Wall clock time and date at job start Mon Mar 30 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00114 * 2 1 4 4 C 1.52998 * 115.56294 * 40.00038 * 3 2 1 5 5 C 1.50707 * 109.46910 * 85.40811 * 4 3 2 6 6 C 1.38256 * 119.99711 * 95.43186 * 5 4 3 7 7 C 1.38214 * 119.99670 * 180.02562 * 6 5 4 8 8 C 1.38261 * 119.99926 * 359.95026 * 7 6 5 9 9 C 1.38206 * 120.00484 * 0.02562 * 8 7 6 10 10 C 1.50692 * 120.00472 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47226 * 89.99517 * 10 9 8 12 12 H 1.07998 * 120.00200 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99946 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99711 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00380 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46931 * 89.99667 * 15 13 11 17 17 H 1.48500 * 109.47416 * 209.99795 * 15 13 11 18 18 H 1.48501 * 109.46715 * 330.00288 * 15 13 11 19 19 C 1.38214 * 119.99899 * 275.15423 * 5 4 3 20 20 C 1.53005 * 117.49849 * 185.68949 * 3 2 1 21 21 C 1.52996 * 117.49955 * 254.31100 * 3 2 1 22 22 H 1.08994 * 109.46838 * 173.34328 * 1 2 3 23 23 H 1.08994 * 109.47383 * 293.35172 * 1 2 3 24 24 H 1.09005 * 109.46748 * 53.34943 * 1 2 3 25 25 H 1.08994 * 109.47432 * 205.40956 * 4 3 2 26 26 H 1.09001 * 109.47147 * 325.41668 * 4 3 2 27 27 H 1.07996 * 119.99967 * 359.97317 * 6 5 4 28 28 H 1.07997 * 120.00021 * 179.97438 * 7 6 5 29 29 H 1.08006 * 119.99492 * 180.02562 * 8 7 6 30 30 H 1.09005 * 109.47473 * 210.00346 * 10 9 8 31 31 H 1.09003 * 109.46891 * 329.99924 * 10 9 8 32 32 H 0.97006 * 119.99557 * 179.97438 * 14 13 11 33 33 H 1.07996 * 120.00108 * 359.97438 * 19 5 4 34 34 H 1.08998 * 117.49847 * 359.97438 * 20 3 2 35 35 H 1.08995 * 117.49765 * 214.98249 * 20 3 2 36 36 H 1.09006 * 117.50045 * 145.01906 * 21 3 2 37 37 H 1.09002 * 117.51834 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3129 2.3386 0.8872 5 6 1.8396 2.2290 2.2950 6 6 2.8631 3.0574 2.7165 7 6 3.3465 2.9565 4.0074 8 6 2.8057 2.0280 4.8775 9 6 1.7822 1.2003 4.4563 10 6 1.1924 0.1887 5.4048 11 6 0.0417 0.8120 6.1522 12 1 -0.2351 1.8379 5.9593 13 6 -0.6576 0.0725 7.0822 14 7 -1.6621 0.6163 7.7341 15 14 -0.1785 -1.7018 7.4164 16 1 0.8292 -1.7455 8.5064 17 1 -1.3816 -2.4712 7.8236 18 1 0.3979 -2.2992 6.1851 19 6 1.2954 1.3044 3.1664 20 6 3.5314 1.4015 -0.1345 21 6 2.6329 1.8015 -1.3065 22 1 -0.3633 -1.0207 -0.1191 23 1 -0.3634 0.4073 0.9434 24 1 -0.3633 0.6135 -0.8245 25 1 1.5092 3.3394 0.5027 26 1 0.2388 2.1530 0.8857 27 1 3.2855 3.7826 2.0368 28 1 4.1463 3.6032 4.3366 29 1 3.1832 1.9495 5.8864 30 1 0.8353 -0.6731 4.8409 31 1 1.9552 -0.1321 6.1142 32 1 -2.1544 0.0959 8.3881 33 1 0.4926 0.6608 2.8386 34 1 4.0887 0.4689 -0.2226 35 1 4.0352 2.2007 0.4090 36 1 2.5456 2.8640 -1.5341 37 1 2.5997 1.1322 -2.1662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:28 Heat of formation + Delta-G solvation = -2.284998 kcal Electronic energy + Delta-G solvation = -17533.150891 eV Core-core repulsion = 14855.079186 eV Total energy + Delta-G solvation = -2678.071705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.63523 -38.17092 -35.08168 -33.52092 -31.97805 -31.16436 -27.73047 -26.96936 -26.50543 -22.98782 -22.51668 -21.69804 -20.32206 -19.38532 -16.78931 -16.72723 -15.88098 -15.62300 -14.92254 -14.66373 -14.49674 -14.05423 -14.00345 -13.31292 -12.82512 -12.70189 -12.23288 -12.03865 -11.92681 -11.62624 -11.45323 -11.44087 -11.13189 -10.96836 -10.61904 -10.35626 -10.17967 -10.02439 -9.88735 -9.37201 -9.15913 -8.58283 -8.13510 -7.80564 -6.07636 -4.06559 1.96433 2.08986 3.28770 3.36527 3.40372 3.51342 3.81387 4.37070 4.41741 4.66880 4.81669 4.96867 5.23152 5.27441 5.32306 5.41038 5.47406 5.52328 5.56476 5.60200 5.65864 5.73388 5.86162 5.90489 5.95448 6.07815 6.13476 6.29832 6.55355 6.69115 6.97580 7.04618 7.06485 7.14279 7.25590 7.61990 7.63222 7.73812 8.49744 8.97592 9.52936 11.05307 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.006062 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.718135 B = 4617.898282 C = 5199.771212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.051 3.949 4 C -0.067 4.067 5 C -0.084 4.084 6 C -0.142 4.142 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.027 4.027 10 C 0.013 3.987 11 C -0.512 4.512 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.264 1.264 19 C -0.109 4.109 20 C -0.152 4.152 21 C -0.201 4.201 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 2.463 -15.797 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.267 6.267 3 C 0.011 3.989 4 C -0.104 4.104 5 C -0.084 4.084 6 C -0.160 4.160 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.027 4.027 10 C -0.024 4.024 11 C -0.550 4.550 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.127 4.127 20 C -0.189 4.189 21 C -0.238 4.238 22 H 0.104 0.896 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.014 2.252 -15.660 17.735 hybrid contribution -0.097 -0.709 0.354 0.798 sum 7.917 1.543 -15.305 17.300 Atomic orbital electron populations 1.22842 0.80929 1.02648 1.00668 1.87887 1.19946 1.24503 1.94347 1.21773 0.94536 0.85354 0.97266 1.20531 1.00316 0.97682 0.91884 1.19490 0.97320 0.97284 0.94275 1.20699 0.98487 1.00526 0.96271 1.20973 1.00139 0.98872 0.93970 1.21056 0.97470 0.96367 0.99304 1.20246 0.92643 0.95961 0.93825 1.18814 0.96376 0.93540 0.93632 1.20932 1.12823 1.00393 1.20831 0.90860 1.24993 0.94649 0.98159 0.95414 1.69907 1.20772 1.37086 1.26140 0.86818 0.78202 0.85412 0.79192 1.20141 1.21235 1.18884 1.20858 0.99913 0.98559 0.93354 1.23141 0.91607 1.03428 1.00685 1.23635 1.05247 1.01716 0.93189 0.89550 0.92894 0.93983 0.90109 0.89940 0.87361 0.87021 0.86507 0.95452 0.95873 0.92623 0.86759 0.88332 0.87702 0.88524 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.00 101.05 1.01 1.32 16 2 O -0.35 -5.15 10.95 -35.23 -0.39 -5.53 16 3 C 0.05 0.66 2.35 -90.62 -0.21 0.45 16 4 C -0.07 -0.89 5.15 -27.88 -0.14 -1.03 16 5 C -0.08 -1.37 4.81 -104.62 -0.50 -1.88 16 6 C -0.14 -2.18 8.91 -39.58 -0.35 -2.53 16 7 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 8 C -0.12 -2.40 9.70 -39.58 -0.38 -2.79 16 9 C -0.03 -0.58 5.07 -104.63 -0.53 -1.11 16 10 C 0.01 0.33 4.17 -29.04 -0.12 0.21 16 11 C -0.51 -14.66 9.65 -34.44 -0.33 -14.99 16 12 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 15 Si 0.88 21.56 27.47 -169.99 -4.67 16.90 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 19 C -0.11 -2.13 9.38 -39.58 -0.37 -2.50 16 20 C -0.15 -1.80 9.81 -26.73 -0.26 -2.06 16 21 C -0.20 -2.10 10.12 -26.73 -0.27 -2.37 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.05 0.68 5.65 -51.93 -0.29 0.39 16 24 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 25 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 26 H 0.08 1.07 5.93 -51.93 -0.31 0.77 16 27 H 0.11 1.35 8.04 -52.49 -0.42 0.93 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 30 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 31 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 33 H 0.11 2.23 6.91 -52.49 -0.36 1.87 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.17 7.37 -51.93 -0.38 0.78 16 36 H 0.10 0.85 8.05 -51.93 -0.42 0.44 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -31.38 307.14 -8.10 -39.47 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.47 Total: 1.19 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -2.97 Total: -29.75 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.77 Total: -26.90 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.39 Total: -5.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.38 -8.10 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.187 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds