Wall clock time and date at job start Mon Mar 30 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 113.99802 * 2 1 4 4 H 1.08992 * 109.47368 * 332.23128 * 3 2 1 5 5 C 1.53005 * 109.47307 * 92.23383 * 3 2 1 6 6 C 1.50700 * 109.46839 * 212.22821 * 3 2 1 7 7 C 1.38252 * 120.00248 * 326.70677 * 6 3 2 8 8 C 1.38217 * 119.99876 * 179.97438 * 7 6 3 9 9 C 1.38257 * 120.00007 * 0.09542 * 8 7 6 10 10 C 1.38208 * 120.00052 * 359.97438 * 9 8 7 11 11 C 1.38223 * 119.99819 * 146.79621 * 6 3 2 12 12 C 1.50701 * 119.99562 * 0.27607 * 11 6 3 13 13 C 1.50702 * 115.54934 * 280.43347 * 12 11 6 14 14 H 1.08004 * 119.99408 * 144.10589 * 13 12 11 15 15 C 1.37869 * 120.00548 * 324.10928 * 13 12 11 16 16 N 1.31520 * 119.99739 * 1.57353 * 15 13 12 17 17 Si 1.86796 * 120.00326 * 181.56970 * 15 13 12 18 18 H 1.48496 * 109.47221 * 5.00970 * 17 15 13 19 19 H 1.48507 * 109.47065 * 125.00772 * 17 15 13 20 20 H 1.48494 * 109.47268 * 245.00750 * 17 15 13 21 21 C 1.53000 * 117.49486 * 134.73141 * 12 11 6 22 22 C 1.52998 * 117.49864 * 66.11126 * 12 11 6 23 23 H 1.09005 * 109.47006 * 60.00455 * 1 2 3 24 24 H 1.09007 * 109.47209 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47702 * 300.00022 * 1 2 3 26 26 H 1.09001 * 109.46735 * 292.62283 * 5 3 2 27 27 H 1.08999 * 109.46905 * 52.61591 * 5 3 2 28 28 H 1.08995 * 109.47513 * 172.62095 * 5 3 2 29 29 H 1.07999 * 120.00482 * 0.03942 * 7 6 3 30 30 H 1.08000 * 119.99551 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.00019 * 179.97438 * 9 8 7 32 32 H 1.08002 * 120.00143 * 179.97438 * 10 9 8 33 33 H 0.97001 * 119.99877 * 185.00265 * 16 15 13 34 34 H 1.08997 * 117.49928 * 359.97438 * 21 12 11 35 35 H 1.08999 * 117.49975 * 145.01725 * 21 12 11 36 36 H 1.08998 * 117.49709 * 214.97471 * 22 12 11 37 37 H 1.08999 * 117.50209 * 359.97426 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3273 2.0071 -0.4788 5 6 2.2690 1.7485 1.4414 6 6 3.3125 1.2754 -0.7577 7 6 4.1041 0.1424 -0.7272 8 6 5.2982 0.1148 -1.4227 9 6 5.7020 1.2209 -2.1471 10 6 4.9114 2.3541 -2.1764 11 6 3.7164 2.3814 -1.4817 12 6 2.8574 3.6194 -1.5082 13 6 1.6802 3.5737 -2.4480 14 1 0.7510 4.0505 -2.1730 15 6 1.7894 2.9232 -3.6587 16 7 2.9109 2.3161 -3.9801 17 14 0.3445 2.9041 -4.8424 18 1 -0.7479 3.7536 -4.3038 19 1 0.7778 3.4321 -6.1610 20 1 -0.1450 1.5115 -5.0035 21 6 3.5547 4.9673 -1.3136 22 6 2.6848 4.3876 -0.1964 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.3176 1.8967 1.9523 27 1 2.8440 0.9812 1.9597 28 1 2.8296 2.6832 1.4392 29 1 3.7890 -0.7215 -0.1609 30 1 5.9164 -0.7705 -1.3991 31 1 6.6354 1.1995 -2.6902 32 1 5.2270 3.2184 -2.7420 33 1 3.0136 1.9210 -4.8601 34 1 4.6346 4.9586 -1.1660 35 1 3.1621 5.8213 -1.8654 36 1 1.7199 4.8604 -0.0132 37 1 3.1922 3.9975 0.6859 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260165854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:48 Heat of formation + Delta-G solvation = -8.771182 kcal Electronic energy + Delta-G solvation = -18758.131369 eV Core-core repulsion = 16079.778403 eV Total energy + Delta-G solvation = -2678.352967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72643 -38.51316 -37.43690 -34.15474 -33.31614 -31.00711 -29.91610 -27.63360 -27.48156 -24.33103 -23.79625 -22.96908 -21.54031 -20.62916 -18.60461 -17.48469 -17.05329 -16.61372 -16.08160 -15.92259 -15.49969 -15.13057 -14.92389 -14.63687 -13.94207 -13.61335 -13.50225 -13.44601 -13.06272 -12.87945 -12.71354 -12.61728 -12.39869 -12.20463 -11.91249 -11.59093 -11.54196 -11.23418 -10.93048 -10.55315 -10.47452 -10.10894 -9.32492 -9.08699 -7.86571 -6.15243 0.87621 1.02845 1.37016 1.41777 1.49540 2.41234 2.98356 3.05317 3.35310 3.66085 4.05979 4.24474 4.39192 4.42264 4.47080 4.52118 4.57268 4.61741 4.70895 4.74769 4.76093 4.83031 4.89516 5.03067 5.05069 5.15315 5.22854 5.34958 5.39927 5.56120 5.60255 5.63665 5.74232 5.92260 6.02117 6.27718 6.41199 6.51584 6.57098 6.85800 7.45263 8.95272 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.011856 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.006109 B = 2361.051837 C = 2729.846595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.404 6.404 3 C 0.131 3.869 4 H 0.067 0.933 5 C -0.163 4.163 6 C -0.106 4.106 7 C -0.121 4.121 8 C -0.151 4.151 9 C -0.139 4.139 10 C -0.074 4.074 11 C 0.028 3.972 12 C 0.051 3.949 13 C -0.504 4.504 14 H 0.054 0.946 15 C 0.034 3.966 16 N -0.878 5.878 17 Si 0.938 3.062 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.287 1.287 21 C -0.204 4.204 22 C -0.187 4.187 23 H 0.025 0.975 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.256 0.744 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 -2.447 7.321 7.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.323 6.323 3 C 0.074 3.926 4 H 0.085 0.915 5 C -0.219 4.219 6 C -0.106 4.106 7 C -0.139 4.139 8 C -0.169 4.169 9 C -0.158 4.158 10 C -0.093 4.093 11 C 0.028 3.972 12 C 0.051 3.949 13 C -0.541 4.541 14 H 0.072 0.928 15 C -0.169 4.169 16 N -0.514 5.514 17 Si 0.765 3.235 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.213 1.213 21 C -0.242 4.242 22 C -0.223 4.223 23 H 0.044 0.956 24 H 0.119 0.881 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.383 -2.771 7.189 7.714 hybrid contribution -0.925 0.356 -1.254 1.599 sum -0.542 -2.416 5.934 6.430 Atomic orbital electron populations 1.22868 0.80518 1.03308 1.00004 1.87788 1.20584 1.28691 1.95259 1.20843 0.92411 0.84090 0.95268 0.91460 1.22351 1.02479 1.02123 0.94994 1.19582 0.96161 0.94544 1.00311 1.20858 0.94875 0.97333 1.00798 1.21075 0.97345 0.98681 0.99750 1.21131 1.00278 0.93810 1.00531 1.20553 0.94332 0.97816 0.96557 1.18873 0.92376 0.94136 0.91834 1.17851 0.95334 0.87196 0.94549 1.20669 0.96931 1.34640 1.01878 0.92790 1.25566 0.97756 0.94037 0.99494 1.70188 1.25822 1.35348 1.20030 0.85808 0.80729 0.77527 0.79425 1.19181 1.20811 1.21308 1.23036 0.96817 1.00244 1.04104 1.23147 1.00572 1.05957 0.92658 0.95578 0.88127 0.92702 0.91424 0.91986 0.90733 0.86371 0.84918 0.85696 0.88935 0.93419 0.90610 0.90810 0.89934 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.82 113.37 1.23 2.14 16 2 O -0.40 -15.59 9.43 -148.98 -1.41 -16.99 16 3 C 0.13 5.25 2.23 29.85 0.07 5.31 16 4 H 0.07 3.02 5.55 -2.39 -0.01 3.01 16 5 C -0.16 -5.27 9.23 71.98 0.66 -4.61 16 6 C -0.11 -4.66 5.00 -19.86 -0.10 -4.76 16 7 C -0.12 -4.93 9.35 22.27 0.21 -4.72 16 8 C -0.15 -5.72 10.05 22.27 0.22 -5.50 16 9 C -0.14 -5.58 10.05 22.27 0.22 -5.36 16 10 C -0.07 -3.39 7.49 22.27 0.17 -3.23 16 11 C 0.03 1.33 3.51 -19.86 -0.07 1.26 16 12 C 0.05 2.41 0.99 -53.67 -0.05 2.35 16 13 C -0.50 -26.37 8.03 25.60 0.21 -26.17 16 14 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 15 C 0.03 1.81 5.38 84.65 0.46 2.27 16 16 N -0.88 -48.17 10.09 21.45 0.22 -47.96 16 17 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 21 C -0.20 -8.76 9.53 30.59 0.29 -8.47 16 22 C -0.19 -7.45 8.40 30.59 0.26 -7.19 16 23 H 0.03 0.88 8.09 -2.38 -0.02 0.86 16 24 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 2.41 4.75 -2.39 -0.01 2.40 16 29 H 0.12 4.48 7.58 -2.91 -0.02 4.46 16 30 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 32 H 0.09 4.38 7.90 -2.91 -0.02 4.36 16 33 H 0.26 13.75 8.32 -92.71 -0.77 12.98 16 34 H 0.08 3.07 7.97 -2.39 -0.02 3.06 16 35 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.09 3.41 5.47 -2.39 -0.01 3.40 16 Total: -1.00 -58.37 298.85 5.65 -52.73 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 1.04 Total: 24.12 kcal Atomic # 6 Polarization: -60.45 SS G_CDS: 3.77 Total: -56.68 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.22 Total: -47.96 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.41 Total: -16.99 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -58.37 5.65 -52.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.955 kcal (2) G-P(sol) polarization free energy of solvation -58.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds