Wall clock time and date at job start Mon Mar 30 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.67120 * 2 1 4 4 C 1.53399 * 109.67745 * 120.51169 * 2 1 3 5 5 C 1.53070 * 108.29457 * 184.38304 * 4 2 1 6 6 C 1.50765 * 109.69794 * 311.80126 * 5 4 2 7 7 C 1.38501 * 118.75986 * 197.67330 * 6 5 4 8 8 C 1.50697 * 119.84242 * 0.40714 * 7 6 5 9 9 C 1.53006 * 109.47097 * 85.00004 * 8 7 6 10 10 C 1.50697 * 109.47097 * 179.97438 * 9 8 7 11 11 H 1.08013 * 120.00172 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00111 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99885 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99793 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47194 * 60.00770 * 14 12 10 16 16 H 1.48508 * 109.46649 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47541 * 300.00164 * 14 12 10 18 18 C 1.38101 * 120.31562 * 180.38456 * 7 6 5 19 19 C 1.38291 * 119.98165 * 0.02562 * 18 7 6 20 20 C 1.37965 * 119.95882 * 359.89729 * 19 18 7 21 21 C 1.38376 * 121.40342 * 17.88956 * 6 5 4 22 22 O 1.35845 * 121.80293 * 359.46623 * 21 6 5 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00260 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00089 * 1 2 3 26 26 H 1.09003 * 109.69716 * 304.11735 * 4 2 1 27 27 H 1.08991 * 109.70414 * 64.72044 * 4 2 1 28 28 H 1.08999 * 109.44349 * 191.71722 * 5 4 2 29 29 H 1.09003 * 109.36822 * 71.83986 * 5 4 2 30 30 H 1.09003 * 109.47201 * 204.99657 * 8 7 6 31 31 H 1.08996 * 109.47217 * 325.00198 * 8 7 6 32 32 H 1.08994 * 109.46938 * 299.99796 * 9 8 7 33 33 H 1.08996 * 109.46929 * 60.00018 * 9 8 7 34 34 H 0.96997 * 119.99999 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.01353 * 179.97438 * 18 7 6 36 36 H 1.08004 * 120.02193 * 179.97438 * 19 18 7 37 37 H 1.08006 * 119.89228 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0466 -0.7333 1.2444 5 6 3.5728 -0.6196 1.2702 6 6 4.1320 -0.9774 -0.0834 7 6 5.4753 -1.2989 -0.1858 8 6 6.3434 -1.2946 1.0461 9 6 6.2241 -2.6433 1.7587 10 6 7.0926 -2.6393 2.9902 11 1 7.6715 -1.7623 3.2400 12 6 7.1475 -3.7548 3.7988 13 7 6.4423 -4.8224 3.4950 14 14 8.2247 -3.7500 5.3249 15 1 7.7834 -2.6659 6.2389 16 1 8.1088 -5.0590 6.0167 17 1 9.6385 -3.5216 4.9323 18 6 6.0229 -1.6238 -1.4112 19 6 5.2290 -1.6285 -2.5435 20 6 3.8900 -1.3107 -2.4474 21 6 3.3342 -0.9852 -1.2140 22 8 2.0110 -0.6827 -1.1586 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6283 -0.2754 2.1408 27 1 1.7577 -1.7833 1.1985 28 1 3.9748 -1.3007 2.0203 29 1 3.8550 0.4031 1.5205 30 1 7.3812 -1.1262 0.7587 31 1 6.0184 -0.4993 1.7168 32 1 5.1863 -2.8118 2.0461 33 1 6.5491 -3.4386 1.0880 34 1 6.4806 -5.6070 4.0640 35 1 7.0711 -1.8733 -1.4855 36 1 5.6567 -1.8821 -3.5023 37 1 3.2708 -1.3151 -3.3324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260095774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:09 Heat of formation + Delta-G solvation = -44.689294 kcal Electronic energy + Delta-G solvation = -17702.054083 eV Core-core repulsion = 15022.143591 eV Total energy + Delta-G solvation = -2679.910493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47484 -37.64716 -34.76915 -33.38797 -31.98487 -31.48306 -28.67462 -27.95027 -25.01233 -23.91595 -22.74609 -21.85371 -20.04594 -19.57662 -17.31452 -16.43285 -16.07245 -15.49567 -14.78145 -14.50436 -14.12017 -13.86831 -13.56495 -13.01169 -12.95378 -12.71626 -12.35762 -12.31948 -12.02252 -11.87288 -11.39902 -11.23872 -10.95416 -10.91521 -10.65838 -10.56050 -10.42007 -10.06485 -9.79423 -9.53666 -9.07411 -8.35369 -8.05740 -7.72607 -6.00514 -4.03909 1.75143 1.86556 3.32292 3.37036 3.39181 3.42563 4.14637 4.45202 4.74077 4.85463 4.99913 5.18572 5.20076 5.34748 5.40045 5.42565 5.52527 5.57948 5.72411 5.77561 5.87113 5.91262 6.01874 6.13665 6.29713 6.30086 6.39228 6.53585 6.66356 6.69588 6.89119 6.98486 7.17451 7.24364 7.67817 7.78049 7.82309 7.99664 8.39332 9.02910 9.60110 11.10335 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.005924 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.073257 B = 4725.673203 C = 5470.285618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.153 4.153 5 C -0.084 4.084 6 C -0.156 4.156 7 C -0.024 4.024 8 C -0.082 4.082 9 C 0.031 3.969 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.154 4.154 19 C -0.090 4.090 20 C -0.169 4.169 21 C 0.129 3.871 22 O -0.319 6.319 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 9.445 -8.151 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.120 4.120 6 C -0.157 4.157 7 C -0.024 4.024 8 C -0.120 4.120 9 C -0.005 4.005 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.172 4.172 19 C -0.108 4.108 20 C -0.188 4.188 21 C 0.084 3.916 22 O -0.234 6.234 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.923 9.224 -8.219 15.240 hybrid contribution 0.701 -0.149 1.014 1.242 sum -8.223 9.075 -7.204 14.208 Atomic orbital electron populations 1.21790 0.92554 1.03243 1.02547 1.22433 0.94916 0.95021 0.84575 0.91468 1.22279 0.96740 1.02033 0.97958 1.20588 0.93922 1.02518 0.95019 1.19656 0.94338 1.07377 0.94323 1.20115 0.93037 0.93325 0.95962 1.20880 0.96863 1.01777 0.92440 1.19054 0.97311 0.89762 0.94420 1.21212 1.26823 0.99595 1.08498 0.92668 1.25015 0.95757 0.95582 0.97956 1.69961 1.40894 1.03894 1.38525 0.86668 0.81080 0.77147 0.83162 1.20246 1.21291 1.20222 1.20955 1.00240 1.03889 0.92163 1.20812 0.92845 0.98739 0.98394 1.20382 0.95336 1.07875 0.95171 1.18625 0.82439 0.97171 0.93356 1.85917 1.21534 1.73537 1.42428 0.91554 0.90567 0.91802 0.90110 0.90482 0.88122 0.91048 0.92155 0.92063 0.96260 0.96427 0.92914 0.86088 0.86053 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.59 37.16 0.36 -1.06 16 2 C 0.09 1.12 3.42 -26.52 -0.09 1.03 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.15 -2.10 5.49 -26.49 -0.15 -2.25 16 5 C -0.08 -1.38 4.68 -27.82 -0.13 -1.51 16 6 C -0.16 -2.84 5.75 -104.44 -0.60 -3.44 16 7 C -0.02 -0.47 5.14 -104.58 -0.54 -1.00 16 8 C -0.08 -1.72 4.61 -27.88 -0.13 -1.85 16 9 C 0.03 0.81 4.79 -27.88 -0.13 0.68 16 10 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 11 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 14 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.15 -2.69 9.67 -39.61 -0.38 -3.07 16 19 C -0.09 -1.38 10.04 -39.66 -0.40 -1.78 16 20 C -0.17 -2.69 9.94 -39.35 -0.39 -3.08 16 21 C 0.13 2.22 6.47 -39.19 -0.25 1.97 16 22 O -0.32 -5.07 9.92 -19.25 -0.19 -5.26 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.91 5.76 -51.93 -0.30 1.61 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.22 8.05 -51.93 -0.42 0.81 16 31 H 0.06 1.23 7.07 -51.93 -0.37 0.86 16 32 H 0.02 0.52 6.65 -51.93 -0.35 0.18 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 301.11 15.07 4.54 4.54 Total: -1.00 -30.71 301.11 -8.81 -39.52 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.62 Total: -0.38 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -3.25 Total: -28.77 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.13 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.19 Total: -5.26 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.71 -8.81 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.170 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds