Wall clock time and date at job start Mon Mar 30 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47610 * 2 1 4 4 C 1.50708 * 109.46387 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99946 * 122.97667 * 4 2 1 6 6 C 1.37876 * 120.00332 * 302.97191 * 4 2 1 7 7 N 1.31513 * 120.00180 * 183.91952 * 6 4 2 8 8 Si 1.86805 * 119.99832 * 3.92313 * 6 4 2 9 9 H 1.48502 * 109.47245 * 91.99248 * 8 6 4 10 10 H 1.48497 * 109.46953 * 211.99698 * 8 6 4 11 11 H 1.48504 * 109.46995 * 331.99108 * 8 6 4 12 12 C 1.50696 * 109.47357 * 120.00663 * 2 1 3 13 13 C 1.38159 * 120.06769 * 125.40910 * 12 2 1 14 14 C 1.38136 * 119.99810 * 179.74283 * 13 12 2 15 15 C 1.38546 * 120.32986 * 0.53132 * 14 13 12 16 16 C 1.38123 * 119.88241 * 359.74459 * 15 14 13 17 17 C 1.38608 * 120.06429 * 305.67923 * 12 2 1 18 18 O 1.35905 * 119.94598 * 0.02562 * 17 12 2 19 19 C 1.51364 * 109.78264 * 179.97438 * 16 15 14 20 20 C 1.54348 * 105.16240 * 342.82637 * 19 16 15 21 21 C 1.51381 * 130.35359 * 179.72815 * 15 14 13 22 22 H 1.09009 * 109.46607 * 307.83799 * 1 2 3 23 23 H 1.08996 * 109.47615 * 67.83176 * 1 2 3 24 24 H 1.08992 * 109.47641 * 187.84047 * 1 2 3 25 25 H 1.08997 * 109.47574 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47043 * 300.00257 * 3 2 1 27 27 H 1.08998 * 109.46581 * 60.00193 * 3 2 1 28 28 H 0.96999 * 120.00028 * 180.02562 * 7 6 4 29 29 H 1.08003 * 119.99946 * 359.97040 * 13 12 2 30 30 H 1.07997 * 119.83592 * 180.27213 * 14 13 12 31 31 H 0.96698 * 114.00420 * 89.99924 * 18 17 12 32 32 H 1.09000 * 110.30388 * 101.74645 * 19 16 15 33 33 H 1.08997 * 110.30399 * 223.90098 * 19 16 15 34 34 H 1.09010 * 110.82590 * 268.10479 * 20 19 16 35 35 H 1.09003 * 110.99496 * 144.63560 * 20 19 16 36 36 H 1.08996 * 110.30353 * 316.13099 * 21 15 14 37 37 H 1.09005 * 110.30440 * 78.28932 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6921 -0.2006 -1.9169 6 6 1.6492 -2.0112 -1.4803 7 7 2.1476 -2.6569 -2.5119 8 14 0.4224 -2.8563 -0.3532 9 1 -0.9519 -2.6577 -0.8797 10 1 0.7245 -4.3090 -0.2933 11 1 0.5194 -2.2740 1.0094 12 6 2.0324 -0.7105 1.2303 13 6 2.9163 -1.7653 1.1081 14 6 3.3800 -2.4121 2.2371 15 6 2.9547 -2.0160 3.4948 16 6 2.0667 -0.9657 3.6217 17 6 1.6042 -0.3107 2.4865 18 8 0.7301 0.7227 2.6083 19 6 1.7588 -0.7292 5.0847 20 6 2.2081 -2.0180 5.8053 21 6 3.3055 -2.5581 4.8640 22 1 -0.3633 0.6305 0.8117 23 1 -0.3634 0.3877 -0.9516 24 1 -0.3634 -1.0180 0.1402 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 1.8779 -3.5719 -2.6877 29 1 3.2475 -2.0817 0.1300 30 1 4.0743 -3.2335 2.1388 31 1 -0.1992 0.4558 2.5931 32 1 2.3213 0.1275 5.4559 33 1 0.6896 -0.5703 5.2253 34 1 1.3827 -2.7256 5.8846 35 1 2.6184 -1.7923 6.7896 36 1 3.2925 -3.6479 4.8540 37 1 4.2843 -2.1935 5.1758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260037210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:43 Heat of formation + Delta-G solvation = -13.261868 kcal Electronic energy + Delta-G solvation = -18784.483882 eV Core-core repulsion = 16105.936185 eV Total energy + Delta-G solvation = -2678.547697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.12069 -37.37501 -35.91078 -33.73106 -31.79570 -29.64130 -28.08860 -26.57711 -26.45075 -25.08169 -21.98752 -20.85516 -20.49366 -18.80721 -17.34887 -16.47738 -15.67057 -15.52046 -14.78567 -14.31237 -14.19288 -13.24839 -13.11288 -12.91473 -12.68916 -12.49391 -12.30938 -11.96675 -11.83755 -11.24699 -11.06927 -11.04157 -10.95205 -10.76639 -10.43616 -10.28582 -10.10479 -9.96833 -9.74584 -9.12696 -8.85278 -8.52764 -7.84964 -7.44255 -6.14535 -4.13649 1.94858 2.04281 3.27387 3.38832 3.41800 4.29278 4.37589 4.71772 4.80439 4.97217 5.10328 5.15164 5.48661 5.57537 5.77069 5.86151 5.89211 5.94234 5.97586 6.07949 6.20198 6.27732 6.34384 6.43659 6.51528 6.59711 6.65383 6.81040 6.82289 6.87184 7.07729 7.16438 7.27886 7.30364 7.51694 7.64463 7.87543 8.27033 8.50072 8.91367 9.48125 10.96981 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.010251 C = 0.008790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.809829 B = 2730.813495 C = 3184.851247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.117 4.117 4 C -0.509 4.509 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.289 1.289 10 H -0.301 1.301 11 H -0.244 1.244 12 C -0.054 4.054 13 C -0.093 4.093 14 C -0.126 4.126 15 C -0.113 4.113 16 C -0.136 4.136 17 C 0.098 3.902 18 O -0.493 6.493 19 C -0.068 4.068 20 C -0.121 4.121 21 C -0.076 4.076 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.264 0.736 29 H 0.155 0.845 30 H 0.112 0.888 31 H 0.374 0.626 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.390 1.435 13.819 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.071 3.929 3 C -0.174 4.174 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.533 5.533 8 Si 0.704 3.296 9 H -0.216 1.216 10 H -0.229 1.229 11 H -0.169 1.169 12 C -0.055 4.055 13 C -0.111 4.111 14 C -0.144 4.144 15 C -0.113 4.113 16 C -0.137 4.137 17 C 0.054 3.946 18 O -0.303 6.303 19 C -0.105 4.105 20 C -0.158 4.158 21 C -0.113 4.113 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.173 0.827 30 H 0.130 0.870 31 H 0.230 0.770 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.867 1.612 13.742 13.864 hybrid contribution -1.155 -0.999 0.326 1.562 sum -2.022 0.613 14.068 14.226 Atomic orbital electron populations 1.22353 0.98184 0.99251 1.00720 1.17503 0.91559 0.93009 0.90867 1.21652 0.99945 0.95895 0.99919 1.20945 1.30020 0.97578 1.06128 0.90436 1.25041 0.95483 0.97160 0.94851 1.69911 1.43280 1.11764 1.28347 0.87335 0.81346 0.77727 0.83224 1.21630 1.22905 1.16871 1.20828 0.95773 0.94606 0.94284 1.21594 0.95650 0.94317 0.99530 1.20704 1.01336 1.00965 0.91384 1.20268 0.99139 0.97621 0.94260 1.20664 1.01174 0.97386 0.94452 1.18002 0.95590 0.90078 0.90909 1.84820 1.18341 1.31638 1.95544 1.20824 1.00941 0.97728 0.91050 1.22286 0.98437 0.97103 0.97998 1.20949 0.98724 1.00143 0.91453 0.93861 0.92493 0.94640 0.93983 0.93567 0.93507 0.92575 0.82745 0.87023 0.77029 0.90893 0.91629 0.91409 0.91088 0.91359 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 7.27 37.16 0.27 -2.88 16 2 C 0.07 1.64 0.48 -156.81 -0.08 1.56 16 3 C -0.12 -2.46 8.24 37.16 0.31 -2.15 16 4 C -0.51 -13.72 7.49 -34.44 -0.26 -13.98 16 5 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 6 C 0.08 2.12 4.08 -17.82 -0.07 2.05 16 7 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 8 Si 0.87 21.62 21.97 -169.99 -3.73 17.89 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 11 H -0.24 -5.74 4.44 56.52 0.25 -5.49 16 12 C -0.05 -1.20 2.56 -104.52 -0.27 -1.46 16 13 C -0.09 -2.10 6.58 -39.65 -0.26 -2.36 16 14 C -0.13 -2.46 10.04 -39.51 -0.40 -2.86 16 15 C -0.11 -2.01 6.14 -104.22 -0.64 -2.65 16 16 C -0.14 -2.46 6.11 -104.06 -0.64 -3.10 16 17 C 0.10 1.95 6.18 -39.17 -0.24 1.71 16 18 O -0.49 -8.72 10.10 -19.44 -0.20 -8.91 16 19 C -0.07 -0.96 6.71 -26.85 -0.18 -1.14 16 20 C -0.12 -1.44 7.08 -25.32 -0.18 -1.62 16 21 C -0.08 -1.02 6.77 -26.85 -0.18 -1.21 16 22 H 0.04 0.77 5.29 -51.92 -0.27 0.50 16 23 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 24 H 0.04 0.78 2.92 -51.93 -0.15 0.63 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.92 6.61 -51.93 -0.34 0.57 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.16 3.85 5.43 -52.48 -0.28 3.56 16 30 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.37 5.36 7.69 45.56 0.35 5.71 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 275.96 15.07 4.16 4.16 Total: -1.00 -30.01 275.96 -6.45 -36.46 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.64 Total: 6.20 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: -2.81 Total: -30.07 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.77 Total: -25.73 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.20 Total: -8.91 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -3.73 Total: 17.89 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.01 -6.45 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.194 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds