Wall clock time and date at job start Mon Mar 30 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47210 * 2 1 4 4 C 1.50694 * 109.47245 * 120.00498 * 2 1 3 5 5 H 1.08005 * 119.99642 * 119.99492 * 4 2 1 6 6 C 1.37870 * 120.00169 * 300.00110 * 4 2 1 7 7 N 1.31521 * 120.00328 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99990 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47101 * 90.00138 * 8 6 4 10 10 H 1.48499 * 109.47432 * 210.00320 * 8 6 4 11 11 H 1.48504 * 109.47208 * 330.00050 * 8 6 4 12 12 C 1.50703 * 109.46799 * 240.00572 * 2 1 3 13 13 C 1.38285 * 120.11951 * 299.99908 * 12 2 1 14 14 C 1.37930 * 120.35471 * 179.59756 * 13 12 2 15 15 C 1.39293 * 120.23975 * 0.09444 * 14 13 12 16 16 C 1.38882 * 118.87016 * 0.13432 * 15 14 13 17 17 C 1.37739 * 120.79467 * 359.66774 * 16 15 14 18 18 C 1.51647 * 107.03272 * 179.45360 * 16 15 14 19 19 C 1.54703 * 101.92225 * 344.50405 * 18 16 15 20 20 C 1.52998 * 110.74867 * 266.98784 * 19 18 16 21 21 C 1.52992 * 110.90881 * 143.70758 * 19 18 16 22 22 O 1.36128 * 129.88196 * 180.56973 * 15 14 13 23 23 H 1.09004 * 109.46938 * 59.99174 * 1 2 3 24 24 H 1.08994 * 109.47450 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46862 * 299.99864 * 1 2 3 26 26 H 0.96998 * 119.99731 * 179.97438 * 7 6 4 27 27 H 1.07996 * 119.82106 * 359.57586 * 13 12 2 28 28 H 1.07994 * 119.87884 * 180.02562 * 14 13 12 29 29 H 1.07996 * 120.01155 * 180.25157 * 17 16 15 30 30 H 1.08999 * 110.93930 * 226.34230 * 18 16 15 31 31 H 1.08999 * 110.93901 * 102.65872 * 18 16 15 32 32 H 1.09001 * 109.47335 * 174.82190 * 20 19 18 33 33 H 1.09007 * 109.47199 * 294.82109 * 20 19 18 34 34 H 1.09003 * 109.47114 * 54.81551 * 20 19 18 35 35 H 1.09007 * 109.47195 * 305.08667 * 21 19 18 36 36 H 1.09005 * 109.46988 * 65.08447 * 21 19 18 37 37 H 1.08997 * 109.47408 * 185.08615 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 2.1373 -0.8600 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9950 3.9071 11 1 0.8492 2.1772 1.4924 12 6 2.0323 -0.7103 -1.2306 13 6 1.6997 -2.0342 -1.4520 14 6 2.1499 -2.6866 -2.5808 15 6 2.9459 -2.0172 -3.5074 16 6 3.2771 -0.6893 -3.2716 17 6 2.8231 -0.0385 -2.1457 18 6 4.1499 -0.2373 -4.4264 19 6 4.5566 -1.5858 -5.0664 20 6 5.8884 -2.0768 -4.4957 21 6 4.6332 -1.4660 -6.5897 22 8 3.4828 -2.4593 -4.6776 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9033 -0.5284 4.4374 27 1 1.0845 -2.5602 -0.7370 28 1 1.8851 -3.7204 -2.7462 29 1 3.0851 0.9956 -1.9769 30 1 5.0253 0.3022 -4.0652 31 1 3.5814 0.3717 -5.1292 32 1 6.1095 -3.0684 -4.8907 33 1 6.6826 -1.3868 -4.7810 34 1 5.8223 -2.1251 -3.4087 35 1 3.6861 -1.0857 -6.9725 36 1 5.4361 -0.7802 -6.8603 37 1 4.8321 -2.4468 -7.0218 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260070037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:48 Heat of formation + Delta-G solvation = -34.776716 kcal Electronic energy + Delta-G solvation = -17744.425781 eV Core-core repulsion = 15064.945130 eV Total energy + Delta-G solvation = -2679.480651 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20984 -39.20987 -35.96127 -34.72059 -33.56912 -32.24012 -30.12530 -28.35886 -27.28659 -27.06200 -24.19066 -22.92315 -21.67452 -20.96827 -18.67444 -18.09766 -17.17475 -16.84211 -16.53776 -15.99584 -15.15613 -15.00203 -14.80574 -14.44304 -14.11324 -14.06802 -13.85355 -13.64500 -13.51461 -13.18073 -12.98579 -12.86893 -12.83144 -12.48592 -12.12524 -12.05385 -11.77429 -11.66717 -11.40238 -11.22098 -11.07269 -10.71333 -9.73284 -8.82006 -8.27316 -6.31547 0.44975 0.53119 1.33259 1.38287 1.49121 2.30406 2.34437 2.85757 3.08576 3.49917 3.58239 3.88749 4.00474 4.08344 4.19121 4.28870 4.55170 4.57025 4.65150 4.68475 4.71696 4.76185 4.76364 4.85873 4.89004 4.91797 5.08158 5.10993 5.16594 5.25713 5.31171 5.43576 5.49186 5.54847 5.64870 5.80787 5.98755 6.31058 6.40214 6.74681 7.33017 8.89254 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042308 B = 0.005379 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.651217 B = 5204.595091 C = 5238.417809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 H 0.035 0.965 4 C -0.507 4.507 5 H 0.032 0.968 6 C 0.012 3.988 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.300 1.300 11 H -0.245 1.245 12 C -0.078 4.078 13 C -0.087 4.087 14 C -0.146 4.146 15 C 0.075 3.925 16 C -0.178 4.178 17 C -0.088 4.088 18 C -0.094 4.094 19 C 0.091 3.909 20 C -0.161 4.161 21 C -0.134 4.134 22 O -0.315 6.315 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.034 0.966 26 H 0.265 0.735 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.674 2.236 -19.752 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.053 0.947 4 C -0.545 4.545 5 H 0.050 0.950 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.228 1.228 11 H -0.169 1.169 12 C -0.078 4.078 13 C -0.105 4.105 14 C -0.165 4.165 15 C 0.030 3.970 16 C -0.179 4.179 17 C -0.106 4.106 18 C -0.131 4.131 19 C 0.055 3.945 20 C -0.219 4.219 21 C -0.191 4.191 22 O -0.231 6.231 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.637 2.039 -19.733 20.169 hybrid contribution -0.417 0.240 1.147 1.243 sum 3.220 2.278 -18.587 19.001 Atomic orbital electron populations 1.22088 0.96791 1.01329 0.99601 1.18173 0.93217 0.95511 0.90602 0.94717 1.21204 1.30845 1.12259 0.90234 0.95014 1.25868 0.97297 1.00015 0.95295 1.70052 1.47830 1.42615 0.98605 0.85811 0.79083 0.80007 0.77278 1.19236 1.22834 1.16878 1.19982 0.97578 0.94679 0.95608 1.20761 0.99546 0.94436 0.95792 1.20351 1.02229 1.00581 0.93320 1.19540 0.97118 0.92856 0.87465 1.20981 1.04240 0.94434 0.98212 1.20372 0.97408 1.00276 0.92508 1.21953 0.99394 0.97682 0.94070 1.23064 0.86503 0.87204 0.97777 1.22213 0.95924 1.03242 1.00491 1.21851 1.04014 1.03969 0.89288 1.86801 1.48048 1.53808 1.34457 0.92114 0.92818 0.94752 0.92570 0.86086 0.84809 0.85163 0.87761 0.87809 0.91049 0.88117 0.94233 0.91582 0.87767 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 8.49 71.98 0.61 -5.27 16 2 C 0.04 2.04 2.07 -12.29 -0.03 2.01 16 3 H 0.03 1.60 6.94 -2.38 -0.02 1.59 16 4 C -0.51 -28.96 8.82 25.60 0.23 -28.73 16 5 H 0.03 2.03 7.85 -2.91 -0.02 2.01 16 6 C 0.01 0.69 5.45 84.65 0.46 1.16 16 7 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 8 Si 0.95 44.70 24.37 68.60 1.67 46.37 16 9 H -0.27 -11.90 6.87 99.48 0.68 -11.22 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.24 -10.57 6.53 99.48 0.65 -9.92 16 12 C -0.08 -3.29 4.74 -19.82 -0.09 -3.39 16 13 C -0.09 -3.53 8.69 22.21 0.19 -3.34 16 14 C -0.15 -5.29 10.06 22.45 0.23 -5.06 16 15 C 0.07 2.58 6.95 22.68 0.16 2.73 16 16 C -0.18 -5.78 6.26 -19.53 -0.12 -5.91 16 17 C -0.09 -3.21 9.66 22.18 0.21 -2.99 16 18 C -0.09 -2.16 6.18 30.73 0.19 -1.97 16 19 C 0.09 2.02 1.26 -10.22 -0.01 2.01 16 20 C -0.16 -3.25 8.85 71.98 0.64 -2.61 16 21 C -0.13 -1.98 8.96 71.98 0.64 -1.33 16 22 O -0.32 -9.60 10.52 -95.01 -1.00 -10.60 16 23 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 24 H 0.05 2.20 7.40 -2.39 -0.02 2.19 16 25 H 0.03 1.46 3.27 -2.39 -0.01 1.45 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.12 5.03 7.59 -2.91 -0.02 5.01 16 28 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.13 4.30 7.95 -2.91 -0.02 4.28 16 30 H 0.10 2.03 7.92 -2.39 -0.02 2.01 16 31 H 0.10 2.01 7.91 -2.39 -0.02 1.99 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 35 H 0.07 0.99 8.12 -2.38 -0.02 0.97 16 36 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -67.82 295.98 5.24 -62.58 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.96 Total: 13.75 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 3.31 Total: -52.70 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.30 Total: -59.40 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.00 Total: -10.60 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.67 Total: 46.37 kcal Total: -67.82 5.24 -62.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.806 kcal (2) G-P(sol) polarization free energy of solvation -67.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds