Wall clock time and date at job start Mon Mar 30 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 116.99986 * 2 1 4 4 C 1.38750 * 120.05555 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94412 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.97557 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.46649 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47019 * 120.00154 * 6 5 4 9 9 C 1.50695 * 109.47014 * 240.00423 * 6 5 4 10 10 H 1.08004 * 120.00546 * 0.27454 * 9 6 5 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 6 14 14 H 1.48494 * 109.47228 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46793 * 120.00131 * 13 11 9 16 16 H 1.48500 * 109.47000 * 240.00224 * 13 11 9 17 17 C 1.38292 * 120.05723 * 0.25852 * 5 4 3 18 18 C 1.38241 * 120.10852 * 359.48853 * 17 5 4 19 19 C 1.38175 * 120.05514 * 0.50913 * 18 17 5 20 20 C 1.50705 * 120.02714 * 179.76683 * 19 18 17 21 21 C 1.52995 * 117.49759 * 8.60060 * 20 19 18 22 22 C 1.52994 * 59.99997 * 252.50914 * 21 20 19 23 23 H 1.09002 * 109.47203 * 300.00216 * 1 2 3 24 24 H 1.08994 * 109.46916 * 60.00363 * 1 2 3 25 25 H 1.09002 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.03273 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47168 * 60.00598 * 8 6 5 28 28 H 1.08998 * 109.46887 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47504 * 300.00247 * 8 6 5 30 30 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 31 31 H 1.07998 * 119.94772 * 179.73967 * 17 5 4 32 32 H 1.07996 * 119.97655 * 180.25436 * 18 17 5 33 33 H 1.08996 * 115.54681 * 154.30660 * 20 19 18 34 34 H 1.08996 * 117.50367 * 0.02562 * 21 20 19 35 35 H 1.09005 * 117.49992 * 145.01755 * 21 20 19 36 36 H 1.09000 * 117.49966 * 252.50755 * 22 21 20 37 37 H 1.09004 * 117.49811 * 107.49024 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 0.0000 6 6 1.1020 4.8698 -0.0012 7 1 0.0419 4.6164 -0.0028 8 6 1.4289 5.6901 1.2483 9 6 1.4268 5.6773 -1.2314 10 1 2.1502 5.3089 -1.9437 11 6 0.7958 6.8835 -1.4508 12 7 -0.0891 7.3295 -0.5861 13 14 1.1989 7.8847 -2.9754 14 1 2.2195 7.1688 -3.7822 15 1 -0.0317 8.0695 -3.7858 16 1 1.7288 9.2115 -2.5704 17 6 3.3020 3.6757 -0.0043 18 6 4.0560 2.5171 0.0015 19 6 3.4311 1.2847 0.0010 20 6 4.2538 0.0220 0.0020 21 6 5.7634 0.1627 0.2065 22 6 5.2088 -0.1998 -1.1725 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2128 2.3204 -0.0005 27 1 2.4891 5.9435 1.2494 28 1 0.8363 6.6049 1.2476 29 1 1.1940 5.1060 2.1382 30 1 -0.5327 8.1782 -0.7403 31 1 3.7923 4.6380 -0.0082 32 1 5.1344 2.5751 0.0022 33 1 3.7674 -0.8555 0.4280 34 1 6.1617 1.1684 0.3407 35 1 6.2707 -0.6224 0.7673 36 1 5.3511 -1.2234 -1.5190 37 1 5.2421 0.5675 -1.9460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:46 Heat of formation + Delta-G solvation = -1.177310 kcal Electronic energy + Delta-G solvation = -17615.042104 eV Core-core repulsion = 14937.018432 eV Total energy + Delta-G solvation = -2678.023672 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90126 -37.56690 -36.65118 -33.88445 -31.27847 -29.57372 -28.64444 -26.69007 -25.14804 -23.47721 -22.42461 -21.67196 -20.45181 -19.55014 -17.13293 -16.46701 -15.73512 -15.37446 -15.26445 -14.78579 -14.42458 -13.90213 -13.52372 -13.12220 -12.66286 -12.24625 -12.09103 -11.67074 -11.51011 -11.33644 -11.06468 -10.98319 -10.87535 -10.78761 -10.63294 -10.35907 -10.19001 -10.08191 -9.95885 -9.38567 -8.97735 -8.39974 -7.99159 -7.35001 -6.03340 -4.09934 1.98394 2.11172 3.27473 3.35730 3.40556 3.66108 4.00919 4.39180 4.55386 4.83401 5.07967 5.23881 5.26577 5.28270 5.41222 5.43365 5.57187 5.66685 5.74695 5.80270 5.95261 5.99776 6.09029 6.24217 6.29062 6.42020 6.68847 6.79926 6.87687 7.08571 7.17351 7.19242 7.35064 7.42860 7.70531 7.91119 7.95340 8.07786 8.37359 8.93029 9.54756 11.02377 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.006142 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.826782 B = 4558.016541 C = 5026.215399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.125 3.875 4 C -0.213 4.213 5 C 0.005 3.995 6 C 0.069 3.931 7 H 0.033 0.967 8 C -0.131 4.131 9 C -0.505 4.505 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.142 4.142 18 C -0.090 4.090 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.184 4.184 22 C -0.176 4.176 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.008 0.992 30 H 0.260 0.740 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 -12.491 1.884 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.081 3.919 4 C -0.232 4.232 5 C 0.005 3.995 6 C 0.051 3.949 7 H 0.051 0.949 8 C -0.189 4.189 9 C -0.544 4.544 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.160 4.160 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.220 4.220 22 C -0.213 4.213 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.140 0.860 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.285 -12.532 1.909 13.734 hybrid contribution -0.172 0.775 -0.862 1.172 sum 5.113 -11.757 1.047 12.864 Atomic orbital electron populations 1.22965 0.79132 1.02949 1.01599 1.85971 1.20744 1.27543 1.89306 1.18691 0.91350 0.83822 0.98053 1.21188 0.99640 0.91868 1.10479 1.20489 0.94228 0.95500 0.89315 1.17927 0.94090 0.87803 0.95102 0.94898 1.21774 1.00115 1.01981 0.95011 1.21146 1.23752 1.03854 1.05612 0.92320 1.24964 0.94930 0.97532 0.96553 1.69897 1.26932 1.20755 1.35321 0.86523 0.78270 0.80062 0.83133 1.19718 1.21026 1.20957 1.20967 0.93880 0.97769 1.03412 1.20784 0.99132 0.91310 0.99592 1.18180 0.89697 0.93584 1.10133 1.20692 0.90186 0.97251 1.02721 1.23038 0.96294 1.02784 0.99934 1.22990 1.04265 1.02183 0.91852 0.92859 0.92699 0.88981 0.86045 0.95126 0.89598 0.97274 0.92997 0.85852 0.86366 0.87371 0.88505 0.89030 0.89103 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.25 9.68 -19.41 -0.19 -5.44 16 3 C 0.13 2.30 6.66 -39.22 -0.26 2.04 16 4 C -0.21 -4.25 8.66 -39.44 -0.34 -4.60 16 5 C 0.00 0.11 4.73 -104.64 -0.50 -0.39 16 6 C 0.07 1.73 2.48 -92.93 -0.23 1.50 16 7 H 0.03 0.88 7.87 -51.93 -0.41 0.47 16 8 C -0.13 -3.16 8.78 37.15 0.33 -2.83 16 9 C -0.51 -13.72 8.23 -34.44 -0.28 -14.00 16 10 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 11 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 12 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 13 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C -0.14 -2.88 8.70 -39.56 -0.34 -3.22 16 18 C -0.09 -1.59 9.30 -39.60 -0.37 -1.96 16 19 C -0.12 -2.01 5.62 -104.47 -0.59 -2.60 16 20 C -0.09 -1.31 5.74 -91.77 -0.53 -1.83 16 21 C -0.18 -2.20 9.86 -26.74 -0.26 -2.46 16 22 C -0.18 -2.21 10.16 -26.74 -0.27 -2.48 16 23 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 24 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.12 2.28 6.19 -52.49 -0.32 1.96 16 27 H 0.03 0.70 7.40 -51.93 -0.38 0.31 16 28 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.12 2.51 7.58 -52.49 -0.40 2.11 16 32 H 0.12 1.77 6.02 -52.49 -0.32 1.45 16 33 H 0.11 1.54 7.77 -51.93 -0.40 1.13 16 34 H 0.10 1.14 6.18 -51.93 -0.32 0.82 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -28.87 302.93 -8.08 -36.95 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.31 Total: 2.13 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.75 Total: -29.89 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.63 Total: -24.44 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.19 Total: -5.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.87 -8.08 -36.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.774 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds