Wall clock time and date at job start Mon Mar 30 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47083 * 2 1 4 4 C 1.50700 * 109.47105 * 239.99856 * 2 1 3 5 5 H 1.08002 * 120.00035 * 240.00454 * 4 2 1 6 6 C 1.37878 * 119.99907 * 59.99766 * 4 2 1 7 7 N 1.31517 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99841 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47156 * 90.00448 * 8 6 4 10 10 H 1.48508 * 109.46978 * 210.00151 * 8 6 4 11 11 H 1.48501 * 109.47282 * 330.00148 * 8 6 4 12 12 C 1.50703 * 109.47160 * 120.00100 * 2 1 3 13 13 C 1.38265 * 119.94041 * 239.99862 * 12 2 1 14 14 C 1.38150 * 120.05296 * 179.97438 * 13 12 2 15 15 C 1.38731 * 119.94616 * 0.02562 * 14 13 12 16 16 O 1.35897 * 120.05696 * 179.97438 * 15 14 13 17 17 C 1.42904 * 116.99794 * 359.97438 * 16 15 14 18 18 C 1.53001 * 109.46852 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49877 * 243.74545 * 18 17 16 20 20 C 1.52993 * 117.49823 * 175.08644 * 18 17 16 21 21 C 1.38731 * 119.88653 * 359.97000 * 15 14 13 22 22 C 1.38147 * 119.94605 * 0.02759 * 21 15 14 23 23 H 1.09001 * 109.46731 * 300.00002 * 1 2 3 24 24 H 1.08997 * 109.47037 * 59.99712 * 1 2 3 25 25 H 1.08995 * 109.46879 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99908 * 179.97438 * 7 6 4 27 27 H 1.08002 * 119.97507 * 359.72598 * 13 12 2 28 28 H 1.08002 * 120.02581 * 179.97438 * 14 13 12 29 29 H 1.09004 * 109.46738 * 299.99812 * 17 16 15 30 30 H 1.08997 * 109.47288 * 60.00087 * 17 16 15 31 31 H 1.09003 * 115.54769 * 29.41955 * 18 17 16 32 32 H 1.08992 * 117.50045 * 0.02562 * 19 18 17 33 33 H 1.09001 * 117.49498 * 145.01953 * 19 18 17 34 34 H 1.09007 * 117.50150 * 214.97924 * 20 18 17 35 35 H 1.08998 * 117.50106 * 359.97438 * 20 18 17 36 36 H 1.07999 * 120.02746 * 180.02562 * 21 15 14 37 37 H 1.07998 * 119.97416 * 179.97438 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1415 -5.1123 11 1 3.6292 -1.7585 -3.7122 12 6 2.0324 -0.7104 1.2305 13 6 2.8272 -0.0373 2.1398 14 6 3.2886 -0.6862 3.2688 15 6 2.9541 -2.0144 3.4895 16 8 3.4072 -2.6550 4.5991 17 6 4.2241 -1.8998 5.4961 18 6 4.6357 -2.7821 6.6764 19 6 4.1392 -2.3792 8.0664 20 6 5.6119 -2.1896 7.6946 21 6 2.1564 -2.6874 2.5757 22 6 1.6975 -2.0341 1.4482 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7094 1.1617 -3.4844 27 1 3.0910 0.9954 1.9653 28 1 3.9098 -0.1601 3.9786 29 1 5.1158 -1.5550 4.9724 30 1 3.6628 -1.0404 5.8627 31 1 4.7185 -3.8473 6.4606 32 1 3.5191 -1.4860 8.1399 33 1 3.8957 -3.1795 8.7652 34 1 6.3367 -2.8651 8.1491 35 1 5.9613 -1.1714 7.5234 36 1 1.8943 -3.7213 2.7454 37 1 1.0768 -2.5578 0.7363 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260281541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:49 Heat of formation + Delta-G solvation = -2.519752 kcal Electronic energy + Delta-G solvation = -16972.968133 eV Core-core repulsion = 14294.886248 eV Total energy + Delta-G solvation = -2678.081884 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75458 -37.93840 -36.67478 -33.94086 -31.11731 -30.45928 -28.23477 -26.89547 -25.09302 -22.68612 -22.46201 -22.08022 -20.63473 -19.55004 -17.82778 -16.44767 -16.04638 -15.52963 -15.11978 -14.76961 -14.36390 -14.01207 -13.64108 -12.94039 -12.77288 -12.57460 -12.27839 -11.82682 -11.76607 -11.50877 -11.29642 -11.10032 -10.89718 -10.74151 -10.60486 -10.42210 -10.22287 -10.03004 -9.95324 -9.40533 -8.93353 -8.36240 -8.34337 -7.32325 -5.99474 -4.06175 1.99599 2.16652 3.22672 3.30897 3.37644 3.41831 3.62789 4.39582 4.52624 4.54353 4.61897 4.78398 5.04401 5.20962 5.31018 5.34304 5.39174 5.44510 5.48792 5.59755 5.81386 5.87272 5.98270 6.08445 6.17285 6.36201 6.60706 6.86631 6.88704 6.95889 7.20838 7.22811 7.38418 7.47739 7.74262 7.89875 8.00254 8.12195 8.42273 8.96777 9.58481 11.06002 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046547 B = 0.004098 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.393181 B = 6831.711344 C = 6989.705725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.073 3.927 3 H 0.033 0.967 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.063 4.063 13 C -0.095 4.095 14 C -0.209 4.209 15 C 0.095 3.905 16 O -0.320 6.320 17 C 0.093 3.907 18 C -0.154 4.154 19 C -0.177 4.177 20 C -0.172 4.172 21 C -0.154 4.154 22 C -0.074 4.074 23 H 0.008 0.992 24 H 0.085 0.915 25 H 0.028 0.972 26 H 0.260 0.740 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 -4.336 16.408 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 H 0.051 0.949 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.063 4.063 13 C -0.113 4.113 14 C -0.228 4.228 15 C 0.051 3.949 16 O -0.235 6.235 17 C 0.018 3.982 18 C -0.172 4.172 19 C -0.214 4.214 20 C -0.209 4.209 21 C -0.172 4.172 22 C -0.092 4.092 23 H 0.027 0.973 24 H 0.103 0.897 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.360 -4.410 16.328 17.743 hybrid contribution 0.474 -0.210 -0.848 0.994 sum 5.834 -4.620 15.480 17.176 Atomic orbital electron populations 1.21794 0.97743 0.99260 1.00201 1.17845 0.92778 0.95328 0.88562 0.94872 1.21153 1.31067 1.12338 0.89930 0.92449 1.24965 0.95089 0.94997 0.98939 1.69889 1.36821 1.22885 1.23370 0.86591 0.79333 0.79413 0.82685 1.20659 1.21256 1.19891 1.20612 0.95141 0.94075 0.96492 1.20931 0.97474 0.99633 0.93283 1.21064 1.06467 0.94296 1.00975 1.18808 0.97195 0.91480 0.87404 1.85969 1.65476 1.40168 1.31858 1.22158 0.93869 0.93277 0.88916 1.22121 1.04606 1.00853 0.89600 1.23100 0.96891 1.03539 0.97898 1.22989 0.93034 1.02441 1.02472 1.20374 1.01684 1.00132 0.95058 1.20926 0.98483 0.94601 0.95187 0.97300 0.89680 0.95291 0.92984 0.86454 0.86753 0.91929 0.92252 0.86696 0.88541 0.88537 0.88307 0.88534 0.86293 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.78 37.16 0.33 -2.87 16 2 C 0.07 1.83 2.48 -92.92 -0.23 1.60 16 3 H 0.03 0.89 7.87 -51.93 -0.41 0.48 16 4 C -0.51 -13.81 8.24 -34.44 -0.28 -14.10 16 5 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.06 -1.38 4.74 -104.60 -0.50 -1.88 16 13 C -0.10 -1.86 9.66 -39.60 -0.38 -2.24 16 14 C -0.21 -3.63 9.04 -39.43 -0.36 -3.99 16 15 C 0.09 1.68 6.69 -39.22 -0.26 1.42 16 16 O -0.32 -5.08 10.14 -19.42 -0.20 -5.28 16 17 C 0.09 1.14 5.02 37.16 0.19 1.32 16 18 C -0.15 -1.54 6.05 -90.62 -0.55 -2.09 16 19 C -0.18 -1.49 10.18 -26.70 -0.27 -1.76 16 20 C -0.17 -1.35 10.25 -26.70 -0.27 -1.62 16 21 C -0.15 -2.82 9.99 -39.43 -0.39 -3.21 16 22 C -0.07 -1.50 8.70 -39.61 -0.34 -1.85 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 25 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.12 2.15 7.94 -52.49 -0.42 1.73 16 28 H 0.11 1.65 6.30 -52.49 -0.33 1.32 16 29 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 30 H 0.06 0.68 7.40 -51.93 -0.38 0.30 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.13 2.59 7.57 -52.49 -0.40 2.20 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -28.88 308.35 -8.89 -37.77 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.52 Total: 0.93 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -3.43 Total: -29.67 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.63 Total: -24.62 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.20 Total: -5.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.88 -8.89 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.246 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds