Wall clock time and date at job start Mon Mar 30 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47210 * 2 1 4 4 C 1.50694 * 109.47245 * 120.00498 * 2 1 3 5 5 H 1.08005 * 119.99642 * 119.99492 * 4 2 1 6 6 C 1.37870 * 120.00169 * 300.00110 * 4 2 1 7 7 N 1.31521 * 120.00328 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99990 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47101 * 90.00138 * 8 6 4 10 10 H 1.48499 * 109.47432 * 210.00320 * 8 6 4 11 11 H 1.48504 * 109.47208 * 330.00050 * 8 6 4 12 12 C 1.50703 * 109.46799 * 240.00572 * 2 1 3 13 13 C 1.38285 * 120.11951 * 299.99908 * 12 2 1 14 14 C 1.37930 * 120.35471 * 179.59756 * 13 12 2 15 15 C 1.39293 * 120.23975 * 0.09444 * 14 13 12 16 16 C 1.38882 * 118.87016 * 0.13432 * 15 14 13 17 17 C 1.37739 * 120.79467 * 359.66774 * 16 15 14 18 18 C 1.51647 * 107.03272 * 179.45360 * 16 15 14 19 19 C 1.54703 * 101.92225 * 344.50405 * 18 16 15 20 20 C 1.52998 * 110.74867 * 266.98784 * 19 18 16 21 21 C 1.52992 * 110.90881 * 143.70758 * 19 18 16 22 22 O 1.36128 * 129.88196 * 180.56973 * 15 14 13 23 23 H 1.09004 * 109.46938 * 59.99174 * 1 2 3 24 24 H 1.08994 * 109.47450 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46862 * 299.99864 * 1 2 3 26 26 H 0.96998 * 119.99731 * 179.97438 * 7 6 4 27 27 H 1.07996 * 119.82106 * 359.57586 * 13 12 2 28 28 H 1.07994 * 119.87884 * 180.02562 * 14 13 12 29 29 H 1.07996 * 120.01155 * 180.25157 * 17 16 15 30 30 H 1.08999 * 110.93930 * 226.34230 * 18 16 15 31 31 H 1.08999 * 110.93901 * 102.65872 * 18 16 15 32 32 H 1.09001 * 109.47335 * 174.82190 * 20 19 18 33 33 H 1.09007 * 109.47199 * 294.82109 * 20 19 18 34 34 H 1.09003 * 109.47114 * 54.81551 * 20 19 18 35 35 H 1.09007 * 109.47195 * 305.08667 * 21 19 18 36 36 H 1.09005 * 109.46988 * 65.08447 * 21 19 18 37 37 H 1.08997 * 109.47408 * 185.08615 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 2.1373 -0.8600 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9950 3.9071 11 1 0.8492 2.1772 1.4924 12 6 2.0323 -0.7103 -1.2306 13 6 1.6997 -2.0342 -1.4520 14 6 2.1499 -2.6866 -2.5808 15 6 2.9459 -2.0172 -3.5074 16 6 3.2771 -0.6893 -3.2716 17 6 2.8231 -0.0385 -2.1457 18 6 4.1499 -0.2373 -4.4264 19 6 4.5566 -1.5858 -5.0664 20 6 5.8884 -2.0768 -4.4957 21 6 4.6332 -1.4660 -6.5897 22 8 3.4828 -2.4593 -4.6776 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9033 -0.5284 4.4374 27 1 1.0845 -2.5602 -0.7370 28 1 1.8851 -3.7204 -2.7462 29 1 3.0851 0.9956 -1.9769 30 1 5.0253 0.3022 -4.0652 31 1 3.5814 0.3717 -5.1292 32 1 6.1095 -3.0684 -4.8907 33 1 6.6826 -1.3868 -4.7810 34 1 5.8223 -2.1251 -3.4087 35 1 3.6861 -1.0857 -6.9725 36 1 5.4361 -0.7802 -6.8603 37 1 4.8321 -2.4468 -7.0218 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260070037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:49 Heat of formation + Delta-G solvation = -17.180892 kcal Electronic energy + Delta-G solvation = -17743.662769 eV Core-core repulsion = 15064.945130 eV Total energy + Delta-G solvation = -2678.717639 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.97998 -37.75422 -34.24231 -33.57110 -31.62036 -30.90745 -28.63927 -27.54325 -26.09046 -25.03867 -22.55469 -21.53780 -20.56952 -19.36815 -16.80312 -16.66384 -15.71776 -15.54303 -15.09056 -14.35145 -13.85992 -13.85556 -13.21875 -12.95080 -12.77491 -12.60644 -12.43490 -12.22418 -12.12511 -12.08323 -12.01128 -11.70887 -11.15146 -11.07243 -10.91411 -10.47532 -10.21275 -10.09843 -9.92406 -9.37865 -9.10089 -8.57471 -8.31515 -7.37431 -6.08136 -4.07842 1.87636 1.99643 3.26680 3.37032 3.39402 3.46367 4.28831 4.39781 4.55119 4.63545 4.80339 5.07273 5.24933 5.32094 5.38569 5.44902 5.54828 5.65264 5.69177 5.73180 5.81417 5.91672 6.06971 6.10881 6.14095 6.19341 6.33935 6.44742 6.53771 6.71503 6.88985 6.89763 7.04094 7.16890 7.20142 7.59395 7.72061 7.75309 8.51048 8.96409 9.53102 11.04732 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042308 B = 0.005379 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.651217 B = 5204.595091 C = 5238.417809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 H 0.034 0.966 4 C -0.508 4.508 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.267 1.267 12 C -0.050 4.050 13 C -0.074 4.074 14 C -0.139 4.139 15 C 0.077 3.923 16 C -0.177 4.177 17 C -0.081 4.081 18 C -0.097 4.097 19 C 0.101 3.899 20 C -0.162 4.162 21 C -0.139 4.139 22 O -0.304 6.304 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.264 0.736 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 0.600 -16.937 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 H 0.052 0.948 4 C -0.546 4.546 5 H 0.094 0.906 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.192 1.192 12 C -0.051 4.051 13 C -0.092 4.092 14 C -0.158 4.158 15 C 0.033 3.967 16 C -0.178 4.178 17 C -0.099 4.099 18 C -0.134 4.134 19 C 0.063 3.937 20 C -0.220 4.220 21 C -0.196 4.196 22 O -0.220 6.220 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.446 0.405 -16.883 17.236 hybrid contribution -0.484 0.867 0.383 1.065 sum 2.962 1.273 -16.499 16.811 Atomic orbital electron populations 1.22166 0.98405 1.00945 0.98576 1.18280 0.91866 0.96042 0.91506 0.94769 1.20975 1.32037 1.13545 0.88035 0.90560 1.25001 0.95714 0.96614 0.95798 1.69895 1.45608 1.40332 0.97922 0.86840 0.80610 0.83812 0.76852 1.20587 1.22572 1.19181 1.20089 0.95479 0.94051 0.95435 1.20833 0.98798 0.94480 0.95109 1.20222 1.02171 0.99777 0.93611 1.19367 0.97723 0.92472 0.87157 1.20577 1.04734 0.94613 0.97902 1.20251 0.97817 0.99581 0.92291 1.21790 0.99250 0.96955 0.95407 1.22635 0.87266 0.88234 0.95584 1.22181 0.95483 1.01943 1.02343 1.21810 1.02821 1.02826 0.92157 1.86796 1.46990 1.52660 1.35510 0.95093 0.92696 0.94103 0.92622 0.84904 0.86384 0.86504 0.89618 0.89792 0.91642 0.91072 0.91528 0.91625 0.90656 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.49 37.16 0.32 -2.77 16 2 C 0.04 0.98 2.07 -92.92 -0.19 0.78 16 3 H 0.03 0.81 6.94 -51.93 -0.36 0.45 16 4 C -0.51 -14.02 8.82 -34.45 -0.30 -14.32 16 5 H 0.08 2.30 7.85 -52.48 -0.41 1.89 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 8 Si 0.89 21.72 24.37 -169.99 -4.14 17.57 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 12 C -0.05 -1.05 4.74 -104.56 -0.50 -1.55 16 13 C -0.07 -1.46 8.69 -39.68 -0.34 -1.81 16 14 C -0.14 -2.51 10.06 -39.30 -0.40 -2.90 16 15 C 0.08 1.36 6.95 -38.95 -0.27 1.09 16 16 C -0.18 -3.04 6.26 -104.10 -0.65 -3.69 16 17 C -0.08 -1.53 9.66 -39.72 -0.38 -1.91 16 18 C -0.10 -1.27 6.18 -26.52 -0.16 -1.44 16 19 C 0.10 1.26 1.26 -89.73 -0.11 1.15 16 20 C -0.16 -1.85 8.85 37.16 0.33 -1.52 16 21 C -0.14 -1.30 8.96 37.15 0.33 -0.97 16 22 O -0.30 -4.92 10.52 -20.15 -0.21 -5.13 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 1.13 7.40 -51.93 -0.38 0.75 16 25 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 27 H 0.13 2.61 7.59 -52.49 -0.40 2.21 16 28 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.12 2.02 7.95 -52.49 -0.42 1.61 16 30 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 31 H 0.08 0.99 7.91 -51.93 -0.41 0.58 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 35 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -30.47 295.98 -7.08 -37.55 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.53 Total: -0.01 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -2.44 Total: -27.95 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.21 Total: -5.13 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.47 -7.08 -37.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.369 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds