Wall clock time and date at job start Mon Mar 30 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47450 * 2 1 4 4 C 1.50700 * 109.47184 * 240.00226 * 2 1 3 5 5 C 1.37644 * 120.12563 * 294.52654 * 4 2 1 6 6 C 1.38609 * 120.24633 * 179.69936 * 5 4 2 7 7 C 1.38664 * 120.50128 * 0.60979 * 6 5 4 8 8 C 1.37594 * 120.24539 * 359.67046 * 7 6 5 9 9 C 1.40693 * 120.12986 * 114.80971 * 4 2 1 10 10 C 1.41404 * 120.24424 * 0.02562 * 9 4 2 11 11 H 1.08001 * 119.99408 * 328.47707 * 10 9 4 12 12 C 1.39943 * 119.99840 * 148.48321 * 10 9 4 13 13 N 1.30820 * 120.00076 * 348.55172 * 12 10 9 14 14 Si 1.86803 * 119.99589 * 168.55547 * 12 10 9 15 15 H 1.48497 * 109.47021 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46726 * 120.00033 * 14 12 10 17 17 H 1.48503 * 109.46776 * 239.99474 * 14 12 10 18 18 C 1.53000 * 109.47116 * 119.99880 * 2 1 3 19 19 H 1.08999 * 111.01943 * 55.78004 * 18 2 1 20 20 C 1.55309 * 111.12754 * 179.97438 * 18 2 1 21 21 C 1.54381 * 102.43660 * 152.15586 * 20 18 2 22 22 O 1.43237 * 107.58723 * 338.54181 * 21 20 18 23 23 C 1.43639 * 109.97501 * 358.28970 * 22 21 20 24 24 H 1.09002 * 109.46554 * 59.99807 * 1 2 3 25 25 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46934 * 300.00243 * 1 2 3 27 27 H 1.07996 * 119.87613 * 0.02562 * 5 4 2 28 28 H 1.07997 * 119.75050 * 180.30774 * 6 5 4 29 29 H 1.08005 * 119.87636 * 179.70461 * 7 6 5 30 30 H 1.08005 * 120.12143 * 180.02562 * 8 7 6 31 31 H 0.97003 * 120.00031 * 180.02562 * 13 12 10 32 32 H 1.09007 * 110.84422 * 33.86426 * 20 18 2 33 33 H 1.08993 * 110.84927 * 270.45105 * 20 18 2 34 34 H 1.08997 * 109.82943 * 98.05619 * 21 20 18 35 35 H 1.09004 * 109.82677 * 219.03235 * 21 20 18 36 36 H 1.08998 * 110.31364 * 143.33990 * 23 22 21 37 37 H 1.09000 * 110.31183 * 265.41208 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7967 -2.0564 -1.3957 6 6 2.2522 -2.7109 -2.5294 7 6 2.9601 -2.0225 -3.5029 8 6 3.2122 -0.6779 -3.3559 9 6 2.7491 -0.0016 -2.2119 10 6 3.0029 1.3800 -2.0499 11 1 2.2944 2.0007 -1.5215 12 6 4.1719 1.9430 -2.5742 13 7 5.1307 1.1689 -3.0133 14 14 4.3630 3.7998 -2.6471 15 1 3.1458 4.4448 -2.0927 16 1 5.5470 4.2071 -1.8487 17 1 4.5482 4.2233 -4.0584 18 6 2.0400 -0.7212 1.2493 19 1 1.6308 -1.7295 1.3130 20 6 3.5924 -0.7442 1.2878 21 6 3.8865 -0.8053 2.8021 22 8 2.7285 -0.3152 3.4880 23 6 1.7314 0.0925 2.5379 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.2503 -2.6034 -0.6417 28 1 2.0585 -3.7661 -2.6532 29 1 3.3144 -2.5436 -4.3801 30 1 3.7634 -0.1435 -4.1157 31 1 5.9412 1.5591 -3.3765 32 1 4.0048 0.1643 0.8488 33 1 3.9800 -1.6281 0.7814 34 1 4.0839 -1.8353 3.0992 35 1 4.7478 -0.1798 3.0370 36 1 0.7350 -0.1493 2.9078 37 1 1.8117 1.1614 2.3402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260292319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:29 Heat of formation + Delta-G solvation = -48.781089 kcal Electronic energy + Delta-G solvation = -18272.434718 eV Core-core repulsion = 15592.346791 eV Total energy + Delta-G solvation = -2680.087926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.30227 -37.67072 -34.35947 -33.56770 -30.48867 -29.66221 -28.90165 -27.55472 -25.24058 -23.31636 -21.57721 -21.26499 -20.37829 -18.70161 -17.21634 -16.25645 -15.48997 -15.42477 -14.65666 -14.41109 -13.73911 -13.41963 -13.08322 -12.81820 -12.61698 -12.43425 -12.29371 -11.90683 -11.46988 -11.27872 -11.12795 -11.02035 -10.74178 -10.67065 -10.43727 -10.31986 -10.11173 -10.09489 -9.30060 -9.23737 -9.19167 -9.11498 -7.34073 -7.28826 -6.70701 -4.37114 2.77357 2.97045 3.07965 3.12090 3.20551 3.94512 4.25497 4.66410 5.01706 5.25092 5.36186 5.55766 5.58001 5.70196 5.86475 5.92557 6.01998 6.09492 6.15151 6.26056 6.31207 6.38201 6.40887 6.48009 6.54925 6.70185 6.81149 6.88059 6.94707 7.17540 7.25281 7.31774 7.38615 7.63041 7.89700 8.03390 8.07418 8.30194 8.62714 8.90626 8.96786 10.25097 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.009693 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.722734 B = 2887.882157 C = 3733.281232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.024 4.024 3 H 0.085 0.915 4 C -0.174 4.174 5 C -0.092 4.092 6 C -0.234 4.234 7 C -0.112 4.112 8 C -0.154 4.154 9 C 0.119 3.881 10 C -0.466 4.466 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.804 5.804 14 Si 0.902 3.098 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.274 1.274 18 C -0.104 4.104 19 H 0.076 0.924 20 C -0.141 4.141 21 C 0.050 3.950 22 O -0.394 6.394 23 C 0.053 3.947 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.277 0.723 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -0.903 5.274 6.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.042 4.042 3 H 0.103 0.897 4 C -0.175 4.175 5 C -0.110 4.110 6 C -0.254 4.254 7 C -0.131 4.131 8 C -0.173 4.173 9 C 0.117 3.883 10 C -0.496 4.496 11 H 0.096 0.904 12 C -0.140 4.140 13 N -0.430 5.430 14 Si 0.727 3.273 15 H -0.185 1.185 16 H -0.201 1.201 17 H -0.199 1.199 18 C -0.123 4.123 19 H 0.094 0.906 20 C -0.179 4.179 21 C -0.027 4.027 22 O -0.314 6.314 23 C -0.023 4.023 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.951 -0.869 5.401 6.216 hybrid contribution 0.380 0.668 -0.430 0.881 sum -2.571 -0.200 4.971 5.600 Atomic orbital electron populations 1.21853 0.96317 1.00931 1.00592 1.19780 0.93701 0.99723 0.90997 0.89663 1.19526 1.08692 0.92962 0.96335 1.20323 0.99985 0.94237 0.96489 1.20379 1.09049 0.97853 0.98087 1.20691 0.99461 0.95239 0.97689 1.21279 1.04032 0.93380 0.98635 1.17438 0.88645 0.93001 0.89242 1.19501 1.04400 0.93695 1.32041 0.90374 1.25813 0.95280 0.99907 0.92966 1.69798 1.05030 1.36904 1.31296 0.86360 0.79148 0.83098 0.78719 1.18498 1.20104 1.19912 1.22948 0.95442 0.99331 0.94543 0.90585 1.23044 0.96090 1.04410 0.94317 1.23146 0.88460 0.98390 0.92663 1.88309 1.26813 1.83716 1.32538 1.23578 0.91546 0.98482 0.88685 0.92742 0.93384 0.93875 0.89676 0.89777 0.89668 0.86877 0.91173 0.89646 0.90253 0.92063 0.92046 0.90501 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.93 37.16 0.33 -1.96 16 2 C -0.02 -0.45 1.93 -91.77 -0.18 -0.62 16 3 H 0.09 1.73 5.80 -51.93 -0.30 1.43 16 4 C -0.17 -3.84 4.21 -103.91 -0.44 -4.27 16 5 C -0.09 -1.97 8.78 -39.66 -0.35 -2.31 16 6 C -0.23 -5.13 10.05 -39.29 -0.39 -5.53 16 7 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 8 C -0.15 -3.89 8.64 -38.88 -0.34 -4.23 16 9 C 0.12 2.97 5.51 -106.82 -0.59 2.38 16 10 C -0.47 -11.62 8.10 -37.74 -0.31 -11.92 16 11 H 0.08 1.89 6.58 -52.49 -0.35 1.54 16 12 C 0.08 1.86 5.22 -17.34 -0.09 1.77 16 13 N -0.80 -20.34 11.07 55.55 0.62 -19.72 16 14 Si 0.90 18.42 29.57 -169.99 -5.03 13.39 16 15 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 C -0.10 -1.77 2.27 -88.07 -0.20 -1.97 16 19 H 0.08 1.27 7.36 -51.93 -0.38 0.89 16 20 C -0.14 -2.50 5.84 -24.78 -0.14 -2.64 16 21 C 0.05 0.78 7.80 37.88 0.30 1.08 16 22 O -0.39 -6.69 11.36 -35.23 -0.40 -7.09 16 23 C 0.05 0.83 6.59 38.49 0.25 1.09 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.76 7.73 -51.93 -0.40 0.35 16 26 H 0.04 0.60 7.60 -51.93 -0.39 0.21 16 27 H 0.09 1.63 7.21 -52.49 -0.38 1.25 16 28 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.11 2.98 6.47 -52.48 -0.34 2.64 16 31 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 32 H 0.08 1.69 8.03 -51.93 -0.42 1.27 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 37 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -26.01 297.10 -8.34 -34.35 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.47 Total: 6.72 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: -2.54 Total: -32.13 kcal Atomic # 7 Polarization: -20.34 SS G_CDS: 0.62 Total: -19.72 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.40 Total: -7.09 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.01 -8.34 -34.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260292319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.429 kcal (2) G-P(sol) polarization free energy of solvation -26.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds