Wall clock time and date at job start Mon Mar 30 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99857 * 2 1 4 4 C 1.50701 * 109.47460 * 179.97438 * 3 2 1 5 5 C 1.38237 * 119.99644 * 89.99646 * 4 3 2 6 6 C 1.38231 * 119.99634 * 179.97438 * 5 4 3 7 7 C 1.38242 * 120.00455 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00524 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47214 * 0.02562 * 8 7 6 10 10 C 1.50695 * 109.47495 * 239.99883 * 8 7 6 11 11 H 1.07997 * 120.00499 * 275.49469 * 10 8 7 12 12 C 1.37879 * 119.99595 * 95.48832 * 10 8 7 13 13 N 1.31516 * 120.00475 * 5.95788 * 12 10 8 14 14 Si 1.86805 * 119.99717 * 185.96183 * 12 10 8 15 15 H 1.48504 * 109.46992 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47261 * 119.99662 * 14 12 10 17 17 H 1.48502 * 109.47322 * 239.99990 * 14 12 10 18 18 C 1.53002 * 109.47411 * 119.99679 * 8 7 6 19 19 C 1.52997 * 117.50164 * 185.49490 * 18 8 7 20 20 C 1.52998 * 117.50320 * 254.12268 * 18 8 7 21 21 C 1.38241 * 119.99167 * 0.25163 * 7 6 5 22 22 C 1.38229 * 120.00428 * 359.49447 * 21 7 6 23 23 H 1.08998 * 109.47337 * 300.00038 * 1 2 3 24 24 H 1.08997 * 109.47374 * 60.00059 * 1 2 3 25 25 H 1.09006 * 109.47013 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47323 * 59.99772 * 3 2 1 27 27 H 1.08998 * 109.47267 * 300.00276 * 3 2 1 28 28 H 1.07996 * 120.00314 * 0.02562 * 5 4 3 29 29 H 1.07999 * 120.00112 * 180.02562 * 6 5 4 30 30 H 0.97001 * 119.99805 * 179.97438 * 13 12 10 31 31 H 1.09002 * 115.55676 * 39.80281 * 18 8 7 32 32 H 1.08991 * 117.49822 * 0.02562 * 19 18 8 33 33 H 1.09000 * 117.49776 * 214.98392 * 19 18 8 34 34 H 1.08994 * 117.50394 * 145.01864 * 20 18 8 35 35 H 1.09003 * 117.51878 * 359.97438 * 20 18 8 36 36 H 1.08001 * 119.99421 * 179.72845 * 21 7 6 37 37 H 1.08002 * 120.00219 * 180.24504 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2020 1.1318 -1.1963 6 6 5.5800 1.0233 -1.1957 7 6 6.2687 0.9691 0.0017 8 6 7.7709 0.8502 0.0024 9 1 8.1336 0.8218 -1.0251 10 6 8.1744 -0.4158 0.7133 11 1 8.2692 -0.4244 1.7890 12 6 8.4225 -1.5633 -0.0098 13 7 8.4219 -1.5252 -1.3244 14 14 8.7592 -3.1721 0.8779 15 1 8.7026 -2.9491 2.3450 16 1 7.7350 -4.1751 0.4903 17 1 10.1070 -3.6710 0.5041 18 6 8.3776 2.0555 0.7235 19 6 9.9019 2.1875 0.7195 20 6 9.0503 3.1279 -0.1358 21 6 5.5786 1.0181 1.1986 22 6 4.2010 1.1319 1.1981 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.6641 1.1746 -2.1318 29 1 6.1187 0.9809 -2.1308 30 1 8.5968 -2.3325 -1.8330 31 1 7.8462 2.3860 1.6160 32 1 10.4724 1.4159 0.2027 33 1 10.3733 2.6048 1.6093 34 1 8.9615 4.1638 0.1913 35 1 9.0611 2.9749 -1.2149 36 1 6.1162 0.9713 2.1341 37 1 3.6623 1.1742 2.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260092864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:27 Heat of formation + Delta-G solvation = -23.427591 kcal Electronic energy + Delta-G solvation = -17415.767624 eV Core-core repulsion = 14736.779108 eV Total energy + Delta-G solvation = -2678.988516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41249 -38.78081 -37.82750 -34.92293 -33.19250 -31.64189 -29.98132 -27.63651 -26.26128 -24.74001 -23.51575 -22.99542 -21.93027 -20.65917 -18.40113 -17.49830 -17.21738 -16.77000 -16.60799 -16.44017 -15.53087 -15.41811 -14.95489 -14.81297 -14.17705 -13.97439 -13.47214 -13.24072 -13.11044 -12.99681 -12.82446 -12.42000 -12.27214 -12.23145 -11.87752 -11.75222 -11.70659 -11.09595 -10.97469 -10.58883 -10.52408 -10.37445 -9.61231 -9.20234 -8.12016 -6.18625 0.62883 0.71557 1.37426 1.40636 1.50426 2.41263 2.83737 3.17173 3.27380 3.41285 4.01326 4.04850 4.12273 4.29730 4.33124 4.39249 4.44367 4.47668 4.59217 4.60362 4.68384 4.85490 4.87467 4.91142 4.93495 4.95445 5.21135 5.25327 5.38854 5.45268 5.48329 5.68532 5.77187 5.79569 5.90490 6.12219 6.29250 6.35815 6.42550 6.94403 7.45653 8.95537 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.006975 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.025598 B = 4013.115097 C = 4951.194061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.419 6.419 3 C 0.114 3.886 4 C -0.131 4.131 5 C -0.104 4.104 6 C -0.147 4.147 7 C -0.034 4.034 8 C 0.090 3.910 9 H 0.032 0.968 10 C -0.499 4.499 11 H 0.054 0.946 12 C 0.015 3.985 13 N -0.922 5.922 14 Si 0.944 3.056 15 H -0.264 1.264 16 H -0.287 1.287 17 H -0.280 1.280 18 C -0.136 4.136 19 C -0.170 4.170 20 C -0.181 4.181 21 C -0.130 4.130 22 C -0.104 4.104 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.259 0.741 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.099 7.641 3.208 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.340 6.340 3 C 0.038 3.962 4 C -0.131 4.131 5 C -0.122 4.122 6 C -0.165 4.165 7 C -0.034 4.034 8 C 0.071 3.929 9 H 0.050 0.950 10 C -0.537 4.537 11 H 0.072 0.928 12 C -0.183 4.183 13 N -0.562 5.562 14 Si 0.770 3.230 15 H -0.188 1.188 16 H -0.213 1.213 17 H -0.206 1.206 18 C -0.155 4.155 19 C -0.207 4.207 20 C -0.217 4.217 21 C -0.149 4.149 22 C -0.122 4.122 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.960 7.365 3.058 13.554 hybrid contribution 0.359 -1.093 -0.032 1.151 sum -10.601 6.272 3.026 12.683 Atomic orbital electron populations 1.22939 0.79434 1.03625 1.01155 1.87982 1.21551 1.28812 1.95613 1.21310 0.88380 0.84540 1.01930 1.19674 0.95056 1.05165 0.93195 1.21098 0.93509 0.99448 0.98153 1.21089 0.94672 1.03076 0.97666 1.20672 0.98131 0.91785 0.92835 1.17558 0.87355 0.91575 0.96394 0.94987 1.21209 1.44554 0.94834 0.93150 0.92810 1.25670 0.95209 1.02008 0.95436 1.70039 1.50946 1.28886 1.06287 0.85713 0.77461 0.80356 0.79455 1.18760 1.21348 1.20553 1.22372 0.94924 0.97568 1.00606 1.22706 0.94044 1.01776 1.02128 1.23000 1.05511 0.95952 0.97283 1.20997 0.94200 1.01889 0.97768 1.21176 0.93748 0.99227 0.98026 0.92641 0.92853 0.89097 0.90838 0.91250 0.85249 0.88177 0.93156 0.88690 0.91303 0.87808 0.87336 0.90623 0.86523 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -12.25 10.69 -148.98 -1.59 -13.84 16 3 C 0.11 2.99 6.06 71.24 0.43 3.42 16 4 C -0.13 -4.48 5.51 -19.87 -0.11 -4.59 16 5 C -0.10 -3.89 9.70 22.27 0.22 -3.68 16 6 C -0.15 -6.50 9.67 22.27 0.22 -6.28 16 7 C -0.03 -1.55 4.77 -19.87 -0.09 -1.65 16 8 C 0.09 4.46 2.23 -12.29 -0.03 4.44 16 9 H 0.03 1.80 6.76 -2.39 -0.02 1.79 16 10 C -0.50 -27.13 7.71 25.60 0.20 -26.94 16 11 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 12 C 0.02 0.86 5.45 84.65 0.46 1.32 16 13 N -0.92 -54.57 12.76 21.45 0.27 -54.29 16 14 Si 0.94 44.68 29.54 68.60 2.03 46.71 16 15 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 C -0.14 -5.66 4.93 -10.79 -0.05 -5.72 16 19 C -0.17 -6.48 10.01 30.59 0.31 -6.18 16 20 C -0.18 -6.47 10.18 30.59 0.31 -6.16 16 21 C -0.13 -5.37 8.67 22.27 0.19 -5.18 16 22 C -0.10 -3.67 9.70 22.27 0.22 -3.46 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 27 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 28 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 29 H 0.10 4.60 7.95 -2.91 -0.02 4.58 16 30 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.10 3.69 7.44 -2.39 -0.02 3.67 16 32 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.10 3.34 8.14 -2.39 -0.02 3.33 16 34 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 36 H 0.12 4.66 7.81 -2.91 -0.02 4.63 16 37 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -64.02 315.23 5.25 -58.78 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 1.03 Total: 21.59 kcal Atomic # 6 Polarization: -62.45 SS G_CDS: 3.51 Total: -58.94 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.27 Total: -54.29 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.59 Total: -13.84 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.02 5.25 -58.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260092864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.349 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds