Wall clock time and date at job start Mon Mar 30 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99639 * 2 1 4 4 C 1.38471 * 119.78891 * 269.98163 * 3 2 1 5 5 C 1.50698 * 120.14679 * 359.97438 * 4 3 2 6 6 C 1.50699 * 109.47036 * 85.00129 * 5 4 3 7 7 H 1.08007 * 119.99884 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00392 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99751 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00279 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47326 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46894 * 120.00539 * 10 8 6 13 13 H 1.48501 * 109.47123 * 240.00271 * 10 8 6 14 14 C 1.38138 * 119.71045 * 180.02562 * 4 3 2 15 15 C 1.38007 * 119.82933 * 0.12363 * 14 4 3 16 16 C 1.38906 * 120.66291 * 0.02562 * 15 14 4 17 17 C 1.37610 * 119.71844 * 359.73340 * 16 15 14 18 18 C 1.50624 * 122.57381 * 180.72196 * 17 16 15 19 19 C 1.52732 * 110.59224 * 341.98279 * 18 17 16 20 20 C 1.53323 * 108.38768 * 51.14082 * 19 18 17 21 21 C 1.50643 * 117.73313 * 179.39587 * 16 15 14 22 22 H 1.09002 * 109.47069 * 299.99079 * 1 2 3 23 23 H 1.09001 * 109.47465 * 59.99769 * 1 2 3 24 24 H 1.09006 * 109.46890 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47248 * 205.00054 * 5 4 3 26 26 H 1.08996 * 109.46905 * 325.00435 * 5 4 3 27 27 H 0.97001 * 120.00098 * 179.97438 * 9 8 6 28 28 H 1.07994 * 120.08480 * 180.10264 * 14 4 3 29 29 H 1.08000 * 119.66395 * 180.02562 * 15 14 4 30 30 H 1.09007 * 109.25448 * 102.27434 * 18 17 16 31 31 H 1.08997 * 109.25239 * 221.69496 * 18 17 16 32 32 H 1.09000 * 109.68503 * 291.41314 * 19 18 17 33 33 H 1.09004 * 109.68440 * 170.86139 * 19 18 17 34 34 H 1.09001 * 109.67910 * 170.46989 * 20 19 18 35 35 H 1.09002 * 109.67886 * 49.92387 * 20 19 18 36 36 H 1.09002 * 109.25272 * 282.62795 * 21 16 15 37 37 H 1.09007 * 109.25208 * 42.05355 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3585 1.8237 -1.2017 5 6 2.0167 1.1506 -2.5060 6 6 0.5927 1.4728 -2.8795 7 1 -0.0049 2.1024 -2.2368 8 6 0.0531 0.9647 -4.0420 9 7 0.7809 0.1984 -4.8248 10 14 -1.7123 1.3634 -4.5045 11 1 -2.3111 2.2380 -3.4645 12 1 -1.7347 2.0648 -5.8134 13 1 -2.4943 0.1049 -4.6039 14 6 2.9861 3.0543 -1.1998 15 6 3.2994 3.6633 -0.0017 16 6 2.9905 3.0510 1.2063 17 6 2.3609 1.8273 1.2095 18 6 1.9822 1.1135 2.4806 19 6 2.7601 1.6797 3.6668 20 6 2.6023 3.2047 3.6652 21 6 3.3748 3.7680 2.4741 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 2.6873 1.5096 -3.2868 26 1 2.1289 0.0718 -2.3983 27 1 0.4011 -0.1594 -5.6425 28 1 3.2312 3.5385 -2.1336 29 1 3.7896 4.6256 -0.0033 30 1 0.9140 1.2386 2.6585 31 1 2.2067 0.0520 2.3772 32 1 3.8144 1.4196 3.5723 33 1 2.3625 1.2705 4.5956 34 1 3.0040 3.6163 4.5911 35 1 1.5475 3.4645 3.5746 36 1 4.4437 3.6434 2.6476 37 1 3.1497 4.8294 2.3692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260278197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:45 Heat of formation + Delta-G solvation = -42.934009 kcal Electronic energy + Delta-G solvation = -18094.339628 eV Core-core repulsion = 15414.505250 eV Total energy + Delta-G solvation = -2679.834378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.93436 -37.27048 -35.65772 -33.14764 -31.47177 -30.67845 -28.56483 -27.25878 -25.60413 -23.69880 -22.86062 -21.52573 -20.86256 -18.73172 -16.69866 -16.37098 -15.83236 -15.04507 -14.90195 -14.36483 -14.28073 -13.74582 -13.63471 -13.09490 -12.88965 -12.51157 -12.25873 -12.12407 -11.67578 -11.60138 -11.33720 -10.99008 -10.85275 -10.78022 -10.59406 -10.50748 -10.35189 -10.12898 -9.58664 -9.35709 -8.96754 -8.42370 -7.90576 -7.56803 -6.04501 -4.07586 1.87522 2.04102 3.26251 3.34510 3.37821 4.11344 4.41567 4.74202 4.88580 4.97099 5.00060 5.28810 5.36066 5.46219 5.63450 5.70328 5.71370 5.74045 5.91840 5.92505 5.96814 6.09422 6.14319 6.18520 6.24656 6.33779 6.40608 6.49627 6.62910 6.75021 7.05025 7.15875 7.21308 7.45254 7.60774 7.86526 7.91831 8.29887 8.38660 8.96193 9.54160 11.05257 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032020 B = 0.006606 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.236491 B = 4237.379807 C = 4570.005047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.331 6.331 3 C 0.088 3.912 4 C -0.053 4.053 5 C 0.051 3.949 6 C -0.506 4.506 7 H 0.055 0.945 8 C 0.060 3.940 9 N -0.890 5.890 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C -0.116 4.116 15 C -0.129 4.129 16 C -0.099 4.099 17 C -0.098 4.098 18 C -0.073 4.073 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.071 4.071 22 H 0.026 0.974 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.261 0.739 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 4.466 14.331 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.248 6.248 3 C 0.044 3.956 4 C -0.054 4.054 5 C 0.014 3.986 6 C -0.544 4.544 7 H 0.073 0.927 8 C -0.141 4.141 9 N -0.529 5.529 10 Si 0.717 3.283 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 C -0.134 4.134 15 C -0.147 4.147 16 C -0.099 4.099 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.108 4.108 22 H 0.045 0.955 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.817 4.182 14.163 15.034 hybrid contribution -1.154 0.378 -0.525 1.323 sum 1.663 4.561 13.639 14.477 Atomic orbital electron populations 1.23063 0.79436 1.02309 1.01367 1.85864 1.19690 1.24941 1.94297 1.18528 0.98843 0.86970 0.91248 1.20953 0.93688 0.93613 0.97133 1.18259 0.96758 0.96301 0.87245 1.20998 0.96650 1.30559 1.06217 0.92692 1.24983 0.97705 0.95118 0.96339 1.69968 1.36323 1.33385 1.13205 0.86582 0.84974 0.78214 0.78581 1.19719 1.20882 1.20868 1.20925 0.99640 0.95292 0.97521 1.21024 1.01804 0.99754 0.92167 1.19198 1.01580 0.94572 0.94534 1.19732 1.01425 0.94433 0.94295 1.20281 0.99530 0.99695 0.91456 1.21531 1.00680 0.95534 0.97688 1.21534 1.00677 0.95870 0.97524 1.20345 0.99730 0.98732 0.92013 0.95490 0.90499 0.90188 0.95510 0.94482 0.92894 0.86144 0.87029 0.91564 0.90582 0.91804 0.91977 0.92015 0.91848 0.91369 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.08 101.05 1.12 1.74 16 2 O -0.33 -7.12 8.57 -19.43 -0.17 -7.28 16 3 C 0.09 1.86 5.65 -39.08 -0.22 1.64 16 4 C -0.05 -1.22 5.08 -104.57 -0.53 -1.75 16 5 C 0.05 1.35 4.83 -29.04 -0.14 1.21 16 6 C -0.51 -13.95 7.26 -34.44 -0.25 -14.20 16 7 H 0.05 1.51 7.31 -52.48 -0.38 1.13 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 10 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C -0.12 -2.31 9.69 -39.70 -0.38 -2.70 16 15 C -0.13 -2.21 9.60 -39.42 -0.38 -2.59 16 16 C -0.10 -1.63 5.74 -104.63 -0.60 -2.23 16 17 C -0.10 -1.77 5.75 -104.47 -0.60 -2.37 16 18 C -0.07 -1.08 5.23 -28.06 -0.15 -1.22 16 19 C -0.12 -1.38 5.98 -26.70 -0.16 -1.54 16 20 C -0.12 -1.33 5.98 -26.70 -0.16 -1.49 16 21 C -0.07 -0.89 5.67 -28.05 -0.16 -1.05 16 22 H 0.03 0.45 7.75 -51.93 -0.40 0.04 16 23 H 0.08 1.68 5.63 -51.93 -0.29 1.38 16 24 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 26 H 0.04 1.06 7.68 -51.93 -0.40 0.66 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 29 H 0.11 1.58 8.05 -52.49 -0.42 1.15 16 30 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 31 H 0.08 1.16 7.75 -51.93 -0.40 0.76 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 298.94 15.07 4.51 4.51 Total: -1.00 -29.91 298.94 -8.29 -38.20 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.64 Total: -1.15 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -2.71 Total: -24.97 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.17 Total: -7.28 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.91 -8.29 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.731 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds