Wall clock time and date at job start Mon Mar 30 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35894 * 116.99439 * 2 1 4 4 C 1.38754 * 120.09747 * 0.02562 * 3 2 1 5 5 C 1.37997 * 119.88077 * 180.02562 * 4 3 2 6 6 C 1.38547 * 120.28942 * 359.97438 * 5 4 3 7 7 C 1.38260 * 119.94140 * 0.02562 * 6 5 4 8 8 C 1.38413 * 119.90234 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.91760 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47295 * 89.99501 * 9 8 7 11 11 C 1.50706 * 109.47185 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99572 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99754 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00533 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99412 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47646 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47112 * 120.00549 * 15 13 11 18 18 H 1.48504 * 109.46816 * 240.00025 * 15 13 11 19 19 C 1.51382 * 109.75640 * 179.97438 * 7 6 5 20 20 C 1.54337 * 105.17094 * 342.80286 * 19 7 6 21 21 C 1.51395 * 130.31774 * 180.02562 * 6 5 4 22 22 H 1.08998 * 109.46730 * 299.99367 * 1 2 3 23 23 H 1.08995 * 109.47502 * 59.99867 * 1 2 3 24 24 H 1.09003 * 109.46538 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.05744 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.85657 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47540 * 209.99988 * 9 8 7 28 28 H 1.09006 * 109.46574 * 329.99712 * 9 8 7 29 29 H 1.09000 * 109.47224 * 300.00681 * 10 9 8 30 30 H 1.09004 * 109.46634 * 60.00605 * 10 9 8 31 31 H 0.96992 * 120.00220 * 180.02562 * 14 13 11 32 32 H 1.09002 * 110.30038 * 223.87780 * 19 7 6 33 33 H 1.09003 * 110.38414 * 101.76896 * 19 7 6 34 34 H 1.08999 * 110.82421 * 268.14206 * 20 19 7 35 35 H 1.09004 * 110.99380 * 144.67307 * 20 19 7 36 36 H 1.08993 * 110.30143 * 78.28889 * 21 6 5 37 37 H 1.08999 * 110.30180 * 316.13360 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2921 2.3758 0.0005 5 6 1.9231 3.6030 0.0000 6 6 3.3066 3.6774 -0.0005 7 6 4.0600 2.5182 -0.0011 8 6 3.4299 1.2857 -0.0005 9 6 4.2508 0.0219 -0.0005 10 6 4.5293 -0.4054 1.4419 11 6 5.3507 -1.6689 1.4419 12 1 5.6450 -2.1215 0.5065 13 6 5.7264 -2.2469 2.6360 14 7 5.3675 -1.6960 3.7749 15 14 6.7452 -3.8126 2.6358 16 1 7.0160 -4.2270 1.2358 17 1 8.0313 -3.5664 3.3363 18 1 5.9986 -4.8889 3.3355 19 6 5.5334 2.8655 -0.0022 20 6 5.5997 4.3431 -0.4428 21 6 4.2227 4.8827 -0.0007 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 0.2134 2.3221 0.0005 26 1 1.3359 4.5095 0.0000 27 1 3.7022 -0.7677 -0.5139 28 1 5.1949 0.2020 -0.5149 29 1 5.0778 0.3843 1.9553 30 1 3.5852 -0.5854 1.9561 31 1 5.6322 -2.1024 4.6148 32 1 6.0700 2.2350 -0.7112 33 1 5.9516 2.7498 0.9977 34 1 5.7176 4.4203 -1.5236 35 1 6.4047 4.8682 0.0716 36 1 4.2868 5.3091 1.0003 37 1 3.8646 5.6299 -0.7088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260250860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:37 Heat of formation + Delta-G solvation = -54.790615 kcal Electronic energy + Delta-G solvation = -17703.544079 eV Core-core repulsion = 15023.195560 eV Total energy + Delta-G solvation = -2680.348519 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.49706 -39.41608 -36.27174 -35.51509 -34.09877 -30.93284 -29.42605 -28.94758 -27.50105 -26.54904 -23.80948 -22.50696 -21.69672 -20.73093 -18.60000 -18.34504 -17.54719 -16.73240 -16.45314 -16.26015 -15.86081 -15.33614 -14.73978 -14.58226 -14.19624 -13.98194 -13.71001 -13.60495 -13.19570 -12.89634 -12.76216 -12.60391 -12.52031 -12.35787 -12.11677 -12.01355 -11.80443 -11.62845 -11.50523 -11.29699 -11.02991 -10.57359 -9.45844 -8.82525 -8.20057 -6.32722 0.42834 0.53334 1.37787 1.39060 1.52875 2.39976 2.46117 2.80410 3.11649 3.63476 3.73362 3.96443 4.13097 4.21175 4.30896 4.33717 4.39906 4.46924 4.55422 4.68786 4.71142 4.76017 4.80295 4.95197 4.97220 5.08658 5.09148 5.14459 5.34674 5.39150 5.42942 5.44639 5.50567 5.71830 5.80688 5.86042 5.97590 6.22885 6.59327 6.83347 7.36174 8.91858 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020189 B = 0.006889 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.545724 B = 4063.550076 C = 5096.160709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.105 3.895 4 C -0.208 4.208 5 C -0.080 4.080 6 C -0.144 4.144 7 C -0.079 4.079 8 C -0.122 4.122 9 C -0.051 4.051 10 C 0.050 3.950 11 C -0.542 4.542 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.277 1.277 19 C -0.087 4.087 20 C -0.109 4.109 21 C -0.069 4.069 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.154 0.846 26 H 0.155 0.845 27 H 0.049 0.951 28 H 0.057 0.943 29 H -0.014 1.014 30 H -0.021 1.021 31 H 0.264 0.736 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 12.884 -9.357 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.060 3.940 4 C -0.227 4.227 5 C -0.098 4.098 6 C -0.144 4.144 7 C -0.079 4.079 8 C -0.123 4.123 9 C -0.088 4.088 10 C 0.013 3.987 11 C -0.580 4.580 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.202 1.202 19 C -0.124 4.124 20 C -0.147 4.147 21 C -0.106 4.106 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.128 0.872 25 H 0.172 0.828 26 H 0.172 0.828 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.005 0.995 30 H -0.002 1.002 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.909 12.670 -9.186 17.107 hybrid contribution 0.128 -1.186 0.556 1.316 sum -6.782 11.484 -8.630 15.886 Atomic orbital electron populations 1.23303 0.76786 1.05127 1.02197 1.86126 1.23271 1.27293 1.88780 1.18926 0.91629 0.85204 0.98202 1.21349 1.00813 0.91415 1.09076 1.20678 0.93098 0.97675 0.98337 1.20934 0.94123 0.95973 1.03372 1.20502 0.97349 0.91841 0.98236 1.19191 0.91603 0.95691 1.05783 1.20251 0.97222 0.93201 0.98171 1.18749 0.94022 0.94549 0.91388 1.21705 1.33388 1.10144 0.92787 0.92300 1.26021 0.97446 1.01318 0.95018 1.70127 1.47469 1.41830 0.97998 0.85353 0.78222 0.78533 0.78658 1.18556 1.19970 1.20220 1.21111 0.91165 0.98552 1.01612 1.22306 0.97606 0.92633 1.02110 1.21016 0.92529 0.94331 1.02733 0.92125 0.90839 0.87184 0.82830 0.82767 0.93238 0.92404 0.99524 1.00219 0.92749 0.91199 0.91649 0.89863 0.88792 0.89863 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.34 -13.23 9.53 -92.36 -0.88 -14.11 16 3 C 0.11 4.08 6.65 22.48 0.15 4.23 16 4 C -0.21 -6.24 9.04 22.34 0.20 -6.03 16 5 C -0.08 -2.16 10.03 22.29 0.22 -1.94 16 6 C -0.14 -4.28 6.14 -19.56 -0.12 -4.40 16 7 C -0.08 -2.92 6.00 -19.60 -0.12 -3.04 16 8 C -0.12 -5.22 5.15 -19.74 -0.10 -5.32 16 9 C -0.05 -2.49 4.92 29.85 0.15 -2.34 16 10 C 0.05 2.94 4.96 29.85 0.15 3.09 16 11 C -0.54 -33.18 9.11 25.60 0.23 -32.94 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 14 N -0.93 -59.65 13.29 21.45 0.28 -59.36 16 15 Si 0.97 46.15 29.54 68.60 2.03 48.17 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 C -0.09 -2.81 6.27 30.52 0.19 -2.62 16 20 C -0.11 -2.42 7.08 31.51 0.22 -2.19 16 21 C -0.07 -1.50 6.77 30.53 0.21 -1.30 16 22 H 0.06 1.39 7.66 -2.39 -0.02 1.37 16 23 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 24 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.15 3.50 6.31 -2.91 -0.02 3.48 16 26 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 27 H 0.05 2.45 7.52 -2.39 -0.02 2.43 16 28 H 0.06 2.69 7.29 -2.38 -0.02 2.67 16 29 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 30 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 31 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.07 2.26 7.62 -2.39 -0.02 2.24 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -74.84 304.37 5.43 -69.41 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.04 Total: 8.67 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 2.96 Total: -52.77 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.28 Total: -59.36 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.88 Total: -14.11 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.84 5.43 -69.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.615 kcal (2) G-P(sol) polarization free energy of solvation -74.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds