Wall clock time and date at job start Mon Mar 30 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47135 * 2 1 4 4 C 1.50692 * 109.46905 * 239.99731 * 2 1 3 5 5 H 1.08004 * 120.00381 * 237.17296 * 4 2 1 6 6 C 1.37880 * 119.99950 * 57.17877 * 4 2 1 7 7 N 1.31517 * 120.00002 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00022 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47081 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46957 * 120.00088 * 8 6 4 11 11 H 1.48501 * 109.47292 * 240.00204 * 8 6 4 12 12 C 1.50704 * 109.46926 * 120.00125 * 2 1 3 13 13 C 1.38119 * 119.86108 * 239.60754 * 12 2 1 14 14 C 1.38217 * 119.86358 * 179.78333 * 13 12 2 15 15 C 1.38105 * 119.89514 * 0.61319 * 14 13 12 16 16 C 1.38597 * 120.29654 * 359.73223 * 15 14 13 17 17 C 1.37951 * 119.78522 * 359.79516 * 16 15 14 18 18 C 1.50736 * 121.34102 * 180.64307 * 17 16 15 19 19 C 1.52962 * 109.77387 * 342.80390 * 18 17 16 20 20 O 1.43205 * 108.51152 * 49.18776 * 19 18 17 21 21 C 1.42728 * 113.13322 * 289.36890 * 20 19 18 22 22 H 1.08992 * 109.47118 * 169.78931 * 1 2 3 23 23 H 1.08996 * 109.46733 * 49.77972 * 1 2 3 24 24 H 1.09000 * 109.46911 * 289.78545 * 1 2 3 25 25 H 1.09002 * 109.47165 * 64.76932 * 3 2 1 26 26 H 1.09002 * 109.46687 * 184.76162 * 3 2 1 27 27 H 1.08990 * 109.47219 * 304.76450 * 3 2 1 28 28 H 0.96993 * 119.99868 * 179.97438 * 7 6 4 29 29 H 1.07992 * 120.06883 * 0.02562 * 13 12 2 30 30 H 1.07996 * 120.05121 * 180.33821 * 14 13 12 31 31 H 1.08001 * 119.84622 * 179.70694 * 15 14 13 32 32 H 1.09001 * 109.42624 * 102.89803 * 18 17 16 33 33 H 1.09006 * 109.41966 * 222.71452 * 18 17 16 34 34 H 1.08997 * 109.63136 * 289.47925 * 19 18 17 35 35 H 1.09006 * 109.79350 * 168.98606 * 19 18 17 36 36 H 1.09002 * 109.34224 * 291.64401 * 21 20 19 37 37 H 1.09001 * 109.34440 * 172.12143 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6904 -1.5612 -1.1320 6 6 1.6519 -0.2743 -2.4818 7 7 0.8503 0.7614 -2.6017 8 14 2.2750 -1.1545 -4.0071 9 1 3.1564 -2.2796 -3.6039 10 1 1.1219 -1.6810 -4.7806 11 1 3.0427 -0.2023 -4.8492 12 6 2.0324 -0.7105 1.2305 13 6 2.8329 -0.0389 2.1337 14 6 3.2899 -0.6891 3.2645 15 6 2.9551 -2.0113 3.4809 16 6 2.1578 -2.6885 2.5717 17 6 1.6938 -2.0362 1.4482 18 6 0.8128 -2.7345 0.4440 19 6 0.9074 -4.2489 0.6373 20 8 0.7221 -4.5423 2.0266 21 6 1.8228 -4.1330 2.8379 22 1 -0.3633 -1.0113 -0.1822 23 1 -0.3633 0.6636 -0.7847 24 1 -0.3633 0.3479 0.9670 25 1 1.7482 1.9311 0.9296 26 1 3.1267 1.4436 -0.0853 27 1 1.6087 1.9803 -0.8441 28 1 0.5829 1.0684 -3.4821 29 1 3.0980 0.9933 1.9587 30 1 3.9116 -0.1653 3.9755 31 1 3.3165 -2.5200 4.3624 32 1 -0.2199 -2.4151 0.5837 33 1 1.1377 -2.4769 -0.5642 34 1 1.8888 -4.5984 0.3169 35 1 0.1330 -4.7448 0.0519 36 1 2.6899 -4.7527 2.6092 37 1 1.5617 -4.2553 3.8891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260051028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:48 Heat of formation + Delta-G solvation = -37.912277 kcal Electronic energy + Delta-G solvation = -18694.307212 eV Core-core repulsion = 16014.690593 eV Total energy + Delta-G solvation = -2679.616619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.35361 -38.80160 -37.05034 -33.84954 -33.26795 -31.68082 -29.63937 -27.84090 -27.25694 -26.21264 -24.40160 -23.42559 -21.08832 -20.24541 -18.29844 -17.50422 -17.16333 -16.66787 -16.33944 -16.06013 -15.23318 -15.07728 -14.83989 -14.59032 -14.10195 -13.66360 -13.50405 -13.34889 -13.06261 -12.76271 -12.64560 -12.52477 -12.33947 -12.23616 -12.17437 -12.07776 -11.45260 -11.28940 -10.97443 -10.86961 -10.49516 -10.22230 -9.32768 -9.15564 -7.99251 -6.11220 0.58464 0.71266 1.40291 1.45451 1.53494 2.45172 2.94869 3.07435 3.23769 3.91426 3.99431 4.15786 4.25047 4.35154 4.37874 4.52069 4.57903 4.68168 4.79978 4.84260 4.91706 4.98716 5.07631 5.08705 5.09182 5.23600 5.38276 5.41869 5.52861 5.62409 5.66670 5.70468 5.83087 5.90527 6.17061 6.22027 6.27292 6.35644 6.48271 6.89935 7.51822 9.00413 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022313 B = 0.009634 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.564585 B = 2905.598390 C = 3607.007742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.090 3.910 3 C -0.118 4.118 4 C -0.498 4.498 5 H 0.047 0.953 6 C 0.027 3.973 7 N -0.903 5.903 8 Si 0.939 3.061 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.287 1.287 12 C -0.059 4.059 13 C -0.149 4.149 14 C -0.126 4.126 15 C -0.133 4.133 16 C -0.142 4.142 17 C -0.083 4.083 18 C -0.130 4.130 19 C 0.062 3.938 20 O -0.394 6.394 21 C 0.105 3.895 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.009 0.991 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.054 0.946 28 H 0.258 0.742 29 H 0.120 0.880 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 -6.777 9.167 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 C -0.176 4.176 4 C -0.536 4.536 5 H 0.065 0.935 6 C -0.173 4.173 7 N -0.541 5.541 8 Si 0.766 3.234 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.213 1.213 12 C -0.059 4.059 13 C -0.167 4.167 14 C -0.144 4.144 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.083 4.083 18 C -0.166 4.166 19 C -0.015 4.015 20 O -0.313 6.313 21 C 0.029 3.971 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.028 0.972 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.410 -6.764 9.095 11.587 hybrid contribution 0.456 0.326 -1.317 1.432 sum 2.866 -6.438 7.777 10.495 Atomic orbital electron populations 1.21877 0.97312 1.01165 0.97753 1.17204 0.92441 0.91838 0.89533 1.21720 0.98408 0.98484 0.98997 1.21066 1.28403 1.13657 0.90519 0.93470 1.25484 0.95298 0.95647 1.00848 1.69986 1.35153 1.25600 1.23405 0.85796 0.78219 0.78827 0.80585 1.19499 1.20676 1.21306 1.20494 0.95544 0.93938 0.95966 1.21366 0.99402 1.00623 0.95348 1.21302 1.00474 0.95273 0.97352 1.21122 0.99296 0.94810 0.99827 1.20528 1.00191 0.98074 0.95399 1.19478 0.99167 0.93989 0.95650 1.21597 0.98771 0.95093 1.01132 1.22743 1.02162 0.94424 0.82131 1.87963 1.42913 1.81567 1.18831 1.21537 0.89897 0.89183 0.96514 0.93543 0.92136 0.97232 0.95408 0.95532 0.92756 0.93210 0.86178 0.83843 0.83250 0.91325 0.87653 0.92701 0.87201 0.90797 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 7.59 71.98 0.55 -5.40 16 2 C 0.09 4.32 0.48 -53.67 -0.03 4.29 16 3 C -0.12 -5.61 6.88 71.98 0.49 -5.11 16 4 C -0.50 -25.67 5.43 25.60 0.14 -25.53 16 5 H 0.05 2.49 7.04 -2.91 -0.02 2.47 16 6 C 0.03 1.39 5.15 84.65 0.44 1.83 16 7 N -0.90 -48.69 9.54 21.45 0.20 -48.48 16 8 Si 0.94 41.92 29.54 68.60 2.03 43.95 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 C -0.06 -2.58 4.70 -19.82 -0.09 -2.67 16 13 C -0.15 -5.73 8.97 22.24 0.20 -5.53 16 14 C -0.13 -3.93 10.05 22.23 0.22 -3.70 16 15 C -0.13 -3.87 9.67 22.32 0.22 -3.65 16 16 C -0.14 -4.74 5.80 -19.86 -0.12 -4.86 16 17 C -0.08 -3.33 5.51 -19.85 -0.11 -3.44 16 18 C -0.13 -5.08 4.10 29.85 0.12 -4.96 16 19 C 0.06 1.97 6.85 71.97 0.49 2.47 16 20 O -0.39 -12.53 10.80 -148.98 -1.61 -14.14 16 21 C 0.10 2.86 6.66 71.22 0.47 3.33 16 22 H 0.05 2.17 4.59 -2.39 -0.01 2.16 16 23 H 0.06 3.16 6.19 -2.39 -0.01 3.14 16 24 H 0.01 0.40 8.11 -2.39 -0.02 0.38 16 25 H 0.03 1.18 7.21 -2.39 -0.02 1.16 16 26 H 0.03 1.21 7.77 -2.39 -0.02 1.20 16 27 H 0.05 2.81 6.40 -2.39 -0.02 2.79 16 28 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 29 H 0.12 4.48 5.88 -2.91 -0.02 4.47 16 30 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 31 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.07 2.79 6.24 -2.39 -0.01 2.78 16 33 H 0.11 4.68 4.55 -2.38 -0.01 4.67 16 34 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 35 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -57.80 279.94 4.69 -53.11 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.07 Total: 18.51 kcal Atomic # 6 Polarization: -55.95 SS G_CDS: 3.00 Total: -52.95 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.20 Total: -48.48 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.61 Total: -14.14 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -57.80 4.69 -53.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.199 kcal (2) G-P(sol) polarization free energy of solvation -57.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds