Wall clock time and date at job start Mon Mar 30 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47083 * 2 1 4 4 C 1.50700 * 109.47105 * 239.99856 * 2 1 3 5 5 H 1.08002 * 120.00035 * 240.00454 * 4 2 1 6 6 C 1.37878 * 119.99907 * 59.99766 * 4 2 1 7 7 N 1.31517 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99841 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47156 * 90.00448 * 8 6 4 10 10 H 1.48508 * 109.46978 * 210.00151 * 8 6 4 11 11 H 1.48501 * 109.47282 * 330.00148 * 8 6 4 12 12 C 1.50703 * 109.47160 * 120.00100 * 2 1 3 13 13 C 1.38265 * 119.94041 * 239.99862 * 12 2 1 14 14 C 1.38150 * 120.05296 * 179.97438 * 13 12 2 15 15 C 1.38731 * 119.94616 * 0.02562 * 14 13 12 16 16 O 1.35897 * 120.05696 * 179.97438 * 15 14 13 17 17 C 1.42904 * 116.99794 * 359.97438 * 16 15 14 18 18 C 1.53001 * 109.46852 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49877 * 243.74545 * 18 17 16 20 20 C 1.52993 * 117.49823 * 175.08644 * 18 17 16 21 21 C 1.38731 * 119.88653 * 359.97000 * 15 14 13 22 22 C 1.38147 * 119.94605 * 0.02759 * 21 15 14 23 23 H 1.09001 * 109.46731 * 300.00002 * 1 2 3 24 24 H 1.08997 * 109.47037 * 59.99712 * 1 2 3 25 25 H 1.08995 * 109.46879 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99908 * 179.97438 * 7 6 4 27 27 H 1.08002 * 119.97507 * 359.72598 * 13 12 2 28 28 H 1.08002 * 120.02581 * 179.97438 * 14 13 12 29 29 H 1.09004 * 109.46738 * 299.99812 * 17 16 15 30 30 H 1.08997 * 109.47288 * 60.00087 * 17 16 15 31 31 H 1.09003 * 115.54769 * 29.41955 * 18 17 16 32 32 H 1.08992 * 117.50045 * 0.02562 * 19 18 17 33 33 H 1.09001 * 117.49498 * 145.01953 * 19 18 17 34 34 H 1.09007 * 117.50150 * 214.97924 * 20 18 17 35 35 H 1.08998 * 117.50106 * 359.97438 * 20 18 17 36 36 H 1.07999 * 120.02746 * 180.02562 * 21 15 14 37 37 H 1.07998 * 119.97416 * 179.97438 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1415 -5.1123 11 1 3.6292 -1.7585 -3.7122 12 6 2.0324 -0.7104 1.2305 13 6 2.8272 -0.0373 2.1398 14 6 3.2886 -0.6862 3.2688 15 6 2.9541 -2.0144 3.4895 16 8 3.4072 -2.6550 4.5991 17 6 4.2241 -1.8998 5.4961 18 6 4.6357 -2.7821 6.6764 19 6 4.1392 -2.3792 8.0664 20 6 5.6119 -2.1896 7.6946 21 6 2.1564 -2.6874 2.5757 22 6 1.6975 -2.0341 1.4482 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7094 1.1617 -3.4844 27 1 3.0910 0.9954 1.9653 28 1 3.9098 -0.1601 3.9786 29 1 5.1158 -1.5550 4.9724 30 1 3.6628 -1.0404 5.8627 31 1 4.7185 -3.8473 6.4606 32 1 3.5191 -1.4860 8.1399 33 1 3.8957 -3.1795 8.7652 34 1 6.3367 -2.8651 8.1491 35 1 5.9613 -1.1714 7.5234 36 1 1.8943 -3.7213 2.7454 37 1 1.0768 -2.5578 0.7363 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260281541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:49 Heat of formation + Delta-G solvation = -16.066744 kcal Electronic energy + Delta-G solvation = -16973.555574 eV Core-core repulsion = 14294.886248 eV Total energy + Delta-G solvation = -2678.669326 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07141 -39.13291 -37.70029 -35.79967 -33.00790 -31.92120 -29.62404 -28.15442 -27.18105 -23.96454 -23.63289 -23.25904 -21.63496 -21.14875 -19.10596 -18.29962 -17.20785 -16.89138 -16.70741 -16.08364 -15.61592 -15.34979 -14.97189 -14.64821 -14.21158 -13.91098 -13.70696 -13.52523 -13.23960 -12.86494 -12.80284 -12.40575 -12.39474 -12.24783 -12.10665 -11.94109 -11.58783 -11.38106 -11.25131 -10.98710 -10.82284 -10.45619 -9.81885 -8.83937 -8.07798 -6.22127 0.51720 0.65986 1.42107 1.43098 1.53321 2.18551 2.43963 2.88534 2.98754 3.19498 3.76542 3.91321 3.99303 4.01335 4.10031 4.24594 4.37497 4.39150 4.57507 4.62981 4.66900 4.78026 4.86118 4.89020 5.00561 5.06434 5.18291 5.22535 5.23973 5.29389 5.42817 5.53769 5.59449 5.71424 5.94835 6.10075 6.12779 6.39256 6.57571 6.86734 7.45726 8.96057 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.046547 B = 0.004098 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.393181 B = 6831.711344 C = 6989.705725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.074 3.926 3 H 0.005 0.995 4 C -0.521 4.521 5 H 0.050 0.950 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.271 1.271 12 C -0.093 4.093 13 C -0.102 4.102 14 C -0.201 4.201 15 C 0.102 3.898 16 O -0.327 6.327 17 C 0.085 3.915 18 C -0.173 4.173 19 C -0.176 4.176 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.083 4.083 23 H 0.024 0.976 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.262 0.738 27 H 0.123 0.877 28 H 0.147 0.853 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -5.160 18.093 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.056 3.944 3 H 0.023 0.977 4 C -0.559 4.559 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.196 1.196 12 C -0.093 4.093 13 C -0.120 4.120 14 C -0.220 4.220 15 C 0.057 3.943 16 O -0.241 6.241 17 C 0.011 3.989 18 C -0.192 4.192 19 C -0.213 4.213 20 C -0.194 4.194 21 C -0.175 4.175 22 C -0.101 4.101 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.157 0.843 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.574 -5.239 18.031 19.894 hybrid contribution 0.147 0.033 -1.224 1.234 sum 6.721 -5.206 16.806 18.834 Atomic orbital electron populations 1.21640 0.97512 0.99239 0.99623 1.17694 0.93061 0.93902 0.89758 0.97702 1.21424 1.31004 1.12269 0.91237 0.93126 1.25713 0.95302 0.95702 1.01743 1.70013 1.37692 1.24023 1.23983 0.85624 0.78858 0.78413 0.79194 1.19960 1.20836 1.19592 1.20390 0.97558 0.94963 0.96376 1.21035 0.97239 1.00051 0.93701 1.21304 1.05918 0.94267 1.00472 1.18909 0.96172 0.91503 0.87672 1.85983 1.65767 1.40908 1.31474 1.22460 0.93621 0.93882 0.88963 1.22088 1.07092 1.00373 0.89614 1.23203 0.97535 1.03862 0.96700 1.23110 0.92946 1.02990 1.00364 1.20532 1.01468 1.01043 0.94447 1.20858 0.99019 0.94134 0.96063 0.95734 0.92216 0.94920 0.92929 0.85921 0.83563 0.91288 0.91350 0.87263 0.88333 0.87601 0.86933 0.87696 0.84325 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.78 71.98 0.63 -5.43 16 2 C 0.07 3.82 2.48 -12.28 -0.03 3.79 16 3 H 0.00 0.27 7.87 -2.39 -0.02 0.25 16 4 C -0.52 -29.01 8.24 25.60 0.21 -28.80 16 5 H 0.05 2.82 7.60 -2.91 -0.02 2.79 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 8 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 C -0.09 -4.09 4.74 -19.85 -0.09 -4.19 16 13 C -0.10 -3.94 9.66 22.26 0.22 -3.73 16 14 C -0.20 -6.55 9.04 22.37 0.20 -6.35 16 15 C 0.10 3.40 6.69 22.51 0.15 3.56 16 16 O -0.33 -9.60 10.14 -92.39 -0.94 -10.53 16 17 C 0.09 1.85 5.02 71.98 0.36 2.21 16 18 C -0.17 -3.05 6.05 -10.80 -0.07 -3.12 16 19 C -0.18 -2.46 10.18 30.62 0.31 -2.15 16 20 C -0.16 -1.96 10.25 30.61 0.31 -1.65 16 21 C -0.16 -5.53 9.99 22.37 0.22 -5.31 16 22 C -0.08 -3.36 8.70 22.25 0.19 -3.17 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 25 H 0.03 1.53 7.38 -2.39 -0.02 1.51 16 26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.12 4.48 7.94 -2.91 -0.02 4.46 16 28 H 0.15 3.75 6.30 -2.91 -0.02 3.73 16 29 H 0.07 1.41 7.66 -2.39 -0.02 1.39 16 30 H 0.07 1.36 7.40 -2.39 -0.02 1.34 16 31 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.10 1.34 8.03 -2.39 -0.02 1.32 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.12 4.98 7.57 -2.91 -0.02 4.96 16 Total: -1.00 -61.78 308.35 5.44 -56.33 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.04 Total: 14.20 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 3.07 Total: -53.10 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.24 Total: -52.84 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.94 Total: -10.53 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -61.78 5.44 -56.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.266 kcal (2) G-P(sol) polarization free energy of solvation -61.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds