Wall clock time and date at job start Mon Mar 30 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99857 * 2 1 4 4 C 1.50701 * 109.47460 * 179.97438 * 3 2 1 5 5 C 1.38237 * 119.99644 * 89.99646 * 4 3 2 6 6 C 1.38231 * 119.99634 * 179.97438 * 5 4 3 7 7 C 1.38242 * 120.00455 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00524 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47214 * 0.02562 * 8 7 6 10 10 C 1.50695 * 109.47495 * 239.99883 * 8 7 6 11 11 H 1.07997 * 120.00499 * 275.49469 * 10 8 7 12 12 C 1.37879 * 119.99595 * 95.48832 * 10 8 7 13 13 N 1.31516 * 120.00475 * 5.95788 * 12 10 8 14 14 Si 1.86805 * 119.99717 * 185.96183 * 12 10 8 15 15 H 1.48504 * 109.46992 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47261 * 119.99662 * 14 12 10 17 17 H 1.48502 * 109.47322 * 239.99990 * 14 12 10 18 18 C 1.53002 * 109.47411 * 119.99679 * 8 7 6 19 19 C 1.52997 * 117.50164 * 185.49490 * 18 8 7 20 20 C 1.52998 * 117.50320 * 254.12268 * 18 8 7 21 21 C 1.38241 * 119.99167 * 0.25163 * 7 6 5 22 22 C 1.38229 * 120.00428 * 359.49447 * 21 7 6 23 23 H 1.08998 * 109.47337 * 300.00038 * 1 2 3 24 24 H 1.08997 * 109.47374 * 60.00059 * 1 2 3 25 25 H 1.09006 * 109.47013 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47323 * 59.99772 * 3 2 1 27 27 H 1.08998 * 109.47267 * 300.00276 * 3 2 1 28 28 H 1.07996 * 120.00314 * 0.02562 * 5 4 3 29 29 H 1.07999 * 120.00112 * 180.02562 * 6 5 4 30 30 H 0.97001 * 119.99805 * 179.97438 * 13 12 10 31 31 H 1.09002 * 115.55676 * 39.80281 * 18 8 7 32 32 H 1.08991 * 117.49822 * 0.02562 * 19 18 8 33 33 H 1.09000 * 117.49776 * 214.98392 * 19 18 8 34 34 H 1.08994 * 117.50394 * 145.01864 * 20 18 8 35 35 H 1.09003 * 117.51878 * 359.97438 * 20 18 8 36 36 H 1.08001 * 119.99421 * 179.72845 * 21 7 6 37 37 H 1.08002 * 120.00219 * 180.24504 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2020 1.1318 -1.1963 6 6 5.5800 1.0233 -1.1957 7 6 6.2687 0.9691 0.0017 8 6 7.7709 0.8502 0.0024 9 1 8.1336 0.8218 -1.0251 10 6 8.1744 -0.4158 0.7133 11 1 8.2692 -0.4244 1.7890 12 6 8.4225 -1.5633 -0.0098 13 7 8.4219 -1.5252 -1.3244 14 14 8.7592 -3.1721 0.8779 15 1 8.7026 -2.9491 2.3450 16 1 7.7350 -4.1751 0.4903 17 1 10.1070 -3.6710 0.5041 18 6 8.3776 2.0555 0.7235 19 6 9.9019 2.1875 0.7195 20 6 9.0503 3.1279 -0.1358 21 6 5.5786 1.0181 1.1986 22 6 4.2010 1.1319 1.1981 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.6641 1.1746 -2.1318 29 1 6.1187 0.9809 -2.1308 30 1 8.5968 -2.3325 -1.8330 31 1 7.8462 2.3860 1.6160 32 1 10.4724 1.4159 0.2027 33 1 10.3733 2.6048 1.6093 34 1 8.9615 4.1638 0.1913 35 1 9.0611 2.9749 -1.2149 36 1 6.1162 0.9713 2.1341 37 1 3.6623 1.1742 2.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260092864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:28 Heat of formation + Delta-G solvation = -8.797944 kcal Electronic energy + Delta-G solvation = -17415.133235 eV Core-core repulsion = 14736.779108 eV Total energy + Delta-G solvation = -2678.354127 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.90858 -37.50850 -36.33741 -33.04991 -31.53683 -30.08588 -28.41953 -26.43489 -24.76688 -23.08012 -21.96005 -21.46403 -20.40899 -18.95675 -16.40910 -16.25831 -15.98475 -15.62095 -15.03415 -14.66194 -14.05896 -13.87213 -13.59402 -13.17275 -12.58133 -12.32225 -12.05332 -11.91399 -11.53881 -11.33375 -11.21053 -10.92173 -10.71301 -10.52888 -10.29531 -10.22712 -9.92096 -9.56412 -9.39785 -9.16543 -8.69982 -8.46528 -8.04866 -7.58390 -6.05960 -4.07213 2.15302 2.29251 3.30044 3.38698 3.42020 4.06035 4.40647 4.79952 4.82333 5.18281 5.23504 5.28801 5.38578 5.44827 5.55064 5.64228 5.64937 5.78656 5.83615 5.92100 5.96034 6.30323 6.33999 6.44985 6.51774 6.52744 6.80996 6.83825 6.95033 7.01226 7.14983 7.29539 7.30970 7.43069 7.58440 7.83346 7.91050 7.99863 8.35389 8.99416 9.55151 11.02437 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.006975 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.025598 B = 4013.115097 C = 4951.194061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.112 3.888 4 C -0.133 4.133 5 C -0.102 4.102 6 C -0.125 4.125 7 C -0.007 4.007 8 C 0.087 3.913 9 H 0.071 0.929 10 C -0.498 4.498 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.888 5.888 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.118 4.118 19 C -0.170 4.170 20 C -0.201 4.201 21 C -0.119 4.119 22 C -0.106 4.106 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 6.707 1.824 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.037 3.963 4 C -0.133 4.133 5 C -0.120 4.120 6 C -0.144 4.144 7 C -0.008 4.008 8 C 0.068 3.932 9 H 0.089 0.911 10 C -0.535 4.535 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.717 3.283 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.136 4.136 19 C -0.207 4.207 20 C -0.238 4.238 21 C -0.138 4.138 22 C -0.124 4.124 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.052 6.421 1.662 11.222 hybrid contribution -0.132 -0.859 0.406 0.959 sum -9.184 5.562 2.068 10.934 Atomic orbital electron populations 1.22709 0.81964 1.02438 0.99531 1.88055 1.18758 1.28263 1.95256 1.21272 0.91015 0.84351 0.99702 1.19211 0.92658 1.07506 0.93975 1.20842 0.94532 1.00276 0.96400 1.21074 0.93279 1.01525 0.98487 1.20774 0.98965 0.89464 0.91591 1.17753 0.85853 0.90947 0.98600 0.91131 1.20921 1.45587 0.93673 0.93336 0.92393 1.24970 0.94676 0.99086 0.94832 1.69907 1.49062 1.28464 1.05081 0.86578 0.77721 0.83874 0.80142 1.19619 1.20937 1.21044 1.22474 0.94095 0.97422 0.99618 1.22700 0.95086 1.01943 1.01004 1.22973 1.07819 0.94906 0.98093 1.20926 0.93001 1.01273 0.98554 1.20838 0.94566 1.00647 0.96368 0.94409 0.94403 0.89919 0.93258 0.93244 0.87493 0.86568 0.92861 0.89872 0.88653 0.90641 0.90623 0.89548 0.86634 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -6.19 10.69 -35.23 -0.38 -6.56 16 3 C 0.11 1.68 6.06 36.01 0.22 1.89 16 4 C -0.13 -2.43 5.51 -104.62 -0.58 -3.01 16 5 C -0.10 -1.96 9.70 -39.58 -0.38 -2.34 16 6 C -0.13 -2.70 9.67 -39.58 -0.38 -3.08 16 7 C -0.01 -0.16 4.77 -104.62 -0.50 -0.66 16 8 C 0.09 2.08 2.23 -92.93 -0.21 1.88 16 9 H 0.07 1.87 6.76 -51.93 -0.35 1.52 16 10 C -0.50 -13.16 7.71 -34.44 -0.27 -13.42 16 11 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 12 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 13 N -0.89 -25.20 12.76 55.43 0.71 -24.50 16 14 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 C -0.12 -2.44 4.93 -90.62 -0.45 -2.88 16 19 C -0.17 -3.28 10.01 -26.73 -0.27 -3.55 16 20 C -0.20 -3.67 10.18 -26.73 -0.27 -3.94 16 21 C -0.12 -2.49 8.67 -39.58 -0.34 -2.83 16 22 C -0.11 -1.98 9.70 -39.59 -0.38 -2.37 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.12 2.50 7.95 -52.49 -0.42 2.08 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.08 1.65 7.44 -51.93 -0.39 1.26 16 32 H 0.09 2.01 8.14 -51.93 -0.42 1.58 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.61 8.08 -51.93 -0.42 1.19 16 36 H 0.12 2.33 7.81 -52.49 -0.41 1.92 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -29.00 315.23 -8.49 -37.49 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.75 Total: 3.61 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -2.80 Total: -31.14 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.71 Total: -24.50 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.38 Total: -6.56 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.00 -8.49 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260092864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.690 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds