Wall clock time and date at job start Mon Mar 30 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 C 1.50704 * 109.46969 * 239.99997 * 2 1 3 5 5 H 1.07998 * 120.00379 * 239.91306 * 4 2 1 6 6 C 1.37876 * 119.99566 * 59.91332 * 4 2 1 7 7 N 1.31515 * 120.00369 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99888 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 90.00211 * 8 6 4 10 10 H 1.48503 * 109.47307 * 210.00371 * 8 6 4 11 11 H 1.48503 * 109.47102 * 329.99967 * 8 6 4 12 12 C 1.50697 * 109.47324 * 120.00327 * 2 1 3 13 13 C 1.38266 * 120.06778 * 62.79274 * 12 2 1 14 14 C 1.38058 * 119.89304 * 180.13706 * 13 12 2 15 15 C 1.38638 * 120.30160 * 0.22204 * 14 13 12 16 16 C 1.37908 * 119.77925 * 359.28224 * 15 14 13 17 17 C 1.38071 * 120.07121 * 242.81232 * 12 2 1 18 18 C 1.50743 * 121.34861 * 180.90143 * 16 15 14 19 19 C 1.53309 * 109.65301 * 342.40811 * 18 16 15 20 20 O 1.43206 * 108.21099 * 49.67997 * 19 18 16 21 21 C 1.42725 * 113.13552 * 289.04687 * 20 19 18 22 22 H 1.09005 * 109.47114 * 299.99371 * 1 2 3 23 23 H 1.08996 * 109.47463 * 59.99870 * 1 2 3 24 24 H 1.09002 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46735 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47043 * 300.00387 * 3 2 1 27 27 H 1.08998 * 109.47239 * 60.00446 * 3 2 1 28 28 H 0.97005 * 120.00419 * 180.02562 * 7 6 4 29 29 H 1.07995 * 120.05092 * 0.10612 * 13 12 2 30 30 H 1.08000 * 119.84527 * 179.97438 * 14 13 12 31 31 H 1.08009 * 119.85966 * 359.97438 * 17 12 2 32 32 H 1.08993 * 109.42182 * 103.17704 * 18 16 15 33 33 H 1.08999 * 109.41945 * 222.99156 * 18 16 15 34 34 H 1.09006 * 110.04924 * 289.90522 * 19 18 16 35 35 H 1.09004 * 109.66814 * 169.23498 * 19 18 16 36 36 H 1.09002 * 109.34304 * 291.63526 * 21 20 19 37 37 H 1.09004 * 109.21241 * 172.03035 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6543 -1.5877 -1.1315 6 6 1.6977 -0.2403 -2.4827 7 7 0.9406 0.8283 -2.6033 8 14 2.3196 -1.1213 -4.0080 9 1 1.3420 -2.1640 -4.4107 10 1 2.4829 -0.1426 -5.1130 11 1 3.6286 -1.7576 -3.7130 12 6 2.0324 -0.7105 1.2304 13 6 1.7475 -2.0498 1.4218 14 6 2.2071 -2.6964 2.5516 15 6 2.9497 -2.0077 3.4984 16 6 3.2422 -0.6744 3.3020 17 6 2.7777 -0.0252 2.1691 18 6 4.0637 0.1033 4.2984 19 6 4.0957 -0.6450 5.6361 20 8 4.4533 -2.0075 5.3784 21 6 3.4201 -2.7445 4.7254 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.7048 1.1588 -3.4843 29 1 1.1659 -2.5892 0.6888 30 1 1.9838 -3.7426 2.7006 31 1 3.0003 1.0211 2.0195 32 1 5.0766 0.2266 3.9153 33 1 3.6135 1.0839 4.4524 34 1 3.1143 -0.6071 6.1091 35 1 4.8366 -0.1899 6.2934 36 1 2.5825 -2.8765 5.4104 37 1 3.8056 -3.7216 4.4341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260257245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:40 Heat of formation + Delta-G solvation = -35.180819 kcal Electronic energy + Delta-G solvation = -18009.539741 eV Core-core repulsion = 15330.041566 eV Total energy + Delta-G solvation = -2679.498174 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89439 -37.72927 -35.12619 -32.67936 -31.79672 -29.66150 -28.93599 -25.83785 -25.26587 -24.78990 -23.41942 -21.66805 -20.25781 -18.44896 -16.60949 -16.29370 -15.74548 -15.30987 -15.05506 -14.40741 -13.90441 -13.67369 -13.31862 -12.90942 -12.79338 -12.55014 -11.98340 -11.79281 -11.53347 -11.27947 -11.18243 -10.90640 -10.75921 -10.59528 -10.41471 -10.39461 -10.13910 -9.70955 -9.58391 -9.18123 -8.87748 -8.36694 -8.08917 -7.65235 -5.99891 -4.09924 2.01343 2.04517 3.27917 3.35131 3.39322 3.96034 4.34007 4.47669 4.95184 5.06573 5.09836 5.26177 5.31456 5.40956 5.48917 5.68355 5.71177 5.79206 5.99893 6.05425 6.24277 6.30849 6.58119 6.65250 6.71937 6.87372 6.91329 6.98665 6.99067 7.21306 7.26438 7.29568 7.42376 7.64610 7.67738 7.78449 8.05130 8.17385 8.42172 8.90263 9.55217 11.01045 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.006052 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.839378 B = 4625.632697 C = 4859.708489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.093 3.907 3 C -0.133 4.133 4 C -0.499 4.499 5 H 0.056 0.944 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.020 4.020 13 C -0.112 4.112 14 C -0.119 4.119 15 C -0.154 4.154 16 C -0.081 4.081 17 C -0.132 4.132 18 C -0.111 4.111 19 C 0.061 3.939 20 O -0.381 6.381 21 C 0.110 3.890 22 H 0.008 0.992 23 H 0.087 0.913 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.085 0.915 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -2.461 12.205 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.093 3.907 3 C -0.190 4.190 4 C -0.537 4.537 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.020 4.020 13 C -0.130 4.130 14 C -0.137 4.137 15 C -0.154 4.154 16 C -0.081 4.081 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.016 4.016 20 O -0.300 6.300 21 C 0.033 3.967 22 H 0.027 0.973 23 H 0.106 0.894 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.682 -2.423 12.109 12.636 hybrid contribution 0.054 -0.365 -1.094 1.154 sum 2.735 -2.788 11.015 11.687 Atomic orbital electron populations 1.21798 0.96932 0.99219 1.00375 1.17276 0.92569 0.92050 0.88813 1.21886 0.98459 0.98293 1.00364 1.21067 1.31127 1.11976 0.89571 0.92530 1.24907 0.94962 0.94954 0.98777 1.69811 1.36730 1.22788 1.23192 0.86601 0.79310 0.79437 0.82729 1.20699 1.21227 1.19974 1.20633 0.92573 0.93594 0.95241 1.21040 1.00272 0.95023 0.96642 1.20851 0.99213 0.98974 0.94650 1.19894 1.02965 0.94517 0.98045 1.19334 0.99134 0.93317 0.96344 1.21177 0.99755 1.00310 0.93705 1.21102 1.00351 0.98709 0.94615 1.22660 1.00570 0.82436 0.95892 1.88004 1.40666 1.22773 1.78545 1.21312 0.90311 0.94369 0.90681 0.97259 0.89443 0.95365 0.95308 0.89591 0.96995 0.92999 0.85953 0.87049 0.86024 0.90136 0.90321 0.92871 0.88897 0.92657 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.09 37.16 0.30 -2.68 16 2 C 0.09 2.24 0.58 -156.81 -0.09 2.15 16 3 C -0.13 -3.12 6.91 37.16 0.26 -2.86 16 4 C -0.50 -13.23 7.63 -34.44 -0.26 -13.50 16 5 H 0.06 1.53 7.52 -52.49 -0.39 1.13 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.94 9.35 55.43 0.52 -23.42 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 12 C -0.02 -0.44 4.71 -104.67 -0.49 -0.94 16 13 C -0.11 -2.25 8.64 -39.64 -0.34 -2.60 16 14 C -0.12 -2.06 9.67 -39.50 -0.38 -2.44 16 15 C -0.15 -2.59 5.80 -104.62 -0.61 -3.19 16 16 C -0.08 -1.42 5.77 -104.59 -0.60 -2.02 16 17 C -0.13 -2.60 8.62 -39.51 -0.34 -2.94 16 18 C -0.11 -1.53 6.02 -27.70 -0.17 -1.70 16 19 C 0.06 0.74 6.87 37.32 0.26 1.00 16 20 O -0.38 -5.52 10.79 -35.23 -0.38 -5.90 16 21 C 0.11 1.51 6.66 35.98 0.24 1.75 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 24 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 25 H 0.03 0.66 7.65 -51.93 -0.40 0.26 16 26 H 0.09 2.21 6.08 -51.93 -0.32 1.89 16 27 H 0.01 0.24 7.38 -51.93 -0.38 -0.14 16 28 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.12 2.48 7.70 -52.49 -0.40 2.07 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.12 2.32 5.89 -52.48 -0.31 2.01 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -27.98 291.27 -8.25 -36.22 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.42 Total: 1.16 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.33 Total: -28.32 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 0.52 Total: -23.42 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.38 Total: -5.90 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.98 -8.25 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260257245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.042 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds