -0.195 4.195 10 C 0.002 3.998 11 C 0.065 3.935 12 C -0.171 4.171 13 C -0.192 4.192 14 C -0.617 4.617 15 H 0.064 0.936 16 C -0.215 4.215 17 N -0.584 5.584 18 Si 0.917 3.083 19 H -0.206 1.206 20 H -0.196 1.196 21 H -0.222 1.222 22 O -0.234 6.234 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.156 0.844 29 H 0.170 0.830 30 H 0.139 0.861 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.012 -1.077 3.473 7.899 hybrid contribution -0.320 -1.230 -0.013 1.271 sum -7.332 -2.307 3.460 8.429 Atomic orbital electron populations 1.21836 0.89480 1.03649 1.04268 1.23655 0.97446 0.94696 0.82890 0.90596 1.21774 0.93813 0.99115 0.98303 1.20611 0.98634 1.04808 0.93195 1.19864 0.87667 0.96067 0.93485 1.20315 0.92938 1.05852 0.99856 1.21041 0.97202 0.97976 0.94567 1.21228 0.99810 1.04340 0.94160 1.19908 0.90931 0.91434 0.97494 1.17528 0.93004 0.95278 0.87718 1.21636 0.98100 0.97604 0.99803 1.21920 0.99578 0.98037 0.99682 1.21942 1.11870 0.97019 1.30911 0.93641 1.26577 0.92918 1.05091 0.96931 1.70742 1.35289 1.30503 1.21868 0.83261 0.76637 0.73145 0.75236 1.20599 1.19582 1.22198 1.86777 1.34288 1.63083 1.39278 0.91498 0.90410 0.88568 0.89601 0.89498 0.84355 0.83041 0.86076 0.93125 0.94143 0.93382 0.93808 0.93912 0.94456 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.58 71.98 0.69 -2.53 16 2 C 0.07 2.31 4.27 31.18 0.13 2.44 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 4 C -0.09 -3.60 5.10 30.73 0.16 -3.44 16 5 C -0.17 -7.62 5.57 -19.52 -0.11 -7.73 16 6 C 0.07 3.11 7.03 22.68 0.16 3.27 16 7 C -0.17 -6.54 10.06 22.45 0.23 -6.31 16 8 C -0.09 -3.38 10.02 22.21 0.22 -3.16 16 9 C -0.18 -7.62 7.47 22.31 0.17 -7.46 16 10 C 0.00 0.14 3.43 -19.95 -0.07 0.07 16 11 C 0.07 3.04 0.52 -53.67 -0.03 3.01 16 12 C -0.11 -4.62 8.18 71.98 0.59 -4.03 16 13 C -0.13 -6.14 6.81 71.98 0.49 -5.65 16 14 C -0.58 -29.92 5.84 25.60 0.15 -29.77 16 15 H 0.05 2.35 7.72 -2.91 -0.02 2.32 16 16 C -0.01 -0.75 5.12 84.66 0.43 -0.32 16 17 N -0.94 -54.84 12.59 21.45 0.27 -54.57 16 18 Si 1.09 49.22 29.91 68.60 2.05 51.27 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 22 O -0.32 -12.31 10.83 -95.06 -1.03 -13.34 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.09 3.64 6.65 -2.39 -0.02 3.63 16 27 H 0.09 3.05 7.19 -2.39 -0.02 3.03 16 28 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.12 5.05 5.93 -2.91 -0.02 5.04 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.88 6.29 -2.39 -0.02 1.86 16 34 H 0.04 2.19 5.06 -2.39 -0.01 2.18 16 35 H 0.04 1.71 7.57 -2.39 -0.02 1.69 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.29 16.02 3.16 -92.70 -0.29 15.72 16 Total: -1.00 -62.24 286.32 6.03 -56.21 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.53 Total: 22.05 kcal Atomic # 6 Polarization: -64.82 SS G_CDS: 3.21 Total: -61.61 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.27 Total: -54.57 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.03 Total: -13.34 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.27 kcal Total: -62.24 6.03 -56.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.483 kcal (2) G-P(sol) polarization free energy of solvation -62.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds