Wall clock time and date at job start Mon Mar 30 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47152 * 2 1 4 4 C 1.50704 * 109.46969 * 239.99997 * 2 1 3 5 5 H 1.07998 * 120.00379 * 239.91306 * 4 2 1 6 6 C 1.37876 * 119.99566 * 59.91332 * 4 2 1 7 7 N 1.31515 * 120.00369 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99888 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 90.00211 * 8 6 4 10 10 H 1.48503 * 109.47307 * 210.00371 * 8 6 4 11 11 H 1.48503 * 109.47102 * 329.99967 * 8 6 4 12 12 C 1.50697 * 109.47324 * 120.00327 * 2 1 3 13 13 C 1.38266 * 120.06778 * 62.79274 * 12 2 1 14 14 C 1.38058 * 119.89304 * 180.13706 * 13 12 2 15 15 C 1.38638 * 120.30160 * 0.22204 * 14 13 12 16 16 C 1.37908 * 119.77925 * 359.28224 * 15 14 13 17 17 C 1.38071 * 120.07121 * 242.81232 * 12 2 1 18 18 C 1.50743 * 121.34861 * 180.90143 * 16 15 14 19 19 C 1.53309 * 109.65301 * 342.40811 * 18 16 15 20 20 O 1.43206 * 108.21099 * 49.67997 * 19 18 16 21 21 C 1.42725 * 113.13552 * 289.04687 * 20 19 18 22 22 H 1.09005 * 109.47114 * 299.99371 * 1 2 3 23 23 H 1.08996 * 109.47463 * 59.99870 * 1 2 3 24 24 H 1.09002 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46735 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47043 * 300.00387 * 3 2 1 27 27 H 1.08998 * 109.47239 * 60.00446 * 3 2 1 28 28 H 0.97005 * 120.00419 * 180.02562 * 7 6 4 29 29 H 1.07995 * 120.05092 * 0.10612 * 13 12 2 30 30 H 1.08000 * 119.84527 * 179.97438 * 14 13 12 31 31 H 1.08009 * 119.85966 * 359.97438 * 17 12 2 32 32 H 1.08993 * 109.42182 * 103.17704 * 18 16 15 33 33 H 1.08999 * 109.41945 * 222.99156 * 18 16 15 34 34 H 1.09006 * 110.04924 * 289.90522 * 19 18 16 35 35 H 1.09004 * 109.66814 * 169.23498 * 19 18 16 36 36 H 1.09002 * 109.34304 * 291.63526 * 21 20 19 37 37 H 1.09004 * 109.21241 * 172.03035 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6543 -1.5877 -1.1315 6 6 1.6977 -0.2403 -2.4827 7 7 0.9406 0.8283 -2.6033 8 14 2.3196 -1.1213 -4.0080 9 1 1.3420 -2.1640 -4.4107 10 1 2.4829 -0.1426 -5.1130 11 1 3.6286 -1.7576 -3.7130 12 6 2.0324 -0.7105 1.2304 13 6 1.7475 -2.0498 1.4218 14 6 2.2071 -2.6964 2.5516 15 6 2.9497 -2.0077 3.4984 16 6 3.2422 -0.6744 3.3020 17 6 2.7777 -0.0252 2.1691 18 6 4.0637 0.1033 4.2984 19 6 4.0957 -0.6450 5.6361 20 8 4.4533 -2.0075 5.3784 21 6 3.4201 -2.7445 4.7254 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.7048 1.1588 -3.4843 29 1 1.1659 -2.5892 0.6888 30 1 1.9838 -3.7426 2.7006 31 1 3.0003 1.0211 2.0195 32 1 5.0766 0.2266 3.9153 33 1 3.6135 1.0839 4.4524 34 1 3.1143 -0.6071 6.1091 35 1 4.8366 -0.1899 6.2934 36 1 2.5825 -2.8765 5.4104 37 1 3.8056 -3.7216 4.4341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260257245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:40 Heat of formation + Delta-G solvation = -49.282222 kcal Electronic energy + Delta-G solvation = -18010.151224 eV Core-core repulsion = 15330.041566 eV Total energy + Delta-G solvation = -2680.109657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18663 -39.08342 -36.77752 -33.88116 -33.63624 -31.14394 -30.28042 -27.66411 -27.23975 -26.14084 -24.58570 -23.12691 -21.75444 -20.04362 -18.02551 -17.80385 -17.14701 -16.77646 -16.42979 -15.86768 -15.31696 -15.13735 -14.79032 -14.48684 -14.09518 -13.94392 -13.60284 -13.27899 -13.08280 -12.94304 -12.89528 -12.70320 -12.39087 -12.23114 -12.07369 -11.93596 -11.73467 -11.37006 -11.18752 -10.79082 -10.51706 -10.38527 -9.50570 -9.13325 -8.01735 -6.17929 0.58428 0.60592 1.39866 1.42396 1.50942 2.43492 2.92557 3.03116 3.21107 3.82897 3.87610 4.00876 4.17782 4.35158 4.37086 4.49595 4.57615 4.64399 4.74611 4.79599 4.82054 4.89905 5.00042 5.01625 5.06169 5.09454 5.28176 5.33299 5.40085 5.57811 5.60731 5.66349 5.75451 5.87131 6.13424 6.19625 6.26101 6.31065 6.45547 6.86581 7.49122 8.96825 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.006052 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.839378 B = 4625.632697 C = 4859.708489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.086 3.914 3 C -0.121 4.121 4 C -0.513 4.513 5 H 0.043 0.957 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.277 1.277 12 C -0.050 4.050 13 C -0.132 4.132 14 C -0.114 4.114 15 C -0.153 4.153 16 C -0.086 4.086 17 C -0.145 4.145 18 C -0.112 4.112 19 C 0.060 3.940 20 O -0.395 6.395 21 C 0.110 3.890 22 H 0.021 0.979 23 H 0.063 0.937 24 H 0.025 0.975 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.110 0.890 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -3.331 14.232 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.086 3.914 3 C -0.178 4.178 4 C -0.551 4.551 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.202 1.202 12 C -0.050 4.050 13 C -0.150 4.150 14 C -0.131 4.131 15 C -0.153 4.153 16 C -0.086 4.086 17 C -0.163 4.163 18 C -0.149 4.149 19 C -0.016 4.016 20 O -0.313 6.313 21 C 0.034 3.966 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.161 0.839 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.097 0.903 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.503 -3.291 14.141 14.936 hybrid contribution -0.184 -0.102 -1.648 1.661 sum 3.318 -3.393 12.494 13.365 Atomic orbital electron populations 1.21649 0.97162 0.98825 0.99692 1.17249 0.92519 0.92198 0.89448 1.21724 0.97970 0.98235 0.99908 1.21272 1.31030 1.11788 0.91046 0.93908 1.25523 0.95280 0.95642 1.01048 1.69929 1.37286 1.23531 1.23550 0.85761 0.78634 0.78541 0.79905 1.20226 1.20837 1.20189 1.20479 0.94783 0.94509 0.95230 1.21037 1.01389 0.94700 0.97888 1.21149 0.98164 1.00409 0.93424 1.20379 1.01592 0.94443 0.98899 1.19758 0.98674 0.94065 0.96152 1.21235 1.00155 1.00428 0.94481 1.21203 0.99697 0.99297 0.94687 1.22852 1.02282 0.81307 0.95149 1.88001 1.41173 1.23800 1.78361 1.21455 0.91150 0.94425 0.89600 0.96020 0.91780 0.95562 0.95791 0.92051 0.95214 0.93060 0.87210 0.83910 0.86167 0.90049 0.88778 0.91733 0.86089 0.90348 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.09 71.98 0.58 -5.03 16 2 C 0.09 4.24 0.58 -53.68 -0.03 4.21 16 3 C -0.12 -5.81 6.91 71.98 0.50 -5.31 16 4 C -0.51 -27.90 7.63 25.60 0.20 -27.70 16 5 H 0.04 2.38 7.52 -2.91 -0.02 2.36 16 6 C 0.02 1.30 5.15 84.65 0.44 1.74 16 7 N -0.90 -49.91 9.35 21.45 0.20 -49.70 16 8 Si 0.94 43.45 29.54 68.60 2.03 45.48 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 C -0.05 -2.20 4.71 -19.90 -0.09 -2.29 16 13 C -0.13 -5.33 8.64 22.23 0.19 -5.14 16 14 C -0.11 -3.72 9.67 22.32 0.22 -3.50 16 15 C -0.15 -4.73 5.80 -19.86 -0.12 -4.85 16 16 C -0.09 -2.86 5.77 -19.84 -0.11 -2.97 16 17 C -0.15 -5.67 8.62 22.31 0.19 -5.48 16 18 C -0.11 -2.78 6.02 29.97 0.18 -2.60 16 19 C 0.06 1.23 6.87 72.09 0.50 1.73 16 20 O -0.39 -9.91 10.79 -148.98 -1.61 -11.51 16 21 C 0.11 2.60 6.66 71.22 0.47 3.08 16 22 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.06 3.39 6.06 -2.39 -0.01 3.37 16 24 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 25 H 0.02 1.11 7.65 -2.38 -0.02 1.09 16 26 H 0.06 3.24 6.08 -2.39 -0.01 3.22 16 27 H 0.03 1.26 7.38 -2.39 -0.02 1.25 16 28 H 0.26 13.76 8.31 -92.70 -0.77 12.99 16 29 H 0.11 4.57 7.70 -2.91 -0.02 4.55 16 30 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.12 4.58 5.89 -2.91 -0.02 4.56 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.19 8.07 -2.38 -0.02 1.17 16 35 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -60.42 291.27 4.77 -55.65 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.05 Total: 14.22 kcal Atomic # 6 Polarization: -57.22 SS G_CDS: 3.11 Total: -54.12 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.20 Total: -49.70 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -1.61 Total: -11.51 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -60.42 4.77 -55.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260257245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.363 kcal (2) G-P(sol) polarization free energy of solvation -60.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds