Wall clock time and date at job start Mon Mar 30 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47610 * 2 1 4 4 C 1.50708 * 109.46387 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99946 * 122.97667 * 4 2 1 6 6 C 1.37876 * 120.00332 * 302.97191 * 4 2 1 7 7 N 1.31513 * 120.00180 * 183.91952 * 6 4 2 8 8 Si 1.86805 * 119.99832 * 3.92313 * 6 4 2 9 9 H 1.48502 * 109.47245 * 91.99248 * 8 6 4 10 10 H 1.48497 * 109.46953 * 211.99698 * 8 6 4 11 11 H 1.48504 * 109.46995 * 331.99108 * 8 6 4 12 12 C 1.50696 * 109.47357 * 120.00663 * 2 1 3 13 13 C 1.38159 * 120.06769 * 125.40910 * 12 2 1 14 14 C 1.38136 * 119.99810 * 179.74283 * 13 12 2 15 15 C 1.38546 * 120.32986 * 0.53132 * 14 13 12 16 16 C 1.38123 * 119.88241 * 359.74459 * 15 14 13 17 17 C 1.38608 * 120.06429 * 305.67923 * 12 2 1 18 18 O 1.35905 * 119.94598 * 0.02562 * 17 12 2 19 19 C 1.51364 * 109.78264 * 179.97438 * 16 15 14 20 20 C 1.54348 * 105.16240 * 342.82637 * 19 16 15 21 21 C 1.51381 * 130.35359 * 179.72815 * 15 14 13 22 22 H 1.09009 * 109.46607 * 307.83799 * 1 2 3 23 23 H 1.08996 * 109.47615 * 67.83176 * 1 2 3 24 24 H 1.08992 * 109.47641 * 187.84047 * 1 2 3 25 25 H 1.08997 * 109.47574 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47043 * 300.00257 * 3 2 1 27 27 H 1.08998 * 109.46581 * 60.00193 * 3 2 1 28 28 H 0.96999 * 120.00028 * 180.02562 * 7 6 4 29 29 H 1.08003 * 119.99946 * 359.97040 * 13 12 2 30 30 H 1.07997 * 119.83592 * 180.27213 * 14 13 12 31 31 H 0.96698 * 114.00420 * 89.99924 * 18 17 12 32 32 H 1.09000 * 110.30388 * 101.74645 * 19 16 15 33 33 H 1.08997 * 110.30399 * 223.90098 * 19 16 15 34 34 H 1.09010 * 110.82590 * 268.10479 * 20 19 16 35 35 H 1.09003 * 110.99496 * 144.63560 * 20 19 16 36 36 H 1.08996 * 110.30353 * 316.13099 * 21 15 14 37 37 H 1.09005 * 110.30440 * 78.28932 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6921 -0.2006 -1.9169 6 6 1.6492 -2.0112 -1.4803 7 7 2.1476 -2.6569 -2.5119 8 14 0.4224 -2.8563 -0.3532 9 1 -0.9519 -2.6577 -0.8797 10 1 0.7245 -4.3090 -0.2933 11 1 0.5194 -2.2740 1.0094 12 6 2.0324 -0.7105 1.2303 13 6 2.9163 -1.7653 1.1081 14 6 3.3800 -2.4121 2.2371 15 6 2.9547 -2.0160 3.4948 16 6 2.0667 -0.9657 3.6217 17 6 1.6042 -0.3107 2.4865 18 8 0.7301 0.7227 2.6083 19 6 1.7588 -0.7292 5.0847 20 6 2.2081 -2.0180 5.8053 21 6 3.3055 -2.5581 4.8640 22 1 -0.3633 0.6305 0.8117 23 1 -0.3634 0.3877 -0.9516 24 1 -0.3634 -1.0180 0.1402 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 1.8779 -3.5719 -2.6877 29 1 3.2475 -2.0817 0.1300 30 1 4.0743 -3.2335 2.1388 31 1 -0.1992 0.4558 2.5931 32 1 2.3213 0.1275 5.4559 33 1 0.6896 -0.5703 5.2253 34 1 1.3827 -2.7256 5.8846 35 1 2.6184 -1.7923 6.7896 36 1 3.2925 -3.6479 4.8540 37 1 4.2843 -2.1935 5.1758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260037210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:43 Heat of formation + Delta-G solvation = -32.925313 kcal Electronic energy + Delta-G solvation = -18785.336553 eV Core-core repulsion = 16105.936185 eV Total energy + Delta-G solvation = -2679.400368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.57469 -38.75368 -37.46558 -35.22251 -33.85995 -30.97859 -29.46082 -28.21458 -27.85586 -27.06439 -23.40066 -22.39369 -21.64028 -20.59556 -18.82976 -18.27945 -17.28950 -16.77970 -16.41676 -15.82284 -15.66921 -14.96182 -14.82922 -14.61173 -14.20504 -14.02837 -13.66519 -13.40416 -13.26469 -12.82390 -12.59681 -12.41496 -12.27744 -12.08089 -12.00030 -11.99275 -11.84854 -11.60238 -11.40538 -10.89128 -10.74365 -10.53266 -9.32427 -8.98123 -8.32228 -6.33507 0.44330 0.53499 1.27809 1.36695 1.42191 2.30005 2.80424 3.03237 3.48202 3.59113 3.75558 4.15087 4.22757 4.30501 4.36279 4.45345 4.58100 4.61502 4.79692 4.82122 4.90251 4.93351 4.97804 5.01316 5.10517 5.11772 5.13556 5.26376 5.35488 5.38538 5.47976 5.54229 5.62748 5.70952 5.77481 5.99153 6.16453 6.35283 6.74024 6.94269 7.31718 8.83445 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.010251 C = 0.008790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.809829 B = 2730.813495 C = 3184.851247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 C -0.110 4.110 4 C -0.506 4.506 5 H 0.033 0.967 6 C 0.034 3.966 7 N -0.945 5.945 8 Si 0.929 3.071 9 H -0.286 1.286 10 H -0.313 1.313 11 H -0.219 1.219 12 C -0.080 4.080 13 C -0.122 4.122 14 C -0.135 4.135 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.099 3.901 18 O -0.492 6.492 19 C -0.068 4.068 20 C -0.112 4.112 21 C -0.076 4.076 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.263 0.737 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.392 0.608 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 1.794 18.131 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.066 3.934 3 C -0.167 4.167 4 C -0.544 4.544 5 H 0.051 0.949 6 C -0.164 4.164 7 N -0.585 5.585 8 Si 0.759 3.241 9 H -0.213 1.213 10 H -0.242 1.242 11 H -0.143 1.143 12 C -0.081 4.081 13 C -0.140 4.140 14 C -0.153 4.153 15 C -0.112 4.112 16 C -0.141 4.141 17 C 0.054 3.946 18 O -0.305 6.305 19 C -0.105 4.105 20 C -0.149 4.149 21 C -0.113 4.113 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.143 0.857 31 H 0.250 0.750 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.185 2.001 18.072 18.313 hybrid contribution -0.639 -1.032 -1.007 1.577 sum -2.823 0.968 17.065 17.324 Atomic orbital electron populations 1.22289 0.96503 0.99525 1.01990 1.17490 0.92904 0.93445 0.89555 1.21586 0.99063 0.95201 1.00884 1.21155 1.28616 0.97682 1.06915 0.94861 1.25649 0.97101 0.97722 0.95905 1.70049 1.45543 1.12169 1.30770 0.86437 0.78917 0.75849 0.82935 1.21332 1.24230 1.14295 1.20651 0.97214 0.95390 0.94878 1.21324 0.97663 0.96079 0.98920 1.20858 1.01622 1.01239 0.91632 1.20810 0.97850 0.97206 0.95321 1.21197 1.00135 0.96487 0.96252 1.17957 0.95904 0.90231 0.90477 1.84763 1.19361 1.31001 1.95344 1.20959 1.02180 0.99299 0.88048 1.22325 0.98049 0.95863 0.98672 1.21101 1.00238 1.01044 0.88936 0.90060 0.93125 0.95392 0.95372 0.93475 0.91469 0.92758 0.86675 0.85712 0.74985 0.89851 0.90168 0.90602 0.88029 0.90028 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 7.27 71.98 0.52 -5.45 16 2 C 0.07 3.07 0.48 -53.67 -0.03 3.05 16 3 C -0.11 -4.62 8.24 71.98 0.59 -4.02 16 4 C -0.51 -28.63 7.49 25.60 0.19 -28.44 16 5 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 6 C 0.03 1.95 4.08 84.65 0.34 2.29 16 7 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 8 Si 0.93 45.73 21.97 68.60 1.51 47.23 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 10 H -0.31 -15.86 7.11 99.48 0.71 -15.16 16 11 H -0.22 -9.90 4.44 99.48 0.44 -9.46 16 12 C -0.08 -3.51 2.56 -19.80 -0.05 -3.56 16 13 C -0.12 -5.57 6.58 22.23 0.15 -5.42 16 14 C -0.14 -5.18 10.04 22.32 0.22 -4.96 16 15 C -0.11 -3.63 6.14 -19.60 -0.12 -3.75 16 16 C -0.14 -4.54 6.11 -19.50 -0.12 -4.66 16 17 C 0.10 3.65 6.18 22.54 0.14 3.79 16 18 O -0.49 -15.45 10.10 -92.48 -0.93 -16.39 16 19 C -0.07 -1.55 6.71 30.52 0.20 -1.34 16 20 C -0.11 -2.01 7.08 31.51 0.22 -1.79 16 21 C -0.08 -1.71 6.77 30.52 0.21 -1.50 16 22 H 0.08 2.64 5.29 -2.38 -0.01 2.63 16 23 H 0.05 2.09 8.13 -2.39 -0.02 2.07 16 24 H 0.03 1.17 2.92 -2.39 -0.01 1.17 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.51 6.61 -2.39 -0.02 2.49 16 28 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.12 6.11 5.43 -2.91 -0.02 6.09 16 30 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 31 H 0.39 9.36 7.69 -74.06 -0.57 8.80 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -68.24 275.96 3.60 -64.64 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.24 Total: 19.08 kcal Atomic # 6 Polarization: -58.25 SS G_CDS: 2.48 Total: -55.77 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.30 Total: -58.80 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.93 Total: -16.39 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.51 Total: 47.23 kcal Total: -68.24 3.60 -64.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.718 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds