Wall clock time and date at job start Mon Mar 30 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.97595 * 180.29595 * 5 4 3 7 7 H 1.08997 * 109.47013 * 359.72286 * 6 5 4 8 8 C 1.53000 * 109.46995 * 239.72397 * 6 5 4 9 9 C 1.50699 * 109.47302 * 119.72793 * 6 5 4 10 10 H 1.08001 * 120.00029 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00078 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00389 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 120.00020 * 179.97438 * 11 9 6 14 14 H 1.48495 * 109.47162 * 59.99900 * 13 11 9 15 15 H 1.48496 * 109.47370 * 180.02562 * 13 11 9 16 16 H 1.48511 * 109.47109 * 299.99947 * 13 11 9 17 17 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 18 18 C 1.38242 * 120.11401 * 0.02562 * 17 5 4 19 19 C 1.38169 * 120.05494 * 359.94904 * 18 17 5 20 20 C 1.50694 * 120.02852 * 180.02562 * 19 18 17 21 21 C 1.53009 * 117.49934 * 8.63098 * 20 19 18 22 22 C 1.53001 * 117.50129 * 300.00847 * 20 19 18 23 23 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 27 27 H 1.09003 * 109.47311 * 60.00032 * 8 6 5 28 28 H 1.09009 * 109.47049 * 179.97438 * 8 6 5 29 29 H 1.08997 * 109.47606 * 300.00081 * 8 6 5 30 30 H 0.96993 * 120.00573 * 180.02562 * 12 11 9 31 31 H 1.07997 * 119.93892 * 179.97438 * 17 5 4 32 32 H 1.07998 * 119.97158 * 179.97438 * 18 17 5 33 33 H 1.09006 * 115.54979 * 154.33157 * 20 19 18 34 34 H 1.09005 * 117.49484 * 359.97438 * 21 20 19 35 35 H 1.08998 * 117.50078 * 145.01650 * 21 20 19 36 36 H 1.09004 * 117.49640 * 214.97438 * 22 20 19 37 37 H 1.08999 * 117.49897 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 1.1018 4.8698 0.0043 7 1 0.0417 4.6163 0.0034 8 6 1.4298 5.6953 -1.2415 9 6 1.4255 5.6722 1.2381 10 1 2.1513 5.3029 1.9474 11 6 0.7943 6.8774 1.4619 12 7 -0.0900 7.3270 0.5985 13 14 1.1950 7.8717 2.9917 14 1 2.6391 8.2174 2.9931 15 1 0.3872 9.1177 2.9979 16 1 0.8767 7.0700 4.2006 17 6 3.3018 3.6758 -0.0016 18 6 4.0559 2.5172 -0.0017 19 6 3.4311 1.2849 -0.0007 20 6 4.2537 0.0223 -0.0002 21 6 5.7637 0.1629 0.2027 22 6 5.2075 -0.1999 -1.1757 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2128 2.3203 -0.0010 27 1 1.1957 5.1150 -2.1340 28 1 0.8371 6.6102 -1.2376 29 1 2.4899 5.9488 -1.2407 30 1 -0.5338 8.1750 0.7557 31 1 3.7920 4.6381 -0.0024 32 1 5.1344 2.5754 -0.0023 33 1 3.7678 -0.8552 0.4265 34 1 6.1621 1.1688 0.3354 35 1 6.2715 -0.6220 0.7631 36 1 5.3495 -1.2237 -1.5221 37 1 5.2397 0.5670 -1.9496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:47 Heat of formation + Delta-G solvation = -1.065895 kcal Electronic energy + Delta-G solvation = -17609.669318 eV Core-core repulsion = 14931.650477 eV Total energy + Delta-G solvation = -2678.018840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.90135 -37.56786 -36.65233 -33.88279 -31.27785 -29.57370 -28.64346 -26.68914 -25.14387 -23.47732 -22.42985 -21.67473 -20.44950 -19.54996 -17.13796 -16.45220 -15.75156 -15.36180 -15.26583 -14.78844 -14.42788 -13.90057 -13.52780 -13.13761 -12.57602 -12.32895 -12.09778 -11.70149 -11.44876 -11.33871 -11.06290 -10.94243 -10.87563 -10.77354 -10.64411 -10.46197 -10.16322 -10.09613 -9.92955 -9.38072 -8.99603 -8.38973 -7.99169 -7.35025 -6.02675 -4.09518 1.98398 2.11102 3.30682 3.35051 3.38375 3.66150 4.00486 4.39508 4.55692 4.82516 5.07500 5.23218 5.26227 5.29023 5.40801 5.43897 5.57471 5.66682 5.74194 5.80268 5.94647 5.99669 6.08979 6.23111 6.28957 6.41908 6.68875 6.79983 6.87632 7.08584 7.17328 7.19215 7.35074 7.42876 7.70425 7.91129 7.95584 8.07799 8.37611 8.92901 9.55053 11.02972 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.006046 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.424390 B = 4630.088250 C = 5083.087217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.125 3.875 4 C -0.213 4.213 5 C 0.005 3.995 6 C 0.070 3.930 7 H 0.033 0.967 8 C -0.131 4.131 9 C -0.507 4.507 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.142 4.142 18 C -0.090 4.090 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.184 4.184 22 C -0.176 4.176 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.122 0.878 27 H 0.008 0.992 28 H 0.085 0.915 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -12.454 -2.458 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.081 3.919 4 C -0.232 4.232 5 C 0.005 3.995 6 C 0.052 3.948 7 H 0.051 0.949 8 C -0.189 4.189 9 C -0.545 4.545 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.161 4.161 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.220 4.220 22 C -0.213 4.213 23 H 0.072 0.928 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.027 0.973 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.256 -12.488 -2.489 13.776 hybrid contribution -0.149 0.757 0.883 1.173 sum 5.107 -11.731 -1.605 12.895 Atomic orbital electron populations 1.22965 0.79131 1.02949 1.01602 1.85972 1.20746 1.27539 1.89304 1.18693 0.91352 0.83822 0.98043 1.21189 0.99642 0.91867 1.10473 1.20489 0.94226 0.95507 0.89299 1.17914 0.94082 0.87774 0.95076 0.94900 1.21779 1.00106 1.02001 0.95010 1.21065 1.23772 1.04087 1.05586 0.92424 1.24954 0.94932 0.97471 0.96557 1.69871 1.26865 1.20808 1.35380 0.86632 0.78434 0.79360 0.83457 1.20195 1.21271 1.20274 1.20968 0.93881 0.97765 1.03440 1.20782 0.99129 0.91308 0.99586 1.18175 0.89696 0.93579 1.10144 1.20697 0.90226 0.97274 1.02638 1.23046 0.96308 1.02813 0.99871 1.22986 1.04361 1.02128 0.91828 0.92847 0.88980 0.92708 0.86045 0.97291 0.89596 0.95138 0.92879 0.85863 0.86367 0.87359 0.88488 0.89009 0.89121 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.25 9.68 -19.42 -0.19 -5.44 16 3 C 0.13 2.30 6.66 -39.22 -0.26 2.04 16 4 C -0.21 -4.26 8.66 -39.43 -0.34 -4.60 16 5 C 0.00 0.11 4.73 -104.65 -0.50 -0.39 16 6 C 0.07 1.75 2.48 -92.93 -0.23 1.52 16 7 H 0.03 0.88 7.87 -51.93 -0.41 0.47 16 8 C -0.13 -3.16 8.78 37.16 0.33 -2.83 16 9 C -0.51 -13.77 8.24 -34.44 -0.28 -14.05 16 10 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 11 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 12 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 13 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.14 -2.89 8.71 -39.56 -0.34 -3.23 16 18 C -0.09 -1.59 9.30 -39.61 -0.37 -1.95 16 19 C -0.12 -2.01 5.62 -104.48 -0.59 -2.60 16 20 C -0.09 -1.30 5.74 -91.77 -0.53 -1.83 16 21 C -0.18 -2.21 9.86 -26.72 -0.26 -2.47 16 22 C -0.18 -2.16 10.16 -26.73 -0.27 -2.43 16 23 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 26 H 0.12 2.28 6.19 -52.49 -0.32 1.96 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 2.26 6.07 -51.92 -0.32 1.94 16 29 H 0.03 0.69 7.38 -51.93 -0.38 0.31 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.12 2.51 7.56 -52.49 -0.40 2.11 16 32 H 0.12 1.77 6.02 -52.49 -0.32 1.45 16 33 H 0.11 1.55 7.77 -51.93 -0.40 1.15 16 34 H 0.10 1.16 6.18 -51.93 -0.32 0.83 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -28.81 302.91 -8.08 -36.89 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.31 Total: 2.15 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -2.75 Total: -29.86 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.63 Total: -24.44 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.19 Total: -5.44 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.81 -8.08 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.825 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds