Wall clock time and date at job start Mon Mar 30 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99639 * 2 1 4 4 C 1.38471 * 119.78891 * 269.98163 * 3 2 1 5 5 C 1.50698 * 120.14679 * 359.97438 * 4 3 2 6 6 C 1.50699 * 109.47036 * 85.00129 * 5 4 3 7 7 H 1.08007 * 119.99884 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00392 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99751 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00279 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47326 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46894 * 120.00539 * 10 8 6 13 13 H 1.48501 * 109.47123 * 240.00271 * 10 8 6 14 14 C 1.38138 * 119.71045 * 180.02562 * 4 3 2 15 15 C 1.38007 * 119.82933 * 0.12363 * 14 4 3 16 16 C 1.38906 * 120.66291 * 0.02562 * 15 14 4 17 17 C 1.37610 * 119.71844 * 359.73340 * 16 15 14 18 18 C 1.50624 * 122.57381 * 180.72196 * 17 16 15 19 19 C 1.52732 * 110.59224 * 341.98279 * 18 17 16 20 20 C 1.53323 * 108.38768 * 51.14082 * 19 18 17 21 21 C 1.50643 * 117.73313 * 179.39587 * 16 15 14 22 22 H 1.09002 * 109.47069 * 299.99079 * 1 2 3 23 23 H 1.09001 * 109.47465 * 59.99769 * 1 2 3 24 24 H 1.09006 * 109.46890 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47248 * 205.00054 * 5 4 3 26 26 H 1.08996 * 109.46905 * 325.00435 * 5 4 3 27 27 H 0.97001 * 120.00098 * 179.97438 * 9 8 6 28 28 H 1.07994 * 120.08480 * 180.10264 * 14 4 3 29 29 H 1.08000 * 119.66395 * 180.02562 * 15 14 4 30 30 H 1.09007 * 109.25448 * 102.27434 * 18 17 16 31 31 H 1.08997 * 109.25239 * 221.69496 * 18 17 16 32 32 H 1.09000 * 109.68503 * 291.41314 * 19 18 17 33 33 H 1.09004 * 109.68440 * 170.86139 * 19 18 17 34 34 H 1.09001 * 109.67910 * 170.46989 * 20 19 18 35 35 H 1.09002 * 109.67886 * 49.92387 * 20 19 18 36 36 H 1.09002 * 109.25272 * 282.62795 * 21 16 15 37 37 H 1.09007 * 109.25208 * 42.05355 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3585 1.8237 -1.2017 5 6 2.0167 1.1506 -2.5060 6 6 0.5927 1.4728 -2.8795 7 1 -0.0049 2.1024 -2.2368 8 6 0.0531 0.9647 -4.0420 9 7 0.7809 0.1984 -4.8248 10 14 -1.7123 1.3634 -4.5045 11 1 -2.3111 2.2380 -3.4645 12 1 -1.7347 2.0648 -5.8134 13 1 -2.4943 0.1049 -4.6039 14 6 2.9861 3.0543 -1.1998 15 6 3.2994 3.6633 -0.0017 16 6 2.9905 3.0510 1.2063 17 6 2.3609 1.8273 1.2095 18 6 1.9822 1.1135 2.4806 19 6 2.7601 1.6797 3.6668 20 6 2.6023 3.2047 3.6652 21 6 3.3748 3.7680 2.4741 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 2.6873 1.5096 -3.2868 26 1 2.1289 0.0718 -2.3983 27 1 0.4011 -0.1594 -5.6425 28 1 3.2312 3.5385 -2.1336 29 1 3.7896 4.6256 -0.0033 30 1 0.9140 1.2386 2.6585 31 1 2.2067 0.0520 2.3772 32 1 3.8144 1.4196 3.5723 33 1 2.3625 1.2705 4.5956 34 1 3.0040 3.6163 4.5911 35 1 1.5475 3.4645 3.5746 36 1 4.4437 3.6434 2.6476 37 1 3.1497 4.8294 2.3692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260278197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:45 Heat of formation + Delta-G solvation = -58.887755 kcal Electronic energy + Delta-G solvation = -18095.031435 eV Core-core repulsion = 15414.505250 eV Total energy + Delta-G solvation = -2680.526184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36645 -38.67179 -37.07366 -35.15024 -32.83929 -32.22174 -29.95830 -28.95628 -27.20873 -25.40001 -24.16483 -22.88967 -22.33835 -20.00817 -18.55884 -18.16175 -17.28757 -16.71905 -16.49461 -15.86836 -15.57543 -15.04653 -14.63422 -14.50353 -14.40395 -14.34308 -13.59470 -13.56814 -13.44270 -13.06650 -12.89071 -12.68214 -12.54543 -12.27301 -12.13333 -11.71051 -11.67888 -11.41827 -11.26811 -11.24014 -10.62161 -10.52815 -9.35842 -9.14298 -8.19949 -6.32371 0.38679 0.54824 1.36240 1.36905 1.49647 2.36601 2.64705 3.09726 3.24029 3.79078 3.85977 4.09754 4.19135 4.28567 4.32899 4.41445 4.50975 4.62391 4.63541 4.68780 4.76747 4.88709 4.97017 5.01464 5.05190 5.13901 5.14908 5.21672 5.29611 5.32186 5.46573 5.50770 5.64755 5.74167 5.77231 5.95773 6.03770 6.16550 6.77391 6.79753 7.33992 8.89730 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032020 B = 0.006606 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.236491 B = 4237.379807 C = 4570.005047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.350 6.350 3 C 0.067 3.933 4 C -0.095 4.095 5 C 0.066 3.934 6 C -0.511 4.511 7 H 0.052 0.948 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.275 1.275 14 C -0.130 4.130 15 C -0.122 4.122 16 C -0.090 4.090 17 C -0.103 4.103 18 C -0.072 4.072 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.072 4.072 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.099 0.901 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.265 0.735 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 6.336 17.292 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.268 6.268 3 C 0.024 3.976 4 C -0.095 4.095 5 C 0.029 3.971 6 C -0.549 4.549 7 H 0.070 0.930 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.200 1.200 14 C -0.148 4.148 15 C -0.140 4.140 16 C -0.090 4.090 17 C -0.103 4.103 18 C -0.109 4.109 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.108 4.108 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.117 0.883 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.136 0.864 29 H 0.167 0.833 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.406 6.060 17.137 18.335 hybrid contribution -0.955 -0.197 -1.382 1.692 sum 1.451 5.863 15.755 16.873 Atomic orbital electron populations 1.23092 0.78566 1.03485 1.00902 1.85823 1.20771 1.25751 1.94422 1.18796 0.99606 0.87159 0.92051 1.20748 0.97317 0.95500 0.95960 1.17901 0.96064 0.94139 0.88967 1.21187 0.97203 1.30222 1.06251 0.92967 1.25888 1.02327 0.94800 0.96181 1.70103 1.38524 1.34616 1.13804 0.85469 0.79353 0.78322 0.78401 1.18737 1.20225 1.20037 1.21004 1.00090 0.94600 0.99096 1.21396 1.00685 1.00814 0.91062 1.19800 0.99019 0.93746 0.96400 1.20102 1.00893 0.95042 0.94272 1.20342 1.00379 0.98932 0.91271 1.21543 1.00253 0.96220 0.96989 1.21561 1.00504 0.95082 0.98213 1.20490 1.00960 0.99274 0.90117 0.92931 0.93785 0.88262 0.98379 0.98348 0.92643 0.86392 0.83294 0.91046 0.91647 0.91734 0.89647 0.88962 0.92203 0.89541 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.30 11.08 113.37 1.26 2.56 16 2 O -0.35 -15.64 8.57 -92.44 -0.79 -16.43 16 3 C 0.07 2.93 5.65 22.59 0.13 3.05 16 4 C -0.09 -4.53 5.08 -19.83 -0.10 -4.63 16 5 C 0.07 3.76 4.83 29.10 0.14 3.90 16 6 C -0.51 -29.54 7.26 25.60 0.19 -29.35 16 7 H 0.05 2.98 7.31 -2.91 -0.02 2.96 16 8 C 0.01 0.35 5.46 84.65 0.46 0.81 16 9 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 10 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 C -0.13 -5.29 9.69 22.19 0.21 -5.08 16 15 C -0.12 -3.91 9.60 22.38 0.21 -3.70 16 16 C -0.09 -2.71 5.74 -19.87 -0.11 -2.82 16 17 C -0.10 -3.58 5.75 -19.77 -0.11 -3.69 16 18 C -0.07 -1.99 5.23 29.73 0.16 -1.84 16 19 C -0.11 -2.23 5.98 30.61 0.18 -2.04 16 20 C -0.12 -2.03 5.98 30.61 0.18 -1.85 16 21 C -0.07 -1.45 5.67 29.74 0.17 -1.28 16 22 H 0.05 1.72 7.75 -2.39 -0.02 1.70 16 23 H 0.04 1.99 5.63 -2.39 -0.01 1.98 16 24 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 25 H 0.00 -0.13 8.05 -2.38 -0.02 -0.15 16 26 H 0.00 -0.11 7.68 -2.39 -0.02 -0.13 16 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.15 3.63 8.05 -2.91 -0.02 3.61 16 30 H 0.07 1.89 7.76 -2.38 -0.02 1.87 16 31 H 0.06 1.93 7.75 -2.39 -0.02 1.92 16 32 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.50 8.12 -2.38 -0.02 1.48 16 Total: -1.00 -68.76 298.94 5.52 -63.23 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.04 Total: 9.60 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 2.96 Total: -45.95 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.28 Total: -56.95 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.79 Total: -16.43 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.76 5.52 -63.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.346 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds